Wall clock time and date at job start Tue Mar 31 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 N 1.46490 * 109.47298 * 180.02562 * 14 12 11 16 16 C 1.33874 * 122.76459 * 269.71258 * 15 14 12 17 17 O 1.21226 * 125.39557 * 359.97438 * 16 15 14 18 18 C 1.51319 * 109.20869 * 179.83908 * 16 15 14 19 19 C 1.54231 * 103.55452 * 0.38778 * 18 16 15 20 20 C 1.33886 * 122.76075 * 90.00022 * 15 14 12 21 21 O 1.21225 * 125.39295 * 359.97438 * 20 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.08993 * 110.80166 * 241.77956 * 18 16 15 31 31 H 1.08999 * 110.41291 * 118.81123 * 18 16 15 32 32 H 1.08994 * 110.60745 * 241.26000 * 19 18 16 33 33 H 1.09000 * 110.60659 * 118.29057 * 19 18 16 34 34 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 35 35 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 36 36 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 37 37 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 7 3.0560 -4.6059 5.5620 16 6 2.8970 -3.8351 6.6450 17 8 2.9982 -2.6273 6.6683 18 6 2.5677 -4.7101 7.8348 19 6 2.5738 -6.1362 7.2475 20 6 2.9003 -5.9166 5.7863 21 8 3.0040 -6.7891 4.9511 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 1.5843 -4.4646 8.2355 31 1 3.3328 -4.6090 8.6045 32 1 1.5934 -6.5999 7.3559 33 1 3.3419 -6.7445 7.7250 34 1 2.3246 -3.3504 -1.6826 35 1 1.5428 -4.6177 -0.5940 36 1 -0.6578 -3.3605 -0.7110 37 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123724855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:13 Heat of formation + Delta-G solvation = -75.461535 kcal Electronic energy + Delta-G solvation = -21874.344947 eV Core-core repulsion = 18424.883864 eV Total energy + Delta-G solvation = -3449.461083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99612 -38.99274 -38.62748 -36.72372 -35.87252 -33.54783 -33.39536 -31.97999 -28.59324 -26.34396 -26.01276 -24.95334 -22.50669 -21.24791 -20.55528 -19.64952 -19.14243 -17.59108 -17.43259 -16.57433 -16.37173 -16.00427 -15.11383 -14.92444 -14.60569 -14.49046 -14.29541 -14.06141 -14.03644 -13.64887 -13.13456 -12.97020 -12.65903 -12.42839 -11.69825 -11.61790 -11.57213 -10.99497 -10.96422 -10.79649 -10.56001 -10.38558 -10.24586 -10.15118 -9.62874 -9.26978 -9.07404 -8.51782 -8.34045 -8.14790 -6.09116 -4.19552 1.42981 2.25938 2.63886 2.99545 3.26650 3.32737 3.34012 3.76149 3.89058 4.03666 4.21785 4.34094 4.60214 5.02232 5.03231 5.17324 5.18404 5.19309 5.27771 5.34465 5.36712 5.43756 5.99824 6.31244 6.43858 6.52037 6.68631 6.69168 6.81338 7.09889 7.16858 7.21005 7.35784 7.50373 7.64469 7.78989 8.13577 8.31005 8.68792 8.81944 9.48078 10.98035 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004518 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.371225 B = 6196.432424 C = 6972.652576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.164 3.836 11 N -0.696 5.696 12 C 0.494 3.506 13 O -0.550 6.550 14 C 0.077 3.923 15 N -0.556 5.556 16 C 0.529 3.471 17 O -0.477 6.477 18 C -0.154 4.154 19 C -0.154 4.154 20 C 0.531 3.469 21 O -0.482 6.482 22 C -0.210 4.210 23 C -0.141 4.141 24 H 0.262 0.738 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.403 0.597 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -10.420 13.324 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.041 3.959 11 N -0.345 5.345 12 C 0.277 3.723 13 O -0.429 6.429 14 C -0.048 4.048 15 N -0.299 5.299 16 C 0.318 3.682 17 O -0.348 6.348 18 C -0.193 4.193 19 C -0.193 4.193 20 C 0.320 3.680 21 O -0.353 6.353 22 C -0.247 4.247 23 C -0.179 4.179 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.237 0.763 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.367 -10.231 13.276 17.930 hybrid contribution 0.718 1.146 -0.443 1.424 sum 7.085 -9.085 12.833 17.246 Atomic orbital electron populations 1.69975 1.05922 1.27055 1.48075 1.24991 0.94825 0.99009 0.94212 0.86681 0.79682 0.83120 0.78660 1.20251 1.21244 1.20077 1.20302 0.92601 0.88534 1.52526 0.92189 1.19040 0.99575 0.93406 0.85807 1.21039 0.83807 0.97995 0.93022 1.45896 1.11713 1.62248 1.14620 1.20513 0.90611 0.78525 0.82657 1.90666 1.30490 1.53892 1.67873 1.21629 0.97367 1.02826 0.82984 1.46281 1.63288 1.09849 1.10468 1.20806 0.74400 0.87767 0.85213 1.90803 1.46522 1.12530 1.84957 1.22443 1.06595 0.93095 0.97197 1.22441 1.06556 0.98333 0.91997 1.20793 0.74233 0.81255 0.91705 1.90777 1.46867 1.46017 1.51664 1.23026 1.00730 0.95558 1.05432 1.22464 0.90786 1.01293 1.03375 0.92767 0.91334 0.94077 0.76276 0.86128 0.85951 0.86006 0.86236 0.86056 0.86214 0.90315 0.91697 0.91840 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.35 12.65 55.43 0.70 -23.64 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.50 -12.86 8.59 -34.44 -0.30 -13.16 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 10 C 0.16 3.75 5.50 -4.05 -0.02 3.73 16 11 N -0.70 -13.48 5.48 -60.30 -0.33 -13.81 16 12 C 0.49 9.30 7.90 -10.98 -0.09 9.22 16 13 O -0.55 -12.34 16.43 5.56 0.09 -12.25 16 14 C 0.08 1.08 6.04 -5.20 -0.03 1.05 16 15 N -0.56 -7.36 2.04 -116.62 -0.24 -7.60 16 16 C 0.53 6.68 8.08 -11.08 -0.09 6.59 16 17 O -0.48 -7.84 17.47 5.60 0.10 -7.74 16 18 C -0.15 -1.05 7.03 -26.94 -0.19 -1.24 16 19 C -0.15 -1.02 7.03 -26.94 -0.19 -1.21 16 20 C 0.53 6.47 8.08 -11.08 -0.09 6.38 16 21 O -0.48 -7.46 17.48 5.60 0.10 -7.37 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 23 C -0.14 -3.25 9.14 -26.69 -0.24 -3.50 16 24 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 25 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 26 H 0.04 0.94 8.09 -51.92 -0.42 0.52 16 27 H 0.40 6.96 8.33 -40.82 -0.34 6.62 16 28 H 0.12 1.42 7.83 -51.93 -0.41 1.01 16 29 H 0.12 1.53 7.82 -51.92 -0.41 1.12 16 30 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -34.45 328.13 -6.41 -40.86 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.92 Total: 5.62 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.83 Total: 5.36 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.13 Total: -45.06 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: 0.29 Total: -27.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.45 -6.41 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123724855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.599 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds