Wall clock time and date at job start Tue Mar 31 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47416 * 239.99724 * 3 2 1 5 5 H 1.48507 * 109.46823 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47352 * 119.99423 * 3 2 1 7 7 C 1.37885 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46900 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00072 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99656 * 179.97438 * 10 9 7 13 13 C 1.40112 * 119.99684 * 174.46992 * 12 10 9 14 14 C 1.38677 * 120.05486 * 335.19153 * 13 12 10 15 15 C 1.38779 * 119.91564 * 179.79473 * 14 13 12 16 16 N 1.39924 * 119.99460 * 180.20876 * 15 14 13 17 17 C 1.38896 * 120.01473 * 0.47798 * 15 14 13 18 18 C 1.38212 * 120.09856 * 359.75096 * 17 15 14 19 19 C 1.38514 * 120.08838 * 0.02562 * 18 17 15 20 20 O 1.36071 * 120.00744 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00088 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47558 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.47085 * 64.99549 * 22 21 20 24 24 H 0.96996 * 120.00103 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46800 * 59.99554 * 9 7 2 26 26 H 1.08997 * 109.46888 * 300.00049 * 9 7 2 27 27 H 0.96996 * 120.00247 * 354.47614 * 12 10 9 28 28 H 1.08005 * 120.04114 * 359.97438 * 14 13 12 29 29 H 0.96999 * 120.00185 * 180.27304 * 16 15 14 30 30 H 0.97000 * 119.99999 * 0.26741 * 16 15 14 31 31 H 1.07997 * 119.94468 * 179.72617 * 17 15 14 32 32 H 1.08001 * 119.94876 * 179.97438 * 18 17 15 33 33 H 1.09012 * 109.47048 * 299.99976 * 21 20 19 34 34 H 1.09000 * 109.47807 * 59.99644 * 21 20 19 35 35 H 1.08999 * 109.47412 * 184.99660 * 22 21 20 36 36 H 1.08996 * 109.47232 * 304.99926 * 22 21 20 37 37 H 0.96696 * 114.00349 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4229 -3.4229 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 2.6863 -5.9784 -0.1159 14 6 3.9147 -5.7804 -0.7281 15 6 4.8108 -6.8344 -0.8386 16 7 6.0525 -6.6354 -1.4521 17 6 4.4731 -8.0881 -0.3452 18 6 3.2470 -8.2872 0.2608 19 6 2.3513 -7.2371 0.3774 20 8 1.1444 -7.4351 0.9739 21 6 0.8679 -8.7511 1.4574 22 6 -0.5242 -8.7794 2.0915 23 8 -1.5102 -8.5304 1.0875 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.8312 -5.0938 0.0823 28 1 4.1749 -4.8066 -1.1159 29 1 6.6773 -7.3730 -1.5329 30 1 6.2885 -5.7599 -1.7967 31 1 5.1695 -8.9085 -0.4358 32 1 2.9867 -9.2632 0.6432 33 1 0.9043 -9.4579 0.6282 34 1 1.6124 -9.0280 2.2037 35 1 -0.7000 -9.7578 2.5387 36 1 -0.5882 -8.0111 2.8619 37 1 -2.4186 -8.5341 1.4189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143199082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:16 Heat of formation + Delta-G solvation = -96.767800 kcal Electronic energy + Delta-G solvation = -21428.976115 eV Core-core repulsion = 17978.591123 eV Total energy + Delta-G solvation = -3450.384992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32587 -38.73694 -37.67780 -36.59383 -34.54069 -32.95994 -32.93551 -30.29539 -29.90763 -28.41498 -27.20528 -24.10065 -23.53285 -21.78474 -21.38932 -19.59306 -18.24699 -17.75638 -17.28193 -16.86592 -16.20219 -15.71978 -15.49883 -15.13182 -14.97572 -14.51217 -14.39629 -14.22189 -13.72534 -13.41772 -12.84472 -12.76672 -12.58878 -12.21383 -12.08295 -11.59897 -11.40035 -11.24657 -11.01238 -10.80146 -10.65435 -10.26117 -10.13672 -9.95195 -9.47114 -9.29414 -8.63926 -8.42404 -7.76552 -6.88496 -6.04848 -4.04916 1.61866 1.87072 3.29394 3.38238 3.40393 3.45397 3.58220 3.78263 4.00053 4.14568 4.23461 4.49751 4.77196 4.94429 5.02504 5.11956 5.20129 5.33317 5.35086 5.49885 5.63636 5.77962 5.94311 6.19073 6.38148 6.48666 6.62987 6.73972 7.16504 7.21486 7.32219 7.42104 7.56684 7.79913 7.95062 7.97473 8.03758 8.38697 9.04540 9.11461 9.59740 11.07475 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004693 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.452819 B = 5965.494619 C = 7717.494445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.514 3.486 11 O -0.525 6.525 12 N -0.677 5.677 13 C 0.191 3.809 14 C -0.179 4.179 15 C 0.203 3.797 16 N -0.881 5.881 17 C -0.196 4.196 18 C -0.142 4.142 19 C 0.031 3.969 20 O -0.310 6.310 21 C 0.064 3.936 22 C 0.078 3.922 23 O -0.565 6.565 24 H 0.262 0.738 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.413 0.587 28 H 0.154 0.846 29 H 0.393 0.607 30 H 0.398 0.602 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -20.630 1.875 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.306 3.694 11 O -0.400 6.400 12 N -0.321 5.321 13 C 0.093 3.907 14 C -0.204 4.204 15 C 0.099 3.901 16 N -0.421 5.421 17 C -0.220 4.220 18 C -0.162 4.162 19 C -0.016 4.016 20 O -0.225 6.225 21 C -0.012 4.012 22 C 0.000 4.000 23 O -0.370 6.370 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.249 0.751 28 H 0.171 0.829 29 H 0.221 0.779 30 H 0.226 0.774 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.105 -20.061 1.552 20.359 hybrid contribution -0.142 0.426 0.367 0.580 sum 2.963 -19.635 1.919 19.949 Atomic orbital electron populations 1.69949 1.06041 1.27067 1.50852 1.25002 0.94907 0.99466 0.95147 0.86471 0.79364 0.82254 0.78835 1.20128 1.21351 1.20130 1.21098 0.94193 0.88990 1.50556 0.90670 1.19271 0.94058 0.90095 0.99859 1.22279 0.91367 0.82998 0.72780 1.90485 1.17840 1.84251 1.47391 1.44030 1.10182 1.05003 1.72930 1.16994 0.91631 0.85418 0.96653 1.20759 0.93580 1.00316 1.05793 1.17520 0.86463 0.92943 0.93142 1.42369 1.16487 1.14778 1.68478 1.20169 0.98180 0.95777 1.07843 1.20621 0.94476 0.97505 1.03560 1.18405 0.87101 0.93813 1.02327 1.86061 1.32466 1.30607 1.73327 1.22708 0.95288 0.84484 0.98676 1.22198 0.87286 0.99920 0.90631 1.86582 1.18538 1.95245 1.36660 0.92802 0.92976 0.93115 0.75130 0.82858 0.77942 0.77357 0.86558 0.85850 0.91747 0.91083 0.91854 0.92354 0.77308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.81 8.92 -34.44 -0.31 -15.12 16 8 H 0.08 2.25 6.75 -52.48 -0.35 1.90 16 9 C 0.01 0.16 5.46 -29.03 -0.16 0.01 16 10 C 0.51 12.09 7.63 -10.99 -0.08 12.01 16 11 O -0.52 -13.51 12.63 5.54 0.07 -13.44 16 12 N -0.68 -13.37 5.29 -9.76 -0.05 -13.43 16 13 C 0.19 3.56 6.44 -83.52 -0.54 3.03 16 14 C -0.18 -3.29 8.56 -39.22 -0.34 -3.62 16 15 C 0.20 3.05 6.75 -83.72 -0.57 2.49 16 16 N -0.88 -10.25 9.10 32.43 0.30 -9.95 16 17 C -0.20 -2.61 9.89 -39.35 -0.39 -3.00 16 18 C -0.14 -1.92 9.03 -39.49 -0.36 -2.28 16 19 C 0.03 0.51 6.70 -39.09 -0.26 0.24 16 20 O -0.31 -4.70 9.51 -24.82 -0.24 -4.94 16 21 C 0.06 0.69 5.12 37.16 0.19 0.88 16 22 C 0.08 0.69 7.43 37.16 0.28 0.96 16 23 O -0.56 -5.95 13.62 -40.08 -0.55 -6.50 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.41 7.40 8.33 -40.82 -0.34 7.06 16 28 H 0.15 3.14 5.79 -52.48 -0.30 2.84 16 29 H 0.39 3.44 8.84 -40.82 -0.36 3.08 16 30 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.30 6.29 -52.49 -0.33 0.97 16 33 H 0.06 0.66 7.66 -51.92 -0.40 0.26 16 34 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.38 2.15 9.12 45.56 0.42 2.57 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -35.16 319.91 -6.24 -41.40 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.68 Total: 13.53 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.63 Total: -2.91 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.98 Total: -49.13 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.71 Total: -24.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.16 -6.24 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143199082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.370 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds