Wall clock time and date at job start Tue Mar 31 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99585 * 2 1 4 4 H 1.48501 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47274 * 299.99657 * 3 2 1 6 6 H 1.48496 * 109.47053 * 60.00008 * 3 2 1 7 7 C 1.38804 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00323 * 197.37503 * 7 2 1 9 9 N 1.36944 * 120.00262 * 17.37593 * 7 2 1 10 10 C 1.46926 * 120.63214 * 207.66428 * 9 7 2 11 11 C 1.53186 * 108.77301 * 233.62736 * 10 9 7 12 12 C 1.53039 * 109.31377 * 305.36504 * 11 10 9 13 13 H 1.09002 * 109.44983 * 301.35071 * 12 11 10 14 14 N 1.46507 * 109.46085 * 181.38867 * 12 11 10 15 15 C 1.34772 * 120.00162 * 84.92953 * 14 12 11 16 16 O 1.21614 * 120.00131 * 0.02562 * 15 14 12 17 17 C 1.47378 * 120.00130 * 179.97438 * 15 14 12 18 18 C 1.47019 * 127.19348 * 180.02562 * 17 15 14 19 19 C 1.34180 * 105.95286 * 179.97438 * 18 17 15 20 20 O 1.34210 * 109.12502 * 0.02562 * 19 18 17 21 21 C 1.33651 * 110.90932 * 0.02562 * 20 19 18 22 22 C 1.53033 * 109.53943 * 61.36491 * 12 11 10 23 23 H 1.09000 * 109.50047 * 58.61998 * 22 12 11 24 24 O 1.42902 * 109.49877 * 178.68351 * 22 12 11 25 25 C 1.46924 * 120.62808 * 27.67884 * 9 7 2 26 26 H 0.97003 * 120.00526 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58362 * 353.41483 * 10 9 7 28 28 H 1.09001 * 109.58545 * 113.83874 * 10 9 7 29 29 H 1.09002 * 109.50074 * 185.41064 * 11 10 9 30 30 H 1.09002 * 109.49942 * 65.31594 * 11 10 9 31 31 H 0.97003 * 119.99554 * 264.92737 * 14 12 11 32 32 H 1.08003 * 127.02241 * 359.95339 * 18 17 15 33 33 H 1.08002 * 125.43455 * 180.02562 * 19 18 17 34 34 H 1.07997 * 125.80294 * 179.97438 * 21 20 19 35 35 H 0.96702 * 114.00268 * 179.97438 * 24 22 12 36 36 H 1.09000 * 109.58708 * 6.59074 * 25 9 7 37 37 H 1.09003 * 109.70644 * 246.23348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3725 -2.3612 -0.3531 10 6 1.8197 -3.6547 0.1812 11 6 2.0755 -4.6096 -0.9889 12 6 0.8202 -4.6897 -1.8606 13 1 -0.0189 -5.0366 -1.2576 14 7 1.0501 -5.6277 -2.9623 15 6 0.8501 -6.9475 -2.7765 16 8 0.4785 -7.3598 -1.6945 17 6 1.0808 -7.8910 -3.8850 18 6 0.9130 -9.3514 -3.8585 19 6 1.2356 -9.7820 -5.0877 20 8 1.5796 -8.7295 -5.8461 21 6 1.4956 -7.5919 -5.1496 22 6 0.5020 -3.3046 -2.4282 23 1 1.3504 -2.9467 -3.0114 24 8 -0.6524 -3.3864 -3.2666 25 6 0.2283 -2.3349 -1.2744 26 1 -0.4851 0.8400 -0.0004 27 1 2.7401 -3.5171 0.7486 28 1 1.0472 -4.0692 0.8290 29 1 2.3150 -5.6009 -0.6040 30 1 2.9094 -4.2392 -1.5852 31 1 1.3461 -5.2988 -3.8255 32 1 0.5953 -9.9544 -3.0207 33 1 1.2208 -10.8112 -5.4146 34 1 1.7176 -6.6037 -5.5245 35 1 -0.9126 -2.5428 -3.6611 36 1 0.0987 -1.3265 -1.6675 37 1 -0.6754 -2.6403 -0.7469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090071036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:06 Heat of formation + Delta-G solvation = -73.120090 kcal Electronic energy + Delta-G solvation = -22016.467934 eV Core-core repulsion = 18567.108384 eV Total energy + Delta-G solvation = -3449.359551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44938 -40.95941 -39.30756 -36.90183 -35.84914 -34.22219 -33.59681 -31.55732 -30.67687 -30.22322 -27.14244 -24.98410 -23.89189 -23.22231 -22.35639 -21.35374 -20.88787 -19.46728 -18.72065 -18.11811 -17.39440 -17.12829 -17.06859 -16.63074 -15.87557 -15.79384 -15.59856 -15.34611 -15.02588 -14.60185 -14.35879 -13.87260 -13.82746 -13.56164 -13.38242 -13.31166 -13.04989 -12.68822 -12.53334 -12.11147 -11.99743 -11.88669 -11.46035 -11.12066 -10.92522 -10.84094 -10.61678 -10.11939 -9.71098 -8.77766 -7.91173 -5.38498 0.38082 1.15297 1.47937 1.50812 1.61275 1.99302 2.17346 2.34286 2.49657 3.10123 3.26427 3.61587 3.65197 3.80059 3.89643 4.03726 4.16044 4.29663 4.40232 4.44383 4.55506 4.69113 4.78075 4.87808 4.92729 5.02676 5.03913 5.14648 5.31173 5.34253 5.43222 5.55803 5.63933 6.00577 6.32648 6.55149 6.82553 7.09456 7.21311 7.76594 8.29809 9.15737 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.003778 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.165825 B = 7410.152579 C = 7573.884928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.170 3.830 13 H 0.053 0.947 14 N -0.698 5.698 15 C 0.581 3.419 16 O -0.591 6.591 17 C -0.269 4.269 18 C -0.201 4.201 19 C -0.020 4.020 20 O -0.175 6.175 21 C 0.046 3.954 22 C 0.094 3.906 23 H 0.071 0.929 24 O -0.574 6.574 25 C 0.156 3.844 26 H 0.252 0.748 27 H 0.068 0.932 28 H 0.007 0.993 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.247 0.753 35 H 0.393 0.607 36 H 0.073 0.927 37 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -14.108 -14.821 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.224 1.224 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.065 3.935 13 H 0.071 0.929 14 N -0.348 5.348 15 C 0.371 3.629 16 O -0.472 6.472 17 C -0.273 4.273 18 C -0.221 4.221 19 C -0.085 4.085 20 O -0.069 6.069 21 C -0.024 4.024 22 C 0.033 3.967 23 H 0.089 0.911 24 O -0.381 6.381 25 C 0.029 3.971 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.249 0.751 32 H 0.170 0.830 33 H 0.266 0.734 34 H 0.263 0.737 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 4.444 -14.913 -14.184 21.055 hybrid contribution -0.168 1.756 0.484 1.829 sum 4.276 -13.157 -13.700 19.470 Atomic orbital electron populations 1.70197 1.06752 1.26051 1.55067 1.25841 0.96022 1.01638 1.00846 0.85164 0.78689 0.79521 0.76775 1.18897 1.21250 1.22351 1.19598 0.93255 0.85534 1.41177 0.90876 1.44270 1.35676 1.02355 1.50585 1.21038 0.97863 0.85699 0.93874 1.22205 0.97001 0.99521 0.97552 1.20678 0.97538 0.87336 0.87964 0.92896 1.45673 1.68279 1.05325 1.15484 1.17762 0.76081 0.82127 0.86974 1.90749 1.49186 1.78818 1.28493 1.21525 1.14978 0.95257 0.95575 1.22962 1.06820 0.92386 0.99908 1.24610 1.01879 0.92958 0.89071 1.83839 1.67211 1.14973 1.40881 1.25022 0.97283 0.91142 0.88997 1.22542 0.88103 0.94133 0.91937 0.91073 1.86400 1.47850 1.38011 1.65806 1.21231 0.88288 0.98204 0.89375 0.93908 0.91355 0.97494 0.91383 0.90318 0.75121 0.83041 0.73398 0.73736 0.75762 0.90887 0.98862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.72 11.19 21.65 0.24 -53.48 16 2 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 3 Si 0.97 43.04 29.59 68.60 2.03 45.07 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.27 -14.12 9.58 84.03 0.81 -13.31 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -29.78 2.99 -699.11 -2.09 -31.88 16 10 C 0.14 6.04 6.52 86.36 0.56 6.60 16 11 C -0.12 -4.37 5.65 30.67 0.17 -4.20 16 12 C 0.17 6.13 2.12 45.01 0.10 6.23 16 13 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 14 N -0.70 -20.20 4.91 -445.72 -2.19 -22.39 16 15 C 0.58 18.87 7.78 86.65 0.67 19.54 16 16 O -0.59 -24.77 16.65 -4.08 -0.07 -24.84 16 17 C -0.27 -6.61 6.31 -18.99 -0.12 -6.73 16 18 C -0.20 -4.35 11.01 23.65 0.26 -4.09 16 19 C -0.02 -0.28 12.03 66.89 0.80 0.53 16 20 O -0.17 -2.69 10.52 4.52 0.05 -2.64 16 21 C 0.05 0.74 11.61 67.39 0.78 1.53 16 22 C 0.09 3.38 3.14 30.67 0.10 3.47 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 O -0.57 -18.58 13.16 -148.98 -1.96 -20.54 16 25 C 0.16 7.32 4.94 86.36 0.43 7.74 16 26 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.41 8.78 7.57 -92.71 -0.70 8.08 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.25 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.25 1.87 7.47 -2.91 -0.02 1.85 16 35 H 0.39 9.89 9.08 -74.06 -0.67 9.22 16 36 H 0.07 3.72 6.04 -2.39 -0.01 3.71 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: -1.00 -74.73 314.63 0.72 -74.01 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.27 Total: 21.54 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 4.98 Total: 15.15 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -4.04 Total: -107.74 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -1.98 Total: -48.03 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.73 0.72 -74.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090071036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.891 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds