Wall clock time and date at job start Tue Mar 31 2020 01:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99760 * 2 1 4 4 H 1.48502 * 109.46712 * 272.93872 * 3 2 1 5 5 H 1.48497 * 109.47243 * 32.93609 * 3 2 1 6 6 H 1.48493 * 109.46850 * 152.94117 * 3 2 1 7 7 C 1.38806 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00440 * 339.35211 * 7 2 1 9 9 N 1.36941 * 119.99865 * 159.34748 * 7 2 1 10 10 C 1.46925 * 120.62940 * 152.61406 * 9 7 2 11 11 C 1.53191 * 108.77600 * 126.41391 * 10 9 7 12 12 C 1.53036 * 109.33888 * 54.61743 * 11 10 9 13 13 H 1.09000 * 109.43257 * 58.68912 * 12 11 10 14 14 N 1.46497 * 109.48382 * 178.64604 * 12 11 10 15 15 C 1.34779 * 120.00246 * 275.08504 * 14 12 11 16 16 O 1.21698 * 120.00000 * 359.97438 * 15 14 12 17 17 C 1.46658 * 120.00168 * 180.02562 * 15 14 12 18 18 C 1.36541 * 125.98621 * 179.71875 * 17 15 14 19 19 C 1.40368 * 106.71025 * 179.84623 * 18 17 15 20 20 C 1.35128 * 107.11006 * 0.40590 * 19 18 17 21 21 O 1.33935 * 108.77004 * 359.74524 * 20 19 18 22 22 C 1.53044 * 109.53873 * 298.68031 * 12 11 10 23 23 H 1.08996 * 109.49457 * 301.35405 * 22 12 11 24 24 O 1.42898 * 109.49722 * 181.28531 * 22 12 11 25 25 C 1.46929 * 120.63102 * 332.63069 * 9 7 2 26 26 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.58212 * 246.20215 * 10 9 7 28 28 H 1.09002 * 109.59132 * 6.61928 * 10 9 7 29 29 H 1.09002 * 109.49643 * 174.58400 * 11 10 9 30 30 H 1.09000 * 109.49682 * 294.64603 * 11 10 9 31 31 H 0.97003 * 120.00328 * 95.08653 * 14 12 11 32 32 H 1.08011 * 126.64683 * 359.95451 * 18 17 15 33 33 H 1.07996 * 126.44509 * 180.15140 * 19 18 17 34 34 H 1.07998 * 125.61568 * 179.77842 * 20 19 18 35 35 H 0.96693 * 113.99983 * 180.02562 * 24 22 12 36 36 H 1.08997 * 109.58346 * 113.79868 * 25 9 7 37 37 H 1.09006 * 109.69925 * 353.44769 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4355 2.0823 -1.3983 5 1 1.4801 2.6340 0.7612 6 1 3.5774 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3308 9 7 3.3137 -1.2403 -0.4177 10 6 4.2351 -2.2629 0.0962 11 6 4.8753 -2.9907 -1.0900 12 6 5.5289 -1.9662 -2.0202 13 1 6.2785 -1.4003 -1.4670 14 7 6.1701 -2.6613 -3.1391 15 6 7.4204 -3.1460 -3.0038 16 8 8.0169 -3.0059 -1.9524 17 6 8.0626 -3.8413 -4.1241 18 6 9.3200 -4.3734 -4.1234 19 6 9.5188 -4.9411 -5.3917 20 6 8.3915 -4.7254 -6.1049 21 8 7.5164 -4.0625 -5.3377 22 6 4.4623 -1.0096 -2.5583 23 1 3.6996 -1.5776 -3.0909 24 8 5.0686 -0.0720 -3.4500 25 6 3.8174 -0.2594 -1.3887 26 1 -0.4850 0.8400 -0.0004 27 1 5.0115 -1.7871 0.6953 28 1 3.6841 -2.9767 0.7087 29 1 5.6318 -3.6855 -0.7253 30 1 4.1089 -3.5409 -1.6359 31 1 5.6949 -2.7726 -3.9774 32 1 10.0247 -4.3615 -3.3049 33 1 10.4072 -5.4506 -5.7345 34 1 8.2236 -5.0367 -7.1253 35 1 4.4498 0.5668 -3.8294 36 1 4.5598 0.3798 -0.9107 37 1 2.9923 0.3508 -1.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090020942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:29 Heat of formation + Delta-G solvation = -66.538587 kcal Electronic energy + Delta-G solvation = -22174.991027 eV Core-core repulsion = 18725.916871 eV Total energy + Delta-G solvation = -3449.074155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.63306 -41.09930 -39.54446 -37.06906 -36.01693 -34.22628 -33.95673 -32.19478 -31.00730 -30.36493 -27.08785 -24.96985 -24.16357 -23.14919 -22.65545 -21.48944 -21.22966 -19.67159 -18.81554 -18.33688 -17.77411 -17.33762 -17.26946 -16.70008 -16.13991 -15.80706 -15.58247 -15.19488 -15.03099 -14.65497 -14.42474 -14.08043 -14.01079 -13.91146 -13.71927 -13.54080 -13.10442 -12.73444 -12.53660 -12.38576 -12.04785 -11.76298 -11.58162 -11.33702 -11.14037 -11.04134 -10.71025 -10.29714 -9.64287 -9.03963 -8.19648 -5.53809 0.03157 1.25538 1.41807 1.44019 1.49679 1.65186 2.08822 2.15918 2.37390 2.85949 3.11087 3.30169 3.68119 3.76380 3.94884 3.97012 4.02799 4.12096 4.21184 4.31495 4.50493 4.62791 4.65487 4.72801 4.84984 4.87910 4.92110 4.96263 4.98903 5.24628 5.29930 5.41509 5.80874 5.84696 6.09914 6.40292 6.69082 6.85733 6.96973 7.54661 7.94423 8.99623 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036346 B = 0.004142 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.188542 B = 6758.659487 C = 6941.464978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.028 4.028 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.310 1.310 6 H -0.269 1.269 7 C -0.252 4.252 8 H 0.060 0.940 9 N -0.614 5.614 10 C 0.145 3.855 11 C -0.128 4.128 12 C 0.166 3.834 13 H 0.073 0.927 14 N -0.695 5.695 15 C 0.599 3.401 16 O -0.562 6.562 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.233 4.233 20 C 0.010 3.990 21 O -0.173 6.173 22 C 0.097 3.903 23 H 0.071 0.929 24 O -0.570 6.570 25 C 0.098 3.902 26 H 0.263 0.737 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.414 0.586 32 H 0.158 0.842 33 H 0.186 0.814 34 H 0.256 0.744 35 H 0.395 0.605 36 H 0.034 0.966 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.979 -8.455 -14.988 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.168 4.168 12 C 0.061 3.939 13 H 0.091 0.909 14 N -0.344 5.344 15 C 0.387 3.613 16 O -0.443 6.443 17 C -0.160 4.160 18 C -0.146 4.146 19 C -0.252 4.252 20 C -0.059 4.059 21 O -0.068 6.068 22 C 0.035 3.965 23 H 0.089 0.911 24 O -0.377 6.377 25 C -0.028 4.028 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.176 0.824 33 H 0.203 0.797 34 H 0.272 0.728 35 H 0.245 0.755 36 H 0.051 0.949 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.472 -8.487 -14.150 24.032 hybrid contribution -0.668 1.200 -0.007 1.373 sum 16.804 -7.287 -14.157 23.150 Atomic orbital electron populations 1.69948 1.07262 1.27348 1.55097 1.25854 0.95775 1.00641 1.00085 0.86030 0.78466 0.80595 0.78047 1.19221 1.23894 1.19432 1.18885 0.86249 0.93924 1.39102 0.92215 1.44418 1.08065 1.34406 1.47034 1.21095 0.91997 0.90785 0.94188 1.22260 0.99884 0.97653 0.97014 1.20808 0.93733 0.92059 0.87258 0.90878 1.45779 1.14964 1.56406 1.17218 1.16848 0.81222 0.77904 0.85318 1.90847 1.65008 1.60159 1.28292 1.21774 0.96325 1.11536 0.86377 1.22266 0.94833 0.97481 1.00038 1.22227 1.02197 1.07403 0.93372 1.25423 0.87678 0.94463 0.98368 1.84070 1.42474 1.59240 1.21026 1.22410 0.93503 0.90104 0.90438 0.91115 1.86431 1.40493 1.47793 1.63031 1.22046 0.97339 0.92682 0.90711 0.92753 0.94852 0.91087 0.90313 0.90963 0.75013 0.82391 0.79707 0.72814 0.75521 0.94852 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.01 13.97 21.65 0.30 -57.71 16 2 C -0.03 -1.59 5.23 84.86 0.44 -1.15 16 3 Si 0.94 45.19 24.35 68.60 1.67 46.86 16 4 H -0.27 -11.65 6.62 99.48 0.66 -10.99 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.27 -12.83 6.63 99.48 0.66 -12.17 16 7 C -0.25 -13.86 10.04 84.03 0.84 -13.02 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 N -0.61 -28.11 2.77 -699.09 -1.94 -30.04 16 10 C 0.14 5.60 6.52 86.36 0.56 6.16 16 11 C -0.13 -4.22 5.65 30.67 0.17 -4.05 16 12 C 0.17 5.47 2.12 45.02 0.10 5.56 16 13 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 14 N -0.69 -19.92 4.91 -446.39 -2.19 -22.12 16 15 C 0.60 18.43 7.75 86.44 0.67 19.10 16 16 O -0.56 -20.88 16.53 -4.34 -0.07 -20.95 16 17 C -0.11 -2.71 7.13 24.07 0.17 -2.54 16 18 C -0.13 -2.66 10.62 22.39 0.24 -2.42 16 19 C -0.23 -3.20 10.88 22.07 0.24 -2.96 16 20 C 0.01 0.12 12.08 67.10 0.81 0.93 16 21 O -0.17 -3.45 10.40 -5.03 -0.05 -3.50 16 22 C 0.10 3.21 3.14 30.67 0.10 3.31 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 O -0.57 -16.74 13.16 -148.98 -1.96 -18.70 16 25 C 0.10 4.03 3.83 86.36 0.33 4.36 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.41 10.16 8.36 -92.71 -0.77 9.39 16 32 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.26 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.39 8.64 9.08 -74.06 -0.67 7.97 16 36 H 0.03 1.40 7.08 -2.39 -0.02 1.39 16 37 H 0.07 2.90 4.50 -2.38 -0.01 2.89 16 Total: -1.00 -72.32 309.05 0.00 -72.31 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.43 Total: 20.56 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 4.68 Total: 13.28 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -3.83 Total: -109.87 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.08 Total: -43.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.86 kcal Total: -72.32 0.00 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090020942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.774 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds