Wall clock time and date at job start Tue Mar 31 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99585 * 2 1 4 4 H 1.48501 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47274 * 299.99657 * 3 2 1 6 6 H 1.48496 * 109.47053 * 60.00008 * 3 2 1 7 7 C 1.38804 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00323 * 197.37503 * 7 2 1 9 9 N 1.36944 * 120.00262 * 17.37593 * 7 2 1 10 10 C 1.46926 * 120.63214 * 207.66428 * 9 7 2 11 11 C 1.53186 * 108.77301 * 233.62736 * 10 9 7 12 12 C 1.53039 * 109.31377 * 305.36504 * 11 10 9 13 13 H 1.09002 * 109.44983 * 301.35071 * 12 11 10 14 14 N 1.46507 * 109.46085 * 181.38867 * 12 11 10 15 15 C 1.34772 * 120.00162 * 84.92953 * 14 12 11 16 16 O 1.21614 * 120.00131 * 0.02562 * 15 14 12 17 17 C 1.47378 * 120.00130 * 179.97438 * 15 14 12 18 18 C 1.47019 * 127.19348 * 180.02562 * 17 15 14 19 19 C 1.34180 * 105.95286 * 179.97438 * 18 17 15 20 20 O 1.34210 * 109.12502 * 0.02562 * 19 18 17 21 21 C 1.33651 * 110.90932 * 0.02562 * 20 19 18 22 22 C 1.53033 * 109.53943 * 61.36491 * 12 11 10 23 23 H 1.09000 * 109.50047 * 58.61998 * 22 12 11 24 24 O 1.42902 * 109.49877 * 178.68351 * 22 12 11 25 25 C 1.46924 * 120.62808 * 27.67884 * 9 7 2 26 26 H 0.97003 * 120.00526 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58362 * 353.41483 * 10 9 7 28 28 H 1.09001 * 109.58545 * 113.83874 * 10 9 7 29 29 H 1.09002 * 109.50074 * 185.41064 * 11 10 9 30 30 H 1.09002 * 109.49942 * 65.31594 * 11 10 9 31 31 H 0.97003 * 119.99554 * 264.92737 * 14 12 11 32 32 H 1.08003 * 127.02241 * 359.95339 * 18 17 15 33 33 H 1.08002 * 125.43455 * 180.02562 * 19 18 17 34 34 H 1.07997 * 125.80294 * 179.97438 * 21 20 19 35 35 H 0.96702 * 114.00268 * 179.97438 * 24 22 12 36 36 H 1.09000 * 109.58708 * 6.59074 * 25 9 7 37 37 H 1.09003 * 109.70644 * 246.23348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3725 -2.3612 -0.3531 10 6 1.8197 -3.6547 0.1812 11 6 2.0755 -4.6096 -0.9889 12 6 0.8202 -4.6897 -1.8606 13 1 -0.0189 -5.0366 -1.2576 14 7 1.0501 -5.6277 -2.9623 15 6 0.8501 -6.9475 -2.7765 16 8 0.4785 -7.3598 -1.6945 17 6 1.0808 -7.8910 -3.8850 18 6 0.9130 -9.3514 -3.8585 19 6 1.2356 -9.7820 -5.0877 20 8 1.5796 -8.7295 -5.8461 21 6 1.4956 -7.5919 -5.1496 22 6 0.5020 -3.3046 -2.4282 23 1 1.3504 -2.9467 -3.0114 24 8 -0.6524 -3.3864 -3.2666 25 6 0.2283 -2.3349 -1.2744 26 1 -0.4851 0.8400 -0.0004 27 1 2.7401 -3.5171 0.7486 28 1 1.0472 -4.0692 0.8290 29 1 2.3150 -5.6009 -0.6040 30 1 2.9094 -4.2392 -1.5852 31 1 1.3461 -5.2988 -3.8255 32 1 0.5953 -9.9544 -3.0207 33 1 1.2208 -10.8112 -5.4146 34 1 1.7176 -6.6037 -5.5245 35 1 -0.9126 -2.5428 -3.6611 36 1 0.0987 -1.3265 -1.6675 37 1 -0.6754 -2.6403 -0.7469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090071036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:07 Heat of formation + Delta-G solvation = -46.780339 kcal Electronic energy + Delta-G solvation = -22015.325757 eV Core-core repulsion = 18567.108384 eV Total energy + Delta-G solvation = -3448.217373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.66534 -39.57198 -37.78256 -35.28858 -34.34573 -33.03885 -32.11852 -30.26562 -29.19759 -28.77954 -25.38611 -23.63122 -22.31999 -21.73258 -21.49917 -20.00796 -19.52437 -18.38195 -16.97467 -16.60745 -16.28215 -16.12052 -15.82114 -14.98086 -14.78321 -14.45246 -13.90862 -13.73636 -13.47180 -13.24095 -13.05258 -12.73863 -12.46396 -12.21179 -11.99964 -11.68803 -11.23913 -10.86617 -10.78857 -10.42910 -10.20812 -10.04241 -9.95032 -9.92426 -9.56774 -9.37657 -9.00646 -8.74452 -8.54701 -6.80115 -5.88731 -3.32165 1.26152 1.95549 2.75117 3.30055 3.34736 3.39723 3.41760 3.49561 4.39303 4.43617 4.55433 4.61738 4.98096 5.27113 5.34412 5.39871 5.47576 5.51339 5.58743 5.75213 5.89732 5.99377 6.07004 6.13197 6.21013 6.43530 6.46683 6.69614 6.77313 6.83116 6.90094 7.10169 7.44039 7.70209 7.73791 8.07538 8.34111 8.42759 9.09581 9.72452 10.28588 11.19697 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.003778 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.165825 B = 7410.152579 C = 7573.884928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.089 0.911 14 N -0.711 5.711 15 C 0.582 3.418 16 O -0.540 6.540 17 C -0.227 4.227 18 C -0.165 4.165 19 C -0.045 4.045 20 O -0.177 6.177 21 C 0.016 3.984 22 C 0.072 3.928 23 H 0.052 0.948 24 O -0.573 6.573 25 C 0.148 3.852 26 H 0.255 0.745 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.394 0.606 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.211 0.789 35 H 0.376 0.624 36 H 0.094 0.906 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -13.542 -12.081 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.360 5.360 15 C 0.369 3.631 16 O -0.418 6.418 17 C -0.232 4.232 18 C -0.185 4.185 19 C -0.111 4.111 20 O -0.072 6.072 21 C -0.054 4.054 22 C 0.011 3.989 23 H 0.070 0.930 24 O -0.378 6.378 25 C 0.021 3.979 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.176 0.824 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.223 0.777 36 H 0.112 0.888 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.696 -14.337 -11.389 18.507 hybrid contribution 0.414 1.648 -0.369 1.739 sum 3.110 -12.689 -11.758 17.576 Atomic orbital electron populations 1.70039 1.05268 1.25595 1.53662 1.25077 0.95316 0.98560 1.00696 0.86209 0.79400 0.83750 0.77343 1.20175 1.21524 1.21625 1.19256 0.92899 0.84618 1.41709 0.91281 1.44024 1.35643 1.01809 1.49852 1.20946 0.98278 0.86286 0.92709 1.22422 0.96605 1.00305 0.98640 1.21016 0.98766 0.86941 0.87347 0.89293 1.45956 1.68562 1.05972 1.15519 1.17264 0.77347 0.81735 0.86723 1.90780 1.46761 1.78025 1.26203 1.21685 1.11300 0.95049 0.95157 1.22816 1.04494 0.92735 0.98458 1.23919 1.04902 0.91777 0.90522 1.83777 1.67717 1.14750 1.40967 1.24457 1.00524 0.89880 0.90530 1.22981 0.87053 0.95399 0.93438 0.93027 1.86420 1.48357 1.36603 1.66381 1.21414 0.89846 0.98237 0.88411 0.93527 0.92055 0.95769 0.91742 0.91991 0.77292 0.82354 0.77583 0.77281 0.77725 0.88778 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 11.19 55.49 0.62 -24.71 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.33 2.99 -172.32 -0.52 -14.84 16 10 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 11 C -0.14 -2.52 5.65 -26.62 -0.15 -2.67 16 12 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 N -0.71 -10.77 4.91 -54.86 -0.27 -11.04 16 15 C 0.58 9.54 7.78 -12.54 -0.10 9.44 16 16 O -0.54 -10.94 16.65 5.26 0.09 -10.85 16 17 C -0.23 -2.96 6.31 -103.28 -0.65 -3.61 16 18 C -0.17 -1.89 11.01 -37.45 -0.41 -2.30 16 19 C -0.05 -0.39 12.03 29.30 0.35 -0.04 16 20 O -0.18 -1.71 10.52 7.67 0.08 -1.63 16 21 C 0.02 0.16 11.61 30.08 0.35 0.51 16 22 C 0.07 1.33 3.14 -26.61 -0.08 1.24 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 O -0.57 -9.62 13.16 -35.23 -0.46 -10.08 16 25 C 0.15 3.39 4.94 -3.71 -0.02 3.37 16 26 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.39 4.78 7.57 -40.82 -0.31 4.47 16 32 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.21 1.31 7.47 -52.49 -0.39 0.92 16 35 H 0.38 5.01 9.08 45.56 0.41 5.42 16 36 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -33.27 314.63 -5.77 -39.04 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.91 Total: 8.64 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.11 Total: 4.83 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.16 Total: -50.59 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.30 Total: -22.57 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.27 -5.77 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090071036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.737 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds