Wall clock time and date at job start Tue Mar 31 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48500 * 109.46819 * 239.99730 * 3 2 1 5 5 H 1.48496 * 109.47515 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47211 * 120.00016 * 3 2 1 7 7 C 1.38809 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99790 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00189 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47051 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00546 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99530 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.52994 * 112.85110 * 48.79952 * 15 13 12 17 17 F 1.39894 * 109.47554 * 191.19753 * 16 15 13 18 18 F 1.39895 * 109.47319 * 311.20359 * 16 15 13 19 19 F 1.39904 * 109.46654 * 71.19949 * 16 15 13 20 20 C 1.53782 * 113.61498 * 180.02562 * 15 13 12 21 21 C 1.53781 * 87.08260 * 89.19810 * 20 15 13 22 22 C 1.53786 * 87.17350 * 25.39213 * 21 20 15 23 23 H 0.97004 * 120.00522 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99748 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47191 * 59.99260 * 10 9 7 26 26 H 1.09002 * 109.46596 * 299.99548 * 10 9 7 27 27 H 1.08998 * 109.47708 * 59.99601 * 11 10 9 28 28 H 1.09002 * 109.47253 * 299.99803 * 11 10 9 29 29 H 0.97001 * 119.99856 * 359.97438 * 12 11 10 30 30 H 1.09001 * 113.61250 * 334.64628 * 20 15 13 31 31 H 1.08997 * 113.61225 * 203.74469 * 20 15 13 32 32 H 1.09002 * 113.61445 * 139.98212 * 21 20 15 33 33 H 1.09002 * 113.61408 * 270.79943 * 21 20 15 34 34 H 1.08993 * 113.61491 * 89.15923 * 22 21 20 35 35 H 1.09000 * 113.61138 * 220.06261 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8196 0.0021 12 7 1.7963 -6.0884 0.0026 13 6 1.1224 -7.2556 0.0035 14 8 -0.0904 -7.2556 0.0035 15 6 1.8759 -8.5607 0.0046 16 6 2.9772 -8.6100 1.0655 17 9 3.7893 -9.7272 0.8431 18 9 3.7517 -7.4476 0.9882 19 9 2.3974 -8.7004 2.3356 20 6 0.9637 -9.7987 0.0050 21 6 0.9935 -9.7239 -1.5307 22 6 2.3450 -9.0032 -1.3934 23 1 -0.4851 0.8400 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6841 -3.7141 0.8921 26 1 2.6853 -3.7149 -0.8879 27 1 0.4374 -4.7625 -0.8881 28 1 0.4368 -4.7613 0.8918 29 1 2.7663 -6.0884 0.0023 30 1 -0.0221 -9.6145 0.4321 31 1 1.4404 -10.6923 0.4079 32 1 1.0653 -10.6983 -2.0140 33 1 0.2063 -9.0991 -1.9528 34 1 3.2001 -9.6788 -1.3736 35 1 2.4727 -8.1777 -2.0937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130316035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:48 Heat of formation + Delta-G solvation = -176.494337 kcal Electronic energy + Delta-G solvation = -22564.860273 eV Core-core repulsion = 18569.161338 eV Total energy + Delta-G solvation = -3995.698935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.32269 -48.85332 -48.75332 -41.77463 -38.83062 -37.28946 -35.62015 -33.23525 -30.53875 -29.05263 -26.90082 -25.93637 -24.75001 -23.26234 -22.76085 -20.69533 -19.62226 -19.54179 -19.33484 -19.29329 -17.40454 -17.21642 -16.68539 -16.52542 -16.09947 -15.67340 -15.53933 -15.38078 -15.21787 -15.15064 -15.06355 -14.94164 -14.91076 -14.56261 -13.95804 -13.48710 -13.41515 -13.10424 -13.05331 -12.65731 -12.57934 -12.14125 -12.08807 -11.87807 -11.76643 -11.66384 -11.17405 -10.99891 -10.32955 -9.08888 -7.97806 -5.29694 1.02464 1.48172 1.51959 1.57865 1.62561 1.74760 2.49902 2.55575 2.67113 2.83753 3.29253 3.36313 3.42924 3.50775 3.66545 3.92682 4.11993 4.15080 4.24568 4.51504 4.56577 4.64345 4.79205 4.88609 4.93576 5.01516 5.06631 5.20634 5.28839 5.47045 6.22474 6.24328 6.89700 7.29241 7.99489 8.23519 9.25514 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.003632 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.888170 B = 7708.001894 C = 8106.401914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.082 0.918 9 N -0.745 5.745 10 C 0.148 3.852 11 C 0.126 3.874 12 N -0.709 5.709 13 C 0.536 3.464 14 O -0.552 6.552 15 C -0.174 4.174 16 C 0.472 3.528 17 F -0.162 7.162 18 F -0.180 7.180 19 F -0.184 7.184 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.106 4.106 23 H 0.253 0.747 24 H 0.375 0.625 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.414 0.586 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -24.543 -1.854 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.100 0.900 9 N -0.389 5.389 10 C 0.021 3.979 11 C 0.002 3.998 12 N -0.365 5.365 13 C 0.321 3.679 14 O -0.430 6.430 15 C -0.178 4.178 16 C 0.418 3.582 17 F -0.144 7.144 18 F -0.162 7.162 19 F -0.166 7.166 20 C -0.144 4.144 21 C -0.165 4.165 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.207 0.793 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.255 0.745 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.425 -24.410 -1.825 25.579 hybrid contribution 0.358 1.357 0.500 1.490 sum 7.783 -23.053 -1.325 24.368 Atomic orbital electron populations 1.69821 1.06809 1.26436 1.58886 1.25650 0.96416 1.01389 1.03093 0.85135 0.77150 0.78634 0.78351 1.20044 1.22171 1.20214 1.19606 0.91713 0.84866 1.42207 0.90038 1.42381 1.05751 1.00920 1.89842 1.20830 0.93610 0.84230 0.99226 1.21255 0.94808 0.81996 1.01778 1.46091 1.11773 1.04956 1.73632 1.19643 0.87482 0.84513 0.76284 1.90726 1.14577 1.87424 1.50253 1.23737 0.97102 0.97608 0.99384 1.20041 0.82530 0.73813 0.81844 1.93191 1.74464 1.52309 1.94404 1.93061 1.77345 1.49643 1.96120 1.93212 1.84278 1.95882 1.43196 1.22990 0.99103 0.93074 0.99197 1.22775 0.96106 1.02802 0.94824 1.23196 1.00582 1.01802 0.88749 0.93824 0.79317 0.94917 0.94312 0.91743 0.92426 0.74546 0.90198 0.85817 0.87009 0.90781 0.84939 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.75 -38.14 5.60 -343.46 -1.92 -40.06 16 10 C 0.15 5.77 6.37 86.38 0.55 6.32 16 11 C 0.13 4.36 5.79 86.38 0.50 4.86 16 12 N -0.71 -19.69 5.25 -463.08 -2.43 -22.12 16 13 C 0.54 14.77 6.65 87.66 0.58 15.35 16 14 O -0.55 -19.20 15.76 -3.04 -0.05 -19.25 16 15 C -0.17 -3.30 0.88 -52.34 -0.05 -3.34 16 16 C 0.47 9.07 2.66 71.98 0.19 9.26 16 17 F -0.16 -2.56 15.76 44.97 0.71 -1.85 16 18 F -0.18 -3.69 14.41 44.97 0.65 -3.04 16 19 F -0.18 -4.22 17.17 44.97 0.77 -3.45 16 20 C -0.11 -1.66 6.81 31.12 0.21 -1.45 16 21 C -0.13 -1.67 7.73 31.12 0.24 -1.43 16 22 C -0.11 -1.34 7.11 31.18 0.22 -1.12 16 23 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.37 20.58 7.67 -92.71 -0.71 19.87 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.41 9.78 5.94 -92.71 -0.55 9.23 16 30 H 0.08 1.59 7.43 -2.39 -0.02 1.58 16 31 H 0.12 1.32 7.88 -2.39 -0.02 1.30 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.29 8.08 -2.39 -0.02 1.28 16 34 H 0.13 1.06 7.14 -2.39 -0.02 1.04 16 35 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -68.03 306.47 3.67 -64.36 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.12 Total: 25.54 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 3.76 Total: 11.52 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -4.07 Total: -121.56 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 2.13 Total: -8.33 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.03 3.67 -64.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130316035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.135 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds