Wall clock time and date at job start Tue Mar 31 2020 01:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47416 * 239.99724 * 3 2 1 5 5 H 1.48507 * 109.46823 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47352 * 119.99423 * 3 2 1 7 7 C 1.37885 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46900 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00072 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99656 * 179.97438 * 10 9 7 13 13 C 1.40112 * 119.99684 * 174.46992 * 12 10 9 14 14 C 1.38677 * 120.05486 * 335.19153 * 13 12 10 15 15 C 1.38779 * 119.91564 * 179.79473 * 14 13 12 16 16 N 1.39924 * 119.99460 * 180.20876 * 15 14 13 17 17 C 1.38896 * 120.01473 * 0.47798 * 15 14 13 18 18 C 1.38212 * 120.09856 * 359.75096 * 17 15 14 19 19 C 1.38514 * 120.08838 * 0.02562 * 18 17 15 20 20 O 1.36071 * 120.00744 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00088 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47558 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.47085 * 64.99549 * 22 21 20 24 24 H 0.96996 * 120.00103 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46800 * 59.99554 * 9 7 2 26 26 H 1.08997 * 109.46888 * 300.00049 * 9 7 2 27 27 H 0.96996 * 120.00247 * 354.47614 * 12 10 9 28 28 H 1.08005 * 120.04114 * 359.97438 * 14 13 12 29 29 H 0.96999 * 120.00185 * 180.27304 * 16 15 14 30 30 H 0.97000 * 119.99999 * 0.26741 * 16 15 14 31 31 H 1.07997 * 119.94468 * 179.72617 * 17 15 14 32 32 H 1.08001 * 119.94876 * 179.97438 * 18 17 15 33 33 H 1.09012 * 109.47048 * 299.99976 * 21 20 19 34 34 H 1.09000 * 109.47807 * 59.99644 * 21 20 19 35 35 H 1.08999 * 109.47412 * 184.99660 * 22 21 20 36 36 H 1.08996 * 109.47232 * 304.99926 * 22 21 20 37 37 H 0.96696 * 114.00349 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4229 -3.4229 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 2.6863 -5.9784 -0.1159 14 6 3.9147 -5.7804 -0.7281 15 6 4.8108 -6.8344 -0.8386 16 7 6.0525 -6.6354 -1.4521 17 6 4.4731 -8.0881 -0.3452 18 6 3.2470 -8.2872 0.2608 19 6 2.3513 -7.2371 0.3774 20 8 1.1444 -7.4351 0.9739 21 6 0.8679 -8.7511 1.4574 22 6 -0.5242 -8.7794 2.0915 23 8 -1.5102 -8.5304 1.0875 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.8312 -5.0938 0.0823 28 1 4.1749 -4.8066 -1.1159 29 1 6.6773 -7.3730 -1.5329 30 1 6.2885 -5.7599 -1.7967 31 1 5.1695 -8.9085 -0.4358 32 1 2.9867 -9.2632 0.6432 33 1 0.9043 -9.4579 0.6282 34 1 1.6124 -9.0280 2.2037 35 1 -0.7000 -9.7578 2.5387 36 1 -0.5882 -8.0111 2.8619 37 1 -2.4186 -8.5341 1.4189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143199082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:15 Heat of formation + Delta-G solvation = -125.945397 kcal Electronic energy + Delta-G solvation = -21430.241351 eV Core-core repulsion = 17978.591123 eV Total energy + Delta-G solvation = -3451.650228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66202 -40.20277 -38.80187 -37.40810 -36.02378 -35.12649 -34.13735 -31.76058 -30.95236 -30.12726 -28.36626 -25.94445 -24.70267 -23.07035 -22.48740 -21.25442 -19.39730 -18.71895 -18.52043 -18.33374 -17.94724 -17.24377 -16.58386 -16.43945 -16.27113 -16.18842 -15.81033 -15.26301 -14.96584 -14.66515 -14.45652 -14.19179 -13.94614 -13.66471 -13.31528 -13.21437 -12.80804 -12.63263 -12.55091 -12.37473 -12.03114 -11.94034 -11.56436 -11.49550 -10.93942 -10.63621 -10.54204 -10.45392 -9.16391 -8.25802 -8.00934 -6.34067 0.35647 0.67829 1.40277 1.43644 1.52108 1.82117 2.16311 2.37618 2.47528 2.95685 3.09536 3.11853 3.39815 3.90161 4.09885 4.18796 4.23843 4.28224 4.41470 4.49822 4.61371 4.68830 4.81460 4.88152 4.98848 5.11792 5.19994 5.36523 5.40882 5.50886 5.71446 5.83932 6.01274 6.51025 6.59596 6.69828 6.79210 6.94257 7.09926 7.28290 7.39375 8.86491 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004693 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.452819 B = 5965.494619 C = 7717.494445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.518 3.482 11 O -0.554 6.554 12 N -0.664 5.664 13 C 0.150 3.850 14 C -0.205 4.205 15 C 0.199 3.801 16 N -0.869 5.869 17 C -0.181 4.181 18 C -0.132 4.132 19 C 0.028 3.972 20 O -0.333 6.333 21 C 0.050 3.950 22 C 0.075 3.925 23 O -0.594 6.594 24 H 0.268 0.732 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.419 0.581 28 H 0.122 0.878 29 H 0.410 0.590 30 H 0.399 0.601 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -22.945 2.393 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.077 0.923 9 C -0.028 4.028 10 C 0.309 3.691 11 O -0.432 6.432 12 N -0.308 5.308 13 C 0.053 3.947 14 C -0.231 4.231 15 C 0.093 3.907 16 N -0.411 5.411 17 C -0.204 4.204 18 C -0.152 4.152 19 C -0.020 4.020 20 O -0.248 6.248 21 C -0.024 4.024 22 C -0.002 4.002 23 O -0.403 6.403 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.255 0.745 28 H 0.139 0.861 29 H 0.240 0.760 30 H 0.228 0.772 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.928 -22.442 2.067 22.877 hybrid contribution -0.412 0.960 0.210 1.065 sum 3.517 -21.483 2.278 21.888 Atomic orbital electron populations 1.70034 1.07250 1.28263 1.50878 1.25823 0.95858 1.02846 0.94323 0.85457 0.78301 0.78051 0.78947 1.19624 1.19849 1.19706 1.21305 0.93750 0.90871 1.51637 0.92301 1.19085 0.94142 0.90594 0.99010 1.21701 0.90353 0.83905 0.73134 1.90467 1.18550 1.84969 1.49177 1.43619 1.10818 1.04304 1.72065 1.17265 0.91936 0.86070 0.99386 1.20607 0.94789 1.00178 1.07486 1.17635 0.86884 0.92869 0.93279 1.42337 1.15677 1.15596 1.67453 1.20641 0.98547 0.95771 1.05472 1.21076 0.93674 0.98244 1.02185 1.18478 0.88097 0.93301 1.02104 1.86049 1.32005 1.33432 1.73321 1.23145 0.97054 0.82623 0.99609 1.22357 0.86113 1.01772 0.89946 1.86524 1.20176 1.95497 1.38099 0.92308 0.93801 0.93901 0.74452 0.86052 0.75958 0.77248 0.82642 0.82033 0.90974 0.88705 0.88099 0.92855 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.97 45.94 29.54 68.60 2.03 47.96 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.54 -32.40 8.92 25.60 0.23 -32.17 16 8 H 0.06 3.68 6.75 -2.91 -0.02 3.66 16 9 C 0.01 0.60 5.46 29.10 0.16 0.76 16 10 C 0.52 25.78 7.63 87.66 0.67 26.45 16 11 O -0.55 -30.20 12.63 -3.08 -0.04 -30.24 16 12 N -0.66 -27.54 5.29 -303.19 -1.60 -29.14 16 13 C 0.15 5.72 6.44 38.17 0.25 5.96 16 14 C -0.21 -7.74 8.56 22.50 0.19 -7.55 16 15 C 0.20 5.71 6.75 38.14 0.26 5.96 16 16 N -0.87 -18.86 9.10 -51.30 -0.47 -19.33 16 17 C -0.18 -4.19 9.89 22.42 0.22 -3.96 16 18 C -0.13 -3.15 9.03 22.33 0.20 -2.94 16 19 C 0.03 0.88 6.70 22.59 0.15 1.03 16 20 O -0.33 -9.75 9.51 -89.71 -0.85 -10.60 16 21 C 0.05 0.94 5.12 71.98 0.37 1.31 16 22 C 0.08 1.16 7.43 71.98 0.53 1.70 16 23 O -0.59 -11.73 13.62 -144.34 -1.97 -13.70 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.04 2.41 8.14 -2.39 -0.02 2.40 16 26 H 0.04 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.42 15.81 8.33 -92.71 -0.77 15.04 16 28 H 0.12 5.32 5.79 -2.91 -0.02 5.30 16 29 H 0.41 6.02 8.84 -92.71 -0.82 5.20 16 30 H 0.40 8.77 8.84 -92.71 -0.82 7.95 16 31 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.16 2.56 6.29 -2.91 -0.02 2.55 16 33 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 34 H 0.10 1.30 7.66 -2.39 -0.02 1.28 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.40 4.04 9.12 -74.06 -0.68 3.37 16 Total: -1.00 -78.40 319.91 -0.85 -79.26 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -1.93 Total: 33.11 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 3.69 Total: -2.39 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -1.78 Total: -103.41 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.86 Total: -54.54 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.40 -0.85 -79.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143199082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.688 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds