Wall clock time and date at job start Tue Mar 31 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 N 1.46490 * 109.47298 * 180.02562 * 14 12 11 16 16 C 1.33874 * 122.76459 * 269.71258 * 15 14 12 17 17 O 1.21226 * 125.39557 * 359.97438 * 16 15 14 18 18 C 1.51319 * 109.20869 * 179.83908 * 16 15 14 19 19 C 1.54231 * 103.55452 * 0.38778 * 18 16 15 20 20 C 1.33886 * 122.76075 * 90.00022 * 15 14 12 21 21 O 1.21225 * 125.39295 * 359.97438 * 20 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.08993 * 110.80166 * 241.77956 * 18 16 15 31 31 H 1.08999 * 110.41291 * 118.81123 * 18 16 15 32 32 H 1.08994 * 110.60745 * 241.26000 * 19 18 16 33 33 H 1.09000 * 110.60659 * 118.29057 * 19 18 16 34 34 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 35 35 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 36 36 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 37 37 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 7 3.0560 -4.6059 5.5620 16 6 2.8970 -3.8351 6.6450 17 8 2.9982 -2.6273 6.6683 18 6 2.5677 -4.7101 7.8348 19 6 2.5738 -6.1362 7.2475 20 6 2.9003 -5.9166 5.7863 21 8 3.0040 -6.7891 4.9511 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 1.5843 -4.4646 8.2355 31 1 3.3328 -4.6090 8.6045 32 1 1.5934 -6.5999 7.3559 33 1 3.3419 -6.7445 7.7250 34 1 2.3246 -3.3504 -1.6826 35 1 1.5428 -4.6177 -0.5940 36 1 -0.6578 -3.3605 -0.7110 37 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123724855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:12 Heat of formation + Delta-G solvation = -100.186409 kcal Electronic energy + Delta-G solvation = -21875.417098 eV Core-core repulsion = 18424.883864 eV Total energy + Delta-G solvation = -3450.533234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.95026 -40.55666 -39.66060 -38.52018 -36.91560 -35.10924 -34.37199 -33.97920 -29.85236 -27.83350 -27.10695 -26.71426 -23.32018 -23.01140 -21.95825 -21.37426 -20.42397 -18.89986 -18.51275 -17.96625 -17.53396 -17.33829 -16.73811 -16.50569 -16.30818 -15.69755 -15.51032 -15.28244 -14.99746 -14.91545 -14.54155 -14.23985 -13.99639 -13.57101 -13.48609 -13.21426 -12.96167 -12.81329 -12.41226 -12.09383 -12.06033 -11.78287 -11.67208 -11.43030 -11.11735 -10.98185 -10.74402 -10.47075 -10.11494 -9.94939 -8.11966 -6.26658 0.50728 1.28803 1.41641 1.44077 1.48965 1.49740 1.73169 2.33241 2.41343 3.16087 3.22328 3.26781 3.44003 3.65266 3.71840 3.99025 4.10405 4.18309 4.21617 4.29240 4.49201 4.59421 4.67471 4.76299 4.92174 4.92614 4.93490 4.98481 5.24518 5.46434 5.51409 5.65278 5.75051 5.77033 6.30411 6.32810 6.54069 6.72160 6.81268 7.17007 7.43635 8.94966 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004518 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.371225 B = 6196.432424 C = 6972.652576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.000 4.000 10 C 0.181 3.819 11 N -0.692 5.692 12 C 0.488 3.512 13 O -0.590 6.590 14 C 0.081 3.919 15 N -0.567 5.567 16 C 0.518 3.482 17 O -0.526 6.526 18 C -0.138 4.138 19 C -0.137 4.137 20 C 0.521 3.479 21 O -0.522 6.522 22 C -0.175 4.175 23 C -0.153 4.153 24 H 0.259 0.741 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.414 0.586 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -11.716 14.918 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.000 4.000 10 C 0.057 3.943 11 N -0.342 5.342 12 C 0.274 3.726 13 O -0.472 6.472 14 C -0.045 4.045 15 N -0.309 5.309 16 C 0.310 3.690 17 O -0.401 6.401 18 C -0.177 4.177 19 C -0.176 4.176 20 C 0.313 3.687 21 O -0.397 6.397 22 C -0.212 4.212 23 C -0.191 4.191 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.251 0.749 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.192 -11.550 14.880 20.540 hybrid contribution 0.152 1.509 -0.949 1.789 sum 8.344 -10.040 13.931 19.092 Atomic orbital electron populations 1.70106 1.07311 1.27412 1.49749 1.25719 0.95479 1.02154 0.94317 0.85741 0.78410 0.79365 0.78892 1.19169 1.21759 1.19830 1.20642 0.93043 0.89398 1.51231 0.91557 1.19076 1.00448 0.94144 0.86360 1.20579 0.84893 0.96199 0.92656 1.45780 1.11046 1.62359 1.15027 1.21391 0.91890 0.77093 0.82197 1.90634 1.32555 1.55370 1.68628 1.21617 0.94656 1.04393 0.83811 1.46635 1.63294 1.10775 1.10152 1.21915 0.72842 0.87665 0.86565 1.90775 1.48731 1.14750 1.85795 1.22599 1.08493 0.91315 0.95277 1.22597 1.08606 0.98812 0.87574 1.21845 0.72796 0.80197 0.93840 1.90753 1.48669 1.46795 1.53443 1.23002 0.98926 0.95779 1.03536 1.22385 0.92077 1.01796 1.02826 0.93197 0.95634 0.94479 0.74941 0.83750 0.84561 0.84525 0.82417 0.84411 0.82275 0.89410 0.89533 0.91417 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.92 12.65 21.45 0.27 -51.65 16 2 C 0.02 1.29 5.43 84.65 0.46 1.75 16 3 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.51 -25.88 8.59 25.60 0.22 -25.66 16 8 H 0.07 3.24 7.82 -2.91 -0.02 3.21 16 9 C 0.00 0.02 1.47 -52.93 -0.08 -0.06 16 10 C 0.18 8.47 5.50 86.38 0.48 8.95 16 11 N -0.69 -26.95 5.48 -463.07 -2.54 -29.49 16 12 C 0.49 18.55 7.90 87.66 0.69 19.24 16 13 O -0.59 -27.06 16.43 -3.02 -0.05 -27.11 16 14 C 0.08 2.19 6.04 85.63 0.52 2.71 16 15 N -0.57 -14.28 2.04 -760.71 -1.55 -15.84 16 16 C 0.52 12.30 8.08 87.99 0.71 13.01 16 17 O -0.53 -17.15 17.47 -2.86 -0.05 -17.20 16 18 C -0.14 -1.36 7.03 30.46 0.21 -1.15 16 19 C -0.14 -1.27 7.03 30.46 0.21 -1.05 16 20 C 0.52 11.69 8.08 87.99 0.71 12.40 16 21 O -0.52 -15.59 17.48 -2.86 -0.05 -15.64 16 22 C -0.18 -7.08 9.96 30.62 0.30 -6.77 16 23 C -0.15 -7.10 9.14 30.62 0.28 -6.82 16 24 H 0.26 14.34 8.32 -92.71 -0.77 13.56 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.74 8.09 -2.38 -0.02 1.72 16 27 H 0.41 14.05 8.33 -92.71 -0.77 13.28 16 28 H 0.14 3.20 7.83 -2.38 -0.02 3.18 16 29 H 0.14 3.31 7.82 -2.38 -0.02 3.29 16 30 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -78.25 328.13 3.10 -75.15 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.32 Total: 20.57 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 4.72 Total: 16.55 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.82 Total: -96.98 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -0.15 Total: -59.95 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -78.25 3.10 -75.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123724855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.040 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds