Wall clock time and date at job start Tue Mar 31 2020 01:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48497 * 109.47249 * 239.99752 * 3 2 1 5 5 H 1.48493 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47162 * 120.00015 * 3 2 1 7 7 C 1.38808 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00101 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47067 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46683 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99581 * 180.02562 * 12 11 10 14 14 O 1.21693 * 120.00091 * 0.02562 * 13 12 11 15 15 C 1.46652 * 119.99711 * 179.97438 * 13 12 11 16 16 O 1.35387 * 126.12289 * 359.97438 * 15 13 12 17 17 C 1.34402 * 109.48247 * 179.97438 * 16 15 13 18 18 C 1.33905 * 108.55522 * 359.95940 * 17 16 15 19 19 C 1.35197 * 126.11714 * 179.97438 * 15 13 12 20 20 C 1.50485 * 130.60963 * 0.27441 * 19 15 13 21 21 C 1.53679 * 107.55870 * 164.09643 * 20 19 15 22 22 O 1.42904 * 109.89275 * 48.27131 * 21 20 19 23 23 C 1.43515 * 114.76350 * 287.67711 * 22 21 20 24 24 H 0.96995 * 120.00013 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99878 * 0.02562 * 9 7 2 26 26 H 1.09007 * 109.46700 * 60.00319 * 10 9 7 27 27 H 1.08999 * 109.47440 * 300.00658 * 10 9 7 28 28 H 1.09000 * 109.46675 * 60.00741 * 11 10 9 29 29 H 1.08995 * 109.47139 * 300.00384 * 11 10 9 30 30 H 0.96999 * 120.00404 * 0.02562 * 12 11 10 31 31 H 1.08000 * 125.72474 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.74375 * 44.61363 * 20 19 15 33 33 H 1.09003 * 109.86575 * 283.65291 * 20 19 15 34 34 H 1.09002 * 109.38705 * 288.16620 * 21 20 19 35 35 H 1.08996 * 109.38325 * 168.37307 * 21 20 19 36 36 H 1.09000 * 109.82084 * 171.04271 * 23 22 21 37 37 H 1.09008 * 109.82098 * 291.90152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7966 -6.0883 0.0018 13 6 1.1227 -7.2556 0.0019 14 8 -0.0942 -7.2557 0.0010 15 6 1.8560 -8.5256 0.0020 16 8 3.2022 -8.6699 0.0014 17 6 3.5129 -9.9775 0.0022 18 6 2.3763 -10.6855 0.0042 19 6 1.3088 -9.7619 0.0026 20 6 -0.1324 -10.1951 -0.0022 21 6 -0.1691 -11.6789 -0.4005 22 8 0.7862 -12.4126 0.3684 23 6 2.1555 -12.1766 0.0095 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0002 26 1 2.6848 -3.7144 0.8906 27 1 2.6849 -3.7145 -0.8894 28 1 0.4371 -4.7622 -0.8887 29 1 0.4376 -4.7617 0.8913 30 1 2.7666 -6.0883 0.0021 31 1 4.5116 -10.3884 0.0017 32 1 -0.6924 -9.6033 -0.7262 33 1 -0.5607 -10.0678 0.9921 34 1 0.0684 -11.7751 -1.4599 35 1 -1.1662 -12.0785 -0.2155 36 1 2.8151 -12.6457 0.7396 37 1 2.3531 -12.5837 -0.9822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131858161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:18 Heat of formation + Delta-G solvation = -79.431169 kcal Electronic energy + Delta-G solvation = -21005.768266 eV Core-core repulsion = 17556.135046 eV Total energy + Delta-G solvation = -3449.633220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.90700 -40.65099 -39.55316 -37.42016 -35.66879 -34.63346 -33.32646 -32.98533 -30.79638 -29.19584 -27.20395 -25.95895 -24.66701 -23.86596 -23.03518 -21.18350 -20.76166 -19.44614 -19.06555 -17.68461 -17.36590 -17.27493 -16.83920 -16.54354 -16.50461 -16.16093 -15.93420 -15.46856 -15.13080 -15.09450 -14.82208 -14.48180 -14.19096 -13.67175 -13.25055 -13.15398 -13.06475 -12.66102 -12.58912 -12.58339 -12.14445 -11.96261 -11.87951 -11.53053 -11.00181 -10.82759 -10.55858 -10.33895 -9.66346 -9.09092 -7.98182 -5.30096 -0.06598 1.18899 1.47400 1.51620 1.54030 1.58167 1.96300 2.07075 2.56675 2.82450 3.35836 3.37916 3.56792 3.76248 3.91460 3.94032 4.11859 4.16035 4.18847 4.28405 4.36189 4.51283 4.52578 4.71033 4.77558 4.80231 4.91594 4.95969 5.03895 5.07575 5.18594 5.26942 5.46636 5.70838 6.13691 6.22317 6.33690 6.89964 7.28793 7.99453 8.23148 9.25274 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048360 B = 0.002723 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.848840 B =10279.356177 C =10807.176300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.746 5.746 10 C 0.149 3.851 11 C 0.128 3.872 12 N -0.701 5.701 13 C 0.598 3.402 14 O -0.554 6.554 15 C -0.093 4.093 16 O -0.172 6.172 17 C 0.040 3.960 18 C -0.256 4.256 19 C -0.094 4.094 20 C -0.092 4.092 21 C 0.068 3.932 22 O -0.397 6.397 23 C 0.133 3.867 24 H 0.253 0.747 25 H 0.375 0.625 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.417 0.583 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -28.092 -1.298 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.390 5.390 10 C 0.022 3.978 11 C 0.003 3.997 12 N -0.352 5.352 13 C 0.385 3.615 14 O -0.435 6.435 15 C -0.144 4.144 16 O -0.068 6.068 17 C -0.029 4.029 18 C -0.257 4.257 19 C -0.098 4.098 20 C -0.129 4.129 21 C -0.009 4.009 22 O -0.316 6.316 23 C 0.057 3.943 24 H 0.062 0.938 25 H 0.207 0.793 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.254 0.746 31 H 0.279 0.721 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.980 -27.823 -1.156 28.968 hybrid contribution 0.116 1.458 -0.136 1.469 sum 8.096 -26.365 -1.291 27.611 Atomic orbital electron populations 1.69827 1.06830 1.26453 1.58944 1.25682 0.96452 1.01487 1.03180 0.85117 0.77123 0.78557 0.78365 1.20074 1.22209 1.20116 1.19612 0.91735 0.84842 1.42089 0.89953 1.42395 1.05787 1.00968 1.89842 1.20828 0.93545 0.84080 0.99325 1.21271 0.94829 0.81724 1.01846 1.45636 1.11308 1.04681 1.73567 1.16767 0.86128 0.81984 0.76613 1.90852 1.13400 1.86826 1.52422 1.21010 0.81591 0.94679 1.17102 1.84316 1.21742 1.28865 1.71927 1.24651 1.01494 0.78365 0.98406 1.21352 0.92691 0.99665 1.12014 1.20527 0.98517 0.91265 0.99443 1.20885 0.90529 0.98147 1.03352 1.22742 0.93954 0.88877 0.95327 1.87959 1.15925 1.66113 1.61612 1.21342 0.83054 0.86877 1.02992 0.93818 0.79324 0.94513 0.94439 0.91973 0.92085 0.74574 0.72113 0.89568 0.90239 0.91639 0.86455 0.85218 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 3 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -38.30 5.60 -343.45 -1.92 -40.22 16 10 C 0.15 5.80 6.37 86.38 0.55 6.35 16 11 C 0.13 4.47 5.79 86.38 0.50 4.97 16 12 N -0.70 -20.44 5.55 -467.10 -2.59 -23.03 16 13 C 0.60 18.83 7.79 86.44 0.67 19.50 16 14 O -0.55 -20.97 15.63 -4.33 -0.07 -21.04 16 15 C -0.09 -2.42 7.11 23.77 0.17 -2.25 16 16 O -0.17 -3.48 10.44 -14.51 -0.15 -3.63 16 17 C 0.04 0.50 12.06 66.83 0.81 1.31 16 18 C -0.26 -4.23 6.04 -20.12 -0.12 -4.36 16 19 C -0.09 -2.25 6.02 -19.91 -0.12 -2.37 16 20 C -0.09 -2.06 5.69 30.01 0.17 -1.89 16 21 C 0.07 1.10 6.76 72.21 0.49 1.59 16 22 O -0.40 -7.05 10.70 -148.98 -1.59 -8.65 16 23 C 0.13 1.57 7.27 71.25 0.52 2.09 16 24 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 26 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.42 9.93 8.24 -92.71 -0.76 9.17 16 31 H 0.26 0.32 8.06 -2.91 -0.02 0.29 16 32 H 0.09 2.11 7.63 -2.39 -0.02 2.09 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -74.25 319.20 0.56 -73.70 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.36 Total: 26.85 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 4.94 Total: 7.91 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -4.23 Total: -122.99 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.81 Total: -33.31 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.25 0.56 -73.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131858161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.735 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds