Wall clock time and date at job start Tue Mar 31 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47417 * 270.00384 * 3 2 1 5 5 H 1.48500 * 109.46996 * 30.00394 * 3 2 1 6 6 H 1.48496 * 109.46804 * 150.00096 * 3 2 1 7 7 C 1.37870 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47260 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47167 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.39240 * 120.00212 * 180.02562 * 12 11 10 14 14 C 1.39111 * 119.62692 * 359.97438 * 13 12 11 15 15 C 1.38261 * 119.17094 * 179.97438 * 14 13 12 16 16 C 1.39409 * 118.44494 * 0.02562 * 15 14 13 17 17 N 1.40181 * 120.40551 * 179.97438 * 16 15 14 18 18 C 1.34782 * 120.00265 * 138.57795 * 17 16 15 19 19 N 1.34773 * 119.99912 * 174.18976 * 18 17 16 20 20 S 1.71202 * 119.99788 * 354.46742 * 18 17 16 21 21 C 1.38625 * 119.19058 * 0.24639 * 16 15 14 22 22 N 1.31969 * 120.75477 * 359.48056 * 21 16 15 23 23 H 0.97002 * 119.99602 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46992 * 60.00110 * 9 7 2 25 25 H 1.08997 * 109.47135 * 300.00756 * 9 7 2 26 26 H 1.08999 * 109.47457 * 59.99707 * 10 9 7 27 27 H 1.09006 * 109.47289 * 299.99995 * 10 9 7 28 28 H 1.09000 * 109.47259 * 60.00425 * 11 10 9 29 29 H 1.08997 * 109.47457 * 299.99980 * 11 10 9 30 30 H 0.96998 * 120.00181 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.41303 * 0.02562 * 14 13 12 32 32 H 1.08003 * 120.77936 * 180.02562 * 15 14 13 33 33 H 0.96997 * 119.99702 * 318.57336 * 17 16 15 34 34 H 0.97001 * 120.00096 * 180.27202 * 19 18 17 35 35 H 0.97002 * 120.00000 * 0.27690 * 19 18 17 36 36 H 1.08005 * 119.61738 * 179.72740 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 7 2.4322 -6.1006 -0.0006 13 6 1.9681 -7.4134 -0.0015 14 6 0.5988 -7.6587 -0.0025 15 6 0.1483 -8.9659 -0.0040 16 6 1.0909 -9.9930 -0.0039 17 7 0.6797 -11.3332 -0.0049 18 6 1.3194 -12.2338 -0.7771 19 7 1.0024 -13.5409 -0.6913 20 16 2.5394 -11.7182 -1.8619 21 6 2.4396 -9.6730 0.0029 22 7 2.8344 -8.4137 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8539 -5.0446 -0.8914 29 1 0.8532 -5.0451 0.8885 30 1 3.3858 -5.9234 -0.0002 31 1 -0.1037 -6.8383 -0.0030 32 1 -0.9090 -9.1861 -0.0052 33 1 -0.0650 -11.6124 0.5503 34 1 1.4655 -14.1896 -1.2442 35 1 0.3112 -13.8331 -0.0767 36 1 3.1758 -10.4633 0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:00 Heat of formation + Delta-G solvation = 48.438258 kcal Electronic energy + Delta-G solvation = -18194.860238 eV Core-core repulsion = 15225.817475 eV Total energy + Delta-G solvation = -2969.042763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64207 -38.82993 -36.38721 -34.74591 -33.37919 -32.09751 -31.36480 -28.58058 -26.37781 -25.03741 -23.50811 -23.19964 -21.84273 -20.40157 -19.26081 -18.85990 -17.41460 -16.76687 -16.52484 -16.14659 -15.79227 -15.03465 -14.71510 -14.48556 -14.23456 -13.96347 -13.69929 -13.22245 -12.70416 -12.25514 -12.08062 -11.81927 -11.40507 -11.13801 -10.89792 -10.74573 -10.59103 -9.98769 -9.77015 -9.59283 -9.52325 -9.37628 -9.15939 -8.39492 -8.14010 -7.78963 -7.20532 -6.04749 -4.07288 0.71281 1.38582 1.48016 1.69077 2.36104 3.23727 3.30417 3.36528 3.38162 3.41993 3.96732 4.43214 4.69511 4.82732 4.99228 5.11563 5.31593 5.44313 5.55902 5.66245 5.73020 5.86771 5.95822 6.03727 6.17620 6.34967 6.54166 6.59121 6.74712 6.82747 6.94042 7.19144 7.59212 7.71227 7.76912 7.93884 8.30220 8.36229 8.99147 9.57261 11.06577 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.055605 B = 0.002437 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.430149 B =11485.623651 C =11765.889893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.122 3.878 12 N -0.714 5.714 13 C 0.415 3.585 14 C -0.236 4.236 15 C -0.031 4.031 16 C -0.018 4.018 17 N -0.610 5.610 18 C 0.563 3.437 19 N -0.803 5.803 20 S -0.622 6.622 21 C 0.208 3.792 22 N -0.538 5.538 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.405 0.595 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.404 0.596 34 H 0.434 0.566 35 H 0.396 0.604 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -27.073 3.114 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.002 4.002 12 N -0.343 5.343 13 C 0.177 3.823 14 C -0.262 4.262 15 C -0.059 4.059 16 C -0.115 4.115 17 N -0.235 5.235 18 C 0.203 3.797 19 N -0.349 5.349 20 S -0.495 6.495 21 C 0.044 3.956 22 N -0.256 5.256 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.241 0.759 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.242 0.758 34 H 0.269 0.731 35 H 0.227 0.773 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.639 -26.116 2.427 26.280 hybrid contribution -1.391 -0.060 0.720 1.567 sum -3.029 -26.176 3.147 26.538 Atomic orbital electron populations 1.69961 1.06053 1.26704 1.50714 1.25022 0.94877 0.99336 0.95231 0.86572 0.79831 0.83332 0.78152 1.20619 1.21216 1.19854 1.21207 0.93085 0.90905 1.50802 0.92586 1.19029 0.93808 0.90904 0.97537 1.21875 0.99852 0.92893 1.01301 1.21749 0.91997 0.85353 1.01076 1.45017 1.10165 1.01289 1.77835 1.18652 0.88984 0.86197 0.88426 1.21244 0.94988 0.97111 1.12901 1.20977 0.98729 0.91285 0.94885 1.18029 0.94960 0.81062 1.17457 1.42017 1.33367 1.06856 1.41301 1.22443 0.88644 0.83235 0.85417 1.42900 1.41861 1.05218 1.44888 1.93866 1.30661 1.84557 1.40435 1.22681 0.92841 0.92616 0.87430 1.67376 1.37431 0.98912 1.21846 0.92943 0.96277 0.96309 0.92518 0.92483 0.91989 0.92029 0.75912 0.84321 0.85075 0.75846 0.73078 0.77319 0.81479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 1.94 4.89 -4.04 -0.02 1.92 16 12 N -0.71 -10.77 5.74 -60.38 -0.35 -11.11 16 13 C 0.41 6.20 7.65 -154.85 -1.18 5.02 16 14 C -0.24 -3.03 9.32 -39.25 -0.37 -3.40 16 15 C -0.03 -0.32 10.10 -39.14 -0.40 -0.72 16 16 C -0.02 -0.19 5.94 -83.46 -0.50 -0.69 16 17 N -0.61 -4.23 5.36 -11.26 -0.06 -4.29 16 18 C 0.56 4.54 7.91 -86.92 -0.69 3.85 16 19 N -0.80 -2.50 8.87 29.96 0.27 -2.23 16 20 S -0.62 -8.79 26.62 -107.50 -2.86 -11.65 16 21 C 0.21 2.81 9.04 -17.35 -0.16 2.66 16 22 N -0.54 -8.30 10.38 -12.25 -0.13 -8.43 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.99 7.93 -51.93 -0.41 0.57 16 29 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 30 H 0.41 5.95 8.60 -40.82 -0.35 5.60 16 31 H 0.14 1.67 6.70 -52.49 -0.35 1.31 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.40 1.21 8.84 -40.82 -0.36 0.85 16 34 H 0.43 1.14 8.81 -40.82 -0.36 0.78 16 35 H 0.40 -0.18 8.85 -40.82 -0.36 -0.54 16 36 H 0.17 2.28 6.25 -49.77 -0.31 1.96 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -35.16 321.36 -11.14 -46.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.57 Total: 2.41 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -4.00 Total: -6.59 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.47 Total: -51.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -2.86 Total: -11.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.16 -11.14 -46.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.738 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds