Wall clock time and date at job start Tue Mar 31 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99573 * 2 1 4 4 O 1.20824 * 120.00473 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99448 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47076 * 299.99891 * 5 3 2 7 7 C 1.53000 * 109.46932 * 60.00154 * 5 3 2 8 8 O 1.42897 * 109.47207 * 54.99761 * 7 5 3 9 9 N 1.46499 * 109.46852 * 180.02562 * 5 3 2 10 10 C 1.38083 * 120.00291 * 154.99940 * 9 5 3 11 11 N 1.32274 * 119.90035 * 359.72366 * 10 9 5 12 12 C 1.31971 * 121.86265 * 179.74697 * 11 10 9 13 13 C 1.50707 * 119.27500 * 180.27064 * 12 11 10 14 14 C 1.38675 * 121.45014 * 0.54096 * 12 11 10 15 15 C 1.38009 * 119.62787 * 359.72787 * 14 12 11 16 16 C 1.41004 * 118.27751 * 0.02562 * 15 14 12 17 17 C 1.41013 * 120.70404 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00234 * 154.86993 * 17 16 15 19 19 C 1.39957 * 120.00128 * 334.87558 * 17 16 15 20 20 N 1.30862 * 119.99804 * 343.92395 * 19 17 16 21 21 Si 1.86797 * 119.99963 * 163.92738 * 19 17 16 22 22 H 1.48504 * 109.47297 * 59.99725 * 21 19 17 23 23 H 1.48503 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47087 * 299.99859 * 21 19 17 25 25 H 1.09001 * 109.47255 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47269 * 300.00158 * 1 2 3 27 27 H 1.08998 * 109.47153 * 59.99954 * 1 2 3 28 28 H 1.09002 * 109.46540 * 175.00032 * 7 5 3 29 29 H 1.08995 * 109.47041 * 294.99716 * 7 5 3 30 30 H 0.96697 * 114.00000 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00077 * 334.99598 * 9 5 3 32 32 H 1.08996 * 109.47114 * 270.26030 * 13 12 11 33 33 H 1.08999 * 109.47033 * 30.25996 * 13 12 11 34 34 H 1.09001 * 109.46735 * 150.25925 * 13 12 11 35 35 H 1.08004 * 120.18697 * 179.71982 * 14 12 11 36 36 H 1.08000 * 120.86132 * 179.97438 * 15 14 12 37 37 H 0.96996 * 119.99938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8891 7 6 4.1128 0.5816 -1.2502 8 8 3.5118 1.1536 -2.4136 9 7 3.9817 2.6798 0.0002 10 6 5.2169 3.0343 0.5052 11 7 6.0215 2.1046 0.9930 12 6 7.2118 2.3993 1.4806 13 6 8.0835 1.2926 2.0161 14 6 7.6760 3.7056 1.5163 15 6 6.8838 4.7247 1.0278 16 6 5.6166 4.3938 0.5053 17 6 4.7652 5.3946 -0.0066 18 1 4.0186 5.1426 -0.7452 19 6 4.8878 6.7146 0.4423 20 7 5.5528 6.9735 1.5392 21 14 4.1020 8.1066 -0.5243 22 1 2.6351 7.8888 -0.6020 23 1 4.3749 9.3977 0.1568 24 1 4.6709 8.1397 -1.8956 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 5.1936 0.7153 -1.2965 29 1 3.8799 -0.4823 -1.2067 30 1 3.8127 0.7617 -3.2448 31 1 3.3890 3.3610 -0.3542 32 1 7.8772 1.1485 3.0766 33 1 7.8718 0.3698 1.4761 34 1 9.1320 1.5593 1.8829 35 1 8.6519 3.9242 1.9241 36 1 7.2252 5.7491 1.0461 37 1 5.6375 7.8882 1.8505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155930490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:14 Heat of formation + Delta-G solvation = -123.087042 kcal Electronic energy + Delta-G solvation = -22238.095343 eV Core-core repulsion = 18786.569063 eV Total energy + Delta-G solvation = -3451.526280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72461 -40.41741 -38.26834 -37.54032 -36.11355 -35.86261 -32.86621 -32.10548 -30.21007 -29.21655 -28.26236 -25.84510 -24.90485 -23.02173 -22.55826 -21.38013 -19.32095 -19.03632 -18.29503 -18.25905 -17.41392 -17.26032 -17.06069 -16.29309 -15.65018 -15.55273 -15.36984 -14.76357 -14.67560 -14.43158 -14.18881 -13.78906 -13.67043 -13.45127 -13.22022 -13.14646 -12.95593 -12.84889 -12.62716 -12.52413 -12.17290 -11.84509 -11.69983 -11.61376 -11.10654 -10.97168 -10.70119 -9.97630 -9.79969 -8.67505 -8.36077 -6.14795 0.90339 1.08034 1.18124 1.36465 1.46451 1.51076 1.53711 2.21023 2.63378 2.79652 3.31590 3.68513 3.75422 4.06822 4.10803 4.30662 4.31644 4.40566 4.51769 4.56340 4.65608 4.74932 4.76639 4.92233 5.06574 5.09287 5.18566 5.23249 5.26603 5.44634 5.76690 5.88919 6.14239 6.36294 6.58415 6.72446 6.75507 6.87245 6.88932 7.09221 7.85276 8.36784 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.006870 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.740603 B = 4074.966835 C = 5599.627629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.471 3.529 4 O -0.533 6.533 5 C 0.176 3.824 6 H 0.130 0.870 7 C 0.082 3.918 8 O -0.589 6.589 9 N -0.709 5.709 10 C 0.301 3.699 11 N -0.531 5.531 12 C 0.027 3.973 13 C -0.068 4.068 14 C -0.196 4.196 15 C -0.140 4.140 16 C -0.003 4.003 17 C -0.482 4.482 18 H 0.069 0.931 19 C 0.036 3.964 20 N -0.830 5.830 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.261 1.261 25 H 0.142 0.858 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.398 0.602 31 H 0.405 0.595 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -12.659 -3.748 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.314 3.686 4 O -0.422 6.422 5 C 0.068 3.932 6 H 0.148 0.852 7 C 0.003 3.997 8 O -0.397 6.397 9 N -0.349 5.349 10 C 0.064 3.936 11 N -0.249 5.249 12 C -0.108 4.108 13 C -0.126 4.126 14 C -0.218 4.218 15 C -0.167 4.167 16 C -0.009 4.009 17 C -0.514 4.514 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.457 5.457 21 Si 0.797 3.203 22 H -0.192 1.192 23 H -0.191 1.191 24 H -0.185 1.185 25 H 0.160 0.840 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.931 -12.870 -3.087 13.806 hybrid contribution -0.267 2.004 -0.676 2.131 sum -4.198 -10.866 -3.762 12.241 Atomic orbital electron populations 1.23590 0.74563 1.06009 1.02311 1.86457 1.25128 1.31518 1.83701 1.23890 0.92081 0.81704 0.70950 1.90639 1.67383 1.37687 1.46492 1.20366 0.85870 0.85908 1.01105 0.85232 1.22498 0.96885 0.96605 0.83714 1.86477 1.69806 1.66038 1.17399 1.43504 1.16021 1.05868 1.69505 1.18459 0.87237 0.89573 0.98348 1.66462 1.05848 1.36047 1.16586 1.20834 0.92508 0.94038 1.03405 1.20358 0.97106 0.95073 1.00049 1.21510 1.00951 0.93691 1.05613 1.21384 0.93269 0.98720 1.03278 1.18186 0.94074 0.91334 0.97343 1.19309 1.16839 0.93261 1.21949 0.91279 1.26570 0.94772 1.01966 0.94488 1.69847 1.34731 1.22773 1.18366 0.85356 0.79095 0.76642 0.79250 1.19173 1.19073 1.18493 0.84047 0.92335 0.92257 0.92540 0.89056 0.75219 0.75710 0.91752 0.91379 0.90529 0.86215 0.87203 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.35 -9.71 10.49 -51.44 -0.54 -10.25 16 3 C 0.47 16.62 6.84 71.24 0.49 17.11 16 4 O -0.53 -22.48 15.59 21.97 0.34 -22.13 16 5 C 0.18 6.30 2.89 44.25 0.13 6.42 16 6 H 0.13 4.54 7.53 -2.39 -0.02 4.52 16 7 C 0.08 2.39 6.80 71.98 0.49 2.88 16 8 O -0.59 -17.41 13.09 -148.98 -1.95 -19.35 16 9 N -0.71 -31.99 4.95 -326.70 -1.62 -33.61 16 10 C 0.30 15.01 7.49 134.05 1.00 16.02 16 11 N -0.53 -24.22 9.07 -179.57 -1.63 -25.85 16 12 C 0.03 1.17 6.79 42.64 0.29 1.46 16 13 C -0.07 -2.14 10.15 71.24 0.72 -1.42 16 14 C -0.20 -9.03 9.69 22.32 0.22 -8.81 16 15 C -0.14 -7.45 8.79 22.89 0.20 -7.25 16 16 C 0.00 -0.14 5.60 -21.07 -0.12 -0.26 16 17 C -0.48 -26.63 8.52 23.37 0.20 -26.43 16 18 H 0.07 3.76 6.69 -2.91 -0.02 3.75 16 19 C 0.04 1.87 5.19 85.25 0.44 2.31 16 20 N -0.83 -44.53 10.93 21.83 0.24 -44.29 16 21 Si 0.98 40.33 29.59 68.60 2.03 42.36 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.40 7.41 9.12 -74.06 -0.68 6.74 16 31 H 0.41 19.82 6.00 -92.71 -0.56 19.26 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.11 6.10 6.25 -2.91 -0.02 6.08 16 37 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -69.10 321.32 2.02 -67.08 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -0.11 Total: 42.23 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.26 Total: 3.81 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.01 Total: -103.74 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -2.15 Total: -51.74 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -69.10 2.02 -67.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155930490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.010 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds