Wall clock time and date at job start Tue Mar 31 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48497 * 109.47249 * 239.99752 * 3 2 1 5 5 H 1.48493 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47162 * 120.00015 * 3 2 1 7 7 C 1.38808 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00101 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47067 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46683 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99581 * 180.02562 * 12 11 10 14 14 O 1.21693 * 120.00091 * 0.02562 * 13 12 11 15 15 C 1.46652 * 119.99711 * 179.97438 * 13 12 11 16 16 O 1.35387 * 126.12289 * 359.97438 * 15 13 12 17 17 C 1.34402 * 109.48247 * 179.97438 * 16 15 13 18 18 C 1.33905 * 108.55522 * 359.95940 * 17 16 15 19 19 C 1.35197 * 126.11714 * 179.97438 * 15 13 12 20 20 C 1.50485 * 130.60963 * 0.27441 * 19 15 13 21 21 C 1.53679 * 107.55870 * 164.09643 * 20 19 15 22 22 O 1.42904 * 109.89275 * 48.27131 * 21 20 19 23 23 C 1.43515 * 114.76350 * 287.67711 * 22 21 20 24 24 H 0.96995 * 120.00013 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99878 * 0.02562 * 9 7 2 26 26 H 1.09007 * 109.46700 * 60.00319 * 10 9 7 27 27 H 1.08999 * 109.47440 * 300.00658 * 10 9 7 28 28 H 1.09000 * 109.46675 * 60.00741 * 11 10 9 29 29 H 1.08995 * 109.47139 * 300.00384 * 11 10 9 30 30 H 0.96999 * 120.00404 * 0.02562 * 12 11 10 31 31 H 1.08000 * 125.72474 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.74375 * 44.61363 * 20 19 15 33 33 H 1.09003 * 109.86575 * 283.65291 * 20 19 15 34 34 H 1.09002 * 109.38705 * 288.16620 * 21 20 19 35 35 H 1.08996 * 109.38325 * 168.37307 * 21 20 19 36 36 H 1.09000 * 109.82084 * 171.04271 * 23 22 21 37 37 H 1.09008 * 109.82098 * 291.90152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7966 -6.0883 0.0018 13 6 1.1227 -7.2556 0.0019 14 8 -0.0942 -7.2557 0.0010 15 6 1.8560 -8.5256 0.0020 16 8 3.2022 -8.6699 0.0014 17 6 3.5129 -9.9775 0.0022 18 6 2.3763 -10.6855 0.0042 19 6 1.3088 -9.7619 0.0026 20 6 -0.1324 -10.1951 -0.0022 21 6 -0.1691 -11.6789 -0.4005 22 8 0.7862 -12.4126 0.3684 23 6 2.1555 -12.1766 0.0095 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0002 26 1 2.6848 -3.7144 0.8906 27 1 2.6849 -3.7145 -0.8894 28 1 0.4371 -4.7622 -0.8887 29 1 0.4376 -4.7617 0.8913 30 1 2.7666 -6.0883 0.0021 31 1 4.5116 -10.3884 0.0017 32 1 -0.6924 -9.6033 -0.7262 33 1 -0.5607 -10.0678 0.9921 34 1 0.0684 -11.7751 -1.4599 35 1 -1.1662 -12.0785 -0.2155 36 1 2.8151 -12.6457 0.7396 37 1 2.3531 -12.5837 -0.9822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131858161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:19 Heat of formation + Delta-G solvation = -53.398837 kcal Electronic energy + Delta-G solvation = -21004.639419 eV Core-core repulsion = 17556.135046 eV Total energy + Delta-G solvation = -3448.504373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.09466 -39.40920 -38.86106 -35.82072 -34.12235 -33.65956 -32.37267 -31.31273 -29.70019 -27.67454 -26.56217 -24.41021 -23.57982 -22.64731 -21.50550 -20.11662 -19.97441 -18.25988 -17.27436 -16.81756 -16.54155 -16.32019 -15.65061 -15.55308 -15.22957 -15.11571 -14.57628 -14.15555 -13.81533 -13.62934 -13.43910 -13.20278 -12.96629 -12.87378 -12.50889 -11.87991 -11.51533 -11.22250 -11.13831 -10.86919 -10.80976 -10.43745 -10.16032 -10.04130 -9.77031 -9.73372 -9.16030 -8.93919 -8.76892 -7.01608 -5.80943 -3.11991 0.86712 1.93169 2.45024 3.09245 3.16851 3.42123 3.44272 3.46623 3.47888 4.13116 4.33372 4.55226 4.59127 4.66346 4.87996 4.92604 4.98354 5.15222 5.34322 5.45287 5.47968 5.51633 5.58616 5.68757 5.72452 5.78498 5.91392 6.03712 6.08619 6.37090 6.50062 6.66395 6.68757 6.77362 7.47440 7.64202 8.07148 8.36586 9.47848 10.01861 10.36810 11.41580 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048360 B = 0.002723 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.848840 B =10279.356177 C =10807.176300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.110 3.890 12 N -0.710 5.710 13 C 0.598 3.402 14 O -0.517 6.517 15 C -0.060 4.060 16 O -0.166 6.166 17 C 0.013 3.987 18 C -0.240 4.240 19 C -0.087 4.087 20 C -0.088 4.088 21 C 0.063 3.937 22 O -0.380 6.380 23 C 0.136 3.864 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.405 0.595 31 H 0.212 0.788 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -26.323 -1.126 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.360 5.360 13 C 0.383 3.617 14 O -0.395 6.395 15 C -0.111 4.111 16 O -0.062 6.062 17 C -0.056 4.056 18 C -0.242 4.242 19 C -0.090 4.090 20 C -0.125 4.125 21 C -0.014 4.014 22 O -0.298 6.298 23 C 0.060 3.940 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.239 0.761 31 H 0.228 0.772 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.269 -26.015 -0.983 26.561 hybrid contribution 0.855 1.069 -0.194 1.383 sum 6.124 -24.945 -1.177 25.713 Atomic orbital electron populations 1.69655 1.05160 1.26013 1.57071 1.24782 0.95572 0.97833 1.02587 0.86214 0.78494 0.83247 0.77879 1.21170 1.21587 1.21168 1.19147 0.91027 0.83828 1.43641 0.91056 1.42171 1.06003 0.99506 1.89761 1.20757 0.93442 0.85587 0.98603 1.21683 0.95531 0.81153 1.02963 1.45849 1.10848 1.05744 1.73567 1.16490 0.86340 0.81222 0.77597 1.90882 1.11779 1.86121 1.50746 1.21522 0.80455 0.95642 1.13483 1.84327 1.23072 1.27113 1.71735 1.23610 0.99791 0.79886 1.02349 1.21018 0.93211 0.98712 1.11217 1.20142 0.97358 0.90754 1.00765 1.20854 0.90916 0.96361 1.04363 1.22719 0.93073 0.90713 0.94896 1.87984 1.14703 1.66123 1.60991 1.21026 0.83832 0.88196 1.00992 0.93273 0.77966 0.95662 0.95669 0.90813 0.90807 0.76051 0.77164 0.88311 0.89020 0.92754 0.87980 0.87622 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.56 5.60 -59.91 -0.34 -18.89 16 10 C 0.14 2.84 6.37 -4.04 -0.03 2.81 16 11 C 0.11 1.89 5.79 -4.04 -0.02 1.87 16 12 N -0.71 -10.33 5.55 -61.63 -0.34 -10.68 16 13 C 0.60 9.21 7.79 -12.86 -0.10 9.11 16 14 O -0.52 -9.33 15.63 5.20 0.08 -9.25 16 15 C -0.06 -0.79 7.11 -37.27 -0.27 -1.05 16 16 O -0.17 -1.85 10.44 2.35 0.02 -1.83 16 17 C 0.01 0.11 12.06 29.21 0.35 0.46 16 18 C -0.24 -2.30 6.04 -105.02 -0.63 -2.94 16 19 C -0.09 -1.06 6.02 -104.70 -0.63 -1.69 16 20 C -0.09 -0.97 5.69 -27.63 -0.16 -1.12 16 21 C 0.06 0.55 6.76 37.51 0.25 0.80 16 22 O -0.38 -3.76 10.70 -35.23 -0.38 -4.13 16 23 C 0.14 1.03 7.27 36.02 0.26 1.29 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.40 4.99 8.24 -40.82 -0.34 4.65 16 31 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.10 1.13 7.63 -51.93 -0.40 0.74 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -33.85 319.20 -6.47 -40.32 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.82 Total: 7.82 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.21 Total: 2.09 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.05 Total: -57.11 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.27 Total: -15.21 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.85 -6.47 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131858161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.081 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds