Wall clock time and date at job start Tue Mar 31 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46907 * 2 1 4 4 C 1.50695 * 109.46920 * 119.99723 * 2 1 3 5 5 O 1.34259 * 126.52761 * 300.19129 * 4 2 1 6 6 C 1.34050 * 108.22655 * 180.26408 * 5 4 2 7 7 N 1.29940 * 109.24333 * 359.73318 * 6 5 4 8 8 C 1.36063 * 108.47764 * 359.97438 * 7 6 5 9 9 C 1.47423 * 126.44922 * 180.02562 * 8 7 6 10 10 O 1.21609 * 119.99681 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99889 * 0.02727 * 9 8 7 12 12 C 1.47586 * 134.48934 * 179.97438 * 11 9 8 13 13 C 1.53949 * 86.11504 * 155.36070 * 12 11 9 14 14 O 1.42903 * 113.74102 * 269.15490 * 13 12 11 15 15 C 1.50694 * 113.74088 * 137.95266 * 13 12 11 16 16 H 1.08000 * 120.00563 * 1.92388 * 15 13 12 17 17 C 1.37885 * 119.99902 * 181.92552 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47807 * 134.45633 * 359.87004 * 11 9 8 24 24 H 1.09003 * 109.47287 * 300.00022 * 1 2 3 25 25 H 1.09007 * 109.47134 * 59.99817 * 1 2 3 26 26 H 1.08995 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46975 * 239.99751 * 2 1 3 28 28 H 1.09005 * 109.46824 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47205 * 299.99216 * 3 2 1 30 30 H 1.08996 * 109.47507 * 60.00076 * 3 2 1 31 31 H 1.08001 * 125.37907 * 179.69362 * 6 5 4 32 32 H 1.08993 * 113.76952 * 41.05857 * 12 11 9 33 33 H 1.08995 * 113.86700 * 269.67206 * 12 11 9 34 34 H 0.96700 * 113.99800 * 178.07503 * 14 13 12 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.08995 * 113.77163 * 90.38050 * 23 11 9 37 37 H 1.09005 * 113.83876 * 318.91036 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.7871 -0.3698 2.5058 6 6 2.4156 -1.2461 3.3020 7 7 3.0371 -2.1211 2.5694 8 6 2.8174 -1.8216 1.2605 9 6 3.3375 -2.5583 0.0942 10 8 3.0666 -2.1849 -1.0310 11 7 4.1132 -3.6455 0.2750 12 6 4.7871 -4.5972 -0.6295 13 6 5.7611 -4.8526 0.5351 14 8 6.9075 -3.9996 0.5239 15 6 6.1119 -6.3058 0.7250 16 1 5.7116 -7.0503 0.0528 17 6 6.9439 -6.6849 1.7570 18 7 7.4318 -5.7783 2.5753 19 14 7.3782 -8.4864 1.9929 20 1 6.3825 -9.1219 2.8929 21 1 7.3665 -9.1748 0.6771 22 1 8.7308 -8.5945 2.5962 23 6 4.6317 -4.3617 1.4594 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 2.4074 -1.2275 4.3818 32 1 5.2518 -4.1262 -1.4956 33 1 4.1789 -5.4629 -0.8914 34 1 7.5071 -4.1368 1.2701 35 1 8.0169 -6.0451 3.3016 36 1 3.9765 -5.1577 1.8132 37 1 4.9728 -3.7031 2.2582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117401668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:10 Heat of formation + Delta-G solvation = -55.716651 kcal Electronic energy + Delta-G solvation = -22278.303359 eV Core-core repulsion = 18829.698478 eV Total energy + Delta-G solvation = -3448.604881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.47515 -41.10916 -39.11772 -36.69543 -35.86441 -35.70592 -34.15563 -31.13822 -30.11359 -28.14179 -27.42236 -27.00604 -24.68701 -24.31775 -22.01403 -21.37284 -20.32813 -19.40105 -18.43910 -17.82626 -17.60640 -17.16000 -16.73205 -16.30130 -16.01334 -15.86921 -15.70464 -14.95351 -14.69772 -14.37010 -14.15222 -14.08841 -13.80216 -13.42396 -13.11741 -12.90078 -12.76653 -12.70176 -12.43393 -12.27236 -12.25449 -12.22380 -12.16146 -11.68170 -11.35890 -11.01033 -10.65795 -10.27173 -10.06271 -9.57257 -8.25850 -6.43540 0.02737 1.07231 1.47059 1.49036 1.51736 1.59597 1.90838 2.21489 2.41370 2.95401 3.05432 3.43117 3.54290 3.75597 3.92840 4.05276 4.13646 4.23362 4.43834 4.51232 4.57000 4.61246 4.70971 4.78459 4.84301 4.86167 4.88861 4.98147 5.07483 5.19572 5.24291 5.26038 5.30765 5.72373 5.91843 6.47203 6.61977 6.70094 7.03694 7.29571 7.41768 8.80754 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.004450 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.263159 B = 6290.839713 C = 6679.298224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.139 4.139 4 C 0.056 3.944 5 O -0.191 6.191 6 C 0.191 3.809 7 N -0.496 5.496 8 C -0.101 4.101 9 C 0.602 3.398 10 O -0.578 6.578 11 N -0.621 5.621 12 C 0.115 3.885 13 C 0.217 3.783 14 O -0.586 6.586 15 C -0.558 4.558 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.282 1.282 23 C 0.115 3.885 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.306 0.694 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.387 0.613 35 H 0.275 0.725 36 H 0.079 0.921 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 10.237 2.402 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.001 4.001 5 O -0.077 6.077 6 C -0.038 4.038 7 N -0.224 5.224 8 C -0.220 4.220 9 C 0.392 3.608 10 O -0.461 6.461 11 N -0.352 5.352 12 C -0.007 4.007 13 C 0.176 3.824 14 O -0.398 6.398 15 C -0.596 4.596 16 H 0.092 0.908 17 C -0.168 4.168 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.193 1.193 22 H -0.207 1.207 23 C -0.008 4.008 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.321 0.679 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.983 10.327 1.645 15.905 hybrid contribution 0.493 -0.755 0.727 1.159 sum -11.490 9.572 2.373 15.142 Atomic orbital electron populations 1.21816 0.91095 1.02310 1.04232 1.20379 0.98321 0.97008 0.89449 1.21825 1.00687 0.92836 1.04273 1.24032 0.96336 0.94439 0.85337 1.84358 1.58883 1.49106 1.15347 1.29214 0.90549 0.83772 1.00260 1.70845 1.22436 1.27663 1.01427 1.21334 1.08012 1.00601 0.92015 1.16845 0.77112 0.79949 0.86864 1.90624 1.61617 1.69350 1.24549 1.50056 1.47041 1.25145 1.12976 1.23519 0.91621 0.90354 0.95167 1.20173 0.82955 0.88815 0.90436 1.86032 1.37148 1.63210 1.53385 1.21717 1.31132 0.92151 1.14603 0.90775 1.25789 0.94283 1.02516 0.94234 1.69491 1.33241 1.35358 1.17577 0.85351 0.77528 0.79043 0.78475 1.19741 1.19316 1.20746 1.23968 0.94440 0.92591 0.89806 0.90921 0.89070 0.93430 0.87479 0.93811 0.88991 0.90878 0.67949 0.91509 0.87544 0.75901 0.91477 0.90324 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.17 71.98 0.66 -1.97 16 2 C -0.03 -0.84 3.24 -11.54 -0.04 -0.88 16 3 C -0.14 -2.79 9.17 71.98 0.66 -2.13 16 4 C 0.06 1.72 5.95 25.19 0.15 1.87 16 5 O -0.19 -4.73 10.73 0.36 0.00 -4.73 16 6 C 0.19 4.51 13.19 130.52 1.72 6.23 16 7 N -0.50 -17.49 9.74 -305.14 -2.97 -20.46 16 8 C -0.10 -3.90 6.94 40.41 0.28 -3.62 16 9 C 0.60 27.14 8.05 86.66 0.70 27.83 16 10 O -0.58 -26.93 15.19 -4.06 -0.06 -26.99 16 11 N -0.62 -29.00 3.61 -843.45 -3.05 -32.05 16 12 C 0.12 5.29 8.23 86.49 0.71 6.01 16 13 C 0.22 11.02 1.40 -10.87 -0.02 11.00 16 14 O -0.59 -32.03 13.49 -148.98 -2.01 -34.04 16 15 C -0.56 -28.78 8.61 25.60 0.22 -28.56 16 16 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 17 C 0.03 1.64 5.40 84.66 0.46 2.10 16 18 N -0.92 -47.69 11.20 21.45 0.24 -47.45 16 19 Si 0.97 40.09 29.54 68.60 2.03 42.11 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.11 5.47 7.30 86.45 0.63 6.10 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 3.39 5.52 -2.39 -0.01 3.38 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.31 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.11 4.41 8.09 -2.39 -0.02 4.39 16 34 H 0.39 21.33 6.60 -74.06 -0.49 20.85 16 35 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.08 3.67 8.09 -2.39 -0.02 3.66 16 37 H 0.06 3.25 7.48 -2.38 -0.02 3.23 16 Total: -1.00 -66.50 318.42 0.93 -65.57 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.61 Total: 34.06 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 6.14 Total: 23.97 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -5.78 Total: -99.96 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -2.07 Total: -65.76 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -66.50 0.93 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117401668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.850 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds