Wall clock time and date at job start Tue Mar 31 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47417 * 270.00384 * 3 2 1 5 5 H 1.48500 * 109.46996 * 30.00394 * 3 2 1 6 6 H 1.48496 * 109.46804 * 150.00096 * 3 2 1 7 7 C 1.37870 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47260 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47167 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.39240 * 120.00212 * 180.02562 * 12 11 10 14 14 C 1.39111 * 119.62692 * 359.97438 * 13 12 11 15 15 C 1.38261 * 119.17094 * 179.97438 * 14 13 12 16 16 C 1.39409 * 118.44494 * 0.02562 * 15 14 13 17 17 N 1.40181 * 120.40551 * 179.97438 * 16 15 14 18 18 C 1.34782 * 120.00265 * 138.57795 * 17 16 15 19 19 N 1.34773 * 119.99912 * 174.18976 * 18 17 16 20 20 S 1.71202 * 119.99788 * 354.46742 * 18 17 16 21 21 C 1.38625 * 119.19058 * 0.24639 * 16 15 14 22 22 N 1.31969 * 120.75477 * 359.48056 * 21 16 15 23 23 H 0.97002 * 119.99602 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46992 * 60.00110 * 9 7 2 25 25 H 1.08997 * 109.47135 * 300.00756 * 9 7 2 26 26 H 1.08999 * 109.47457 * 59.99707 * 10 9 7 27 27 H 1.09006 * 109.47289 * 299.99995 * 10 9 7 28 28 H 1.09000 * 109.47259 * 60.00425 * 11 10 9 29 29 H 1.08997 * 109.47457 * 299.99980 * 11 10 9 30 30 H 0.96998 * 120.00181 * 359.97438 * 12 11 10 31 31 H 1.08001 * 120.41303 * 0.02562 * 14 13 12 32 32 H 1.08003 * 120.77936 * 180.02562 * 15 14 13 33 33 H 0.96997 * 119.99702 * 318.57336 * 17 16 15 34 34 H 0.97001 * 120.00096 * 180.27202 * 19 18 17 35 35 H 0.97002 * 120.00000 * 0.27690 * 19 18 17 36 36 H 1.08005 * 119.61738 * 179.72740 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 -0.0012 12 7 2.4322 -6.1006 -0.0006 13 6 1.9681 -7.4134 -0.0015 14 6 0.5988 -7.6587 -0.0025 15 6 0.1483 -8.9659 -0.0040 16 6 1.0909 -9.9930 -0.0039 17 7 0.6797 -11.3332 -0.0049 18 6 1.3194 -12.2338 -0.7771 19 7 1.0024 -13.5409 -0.6913 20 16 2.5394 -11.7182 -1.8619 21 6 2.4396 -9.6730 0.0029 22 7 2.8344 -8.4137 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8539 -5.0446 -0.8914 29 1 0.8532 -5.0451 0.8885 30 1 3.3858 -5.9234 -0.0002 31 1 -0.1037 -6.8383 -0.0030 32 1 -0.9090 -9.1861 -0.0052 33 1 -0.0650 -11.6124 0.5503 34 1 1.4655 -14.1896 -1.2442 35 1 0.3112 -13.8331 -0.0767 36 1 3.1758 -10.4633 0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157642258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:59 Heat of formation + Delta-G solvation = 22.996930 kcal Electronic energy + Delta-G solvation = -18195.963457 eV Core-core repulsion = 15225.817475 eV Total energy + Delta-G solvation = -2970.145982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56717 -39.64447 -37.57379 -35.81022 -35.00081 -33.13245 -32.93836 -29.81704 -27.92820 -25.99862 -24.84591 -24.28396 -22.99687 -22.00779 -19.98556 -19.54157 -18.53126 -18.45001 -17.56428 -17.17898 -16.57007 -16.49745 -16.38364 -15.65538 -15.28925 -15.11141 -14.75409 -14.27563 -14.09461 -13.66827 -13.64092 -13.55072 -12.79334 -12.50693 -12.34498 -12.30105 -11.99470 -11.59864 -11.46601 -11.18939 -10.72902 -10.65104 -10.53723 -10.30574 -9.12933 -8.87908 -8.24099 -8.19561 -6.29474 -0.08832 0.43454 0.63339 0.85558 1.41772 1.42230 1.53249 1.60594 2.23268 2.43207 2.82508 2.96752 3.14367 3.76359 3.95646 4.05088 4.10828 4.25431 4.27353 4.58077 4.59464 4.87808 4.98272 5.00755 5.03982 5.17626 5.23270 5.42593 5.51547 5.60624 5.74222 5.85773 6.05139 6.13243 6.26210 6.38204 6.64441 6.87074 7.25911 7.39505 8.92079 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.055605 B = 0.002437 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.430149 B =11485.623651 C =11765.889893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.106 4.106 11 C 0.140 3.860 12 N -0.720 5.720 13 C 0.392 3.608 14 C -0.244 4.244 15 C -0.020 4.020 16 C -0.003 4.003 17 N -0.591 5.591 18 C 0.595 3.405 19 N -0.763 5.763 20 S -0.744 6.744 21 C 0.191 3.809 22 N -0.565 5.565 23 H 0.264 0.736 24 H -0.002 1.002 25 H 0.001 0.999 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.404 0.596 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.431 0.569 34 H 0.441 0.559 35 H 0.423 0.577 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -28.785 4.024 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.144 4.144 11 C 0.016 3.984 12 N -0.351 5.351 13 C 0.156 3.844 14 C -0.271 4.271 15 C -0.047 4.047 16 C -0.102 4.102 17 N -0.218 5.218 18 C 0.229 3.771 19 N -0.309 5.309 20 S -0.618 6.618 21 C 0.028 3.972 22 N -0.284 5.284 23 H 0.072 0.928 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.239 0.761 31 H 0.164 0.836 32 H 0.191 0.809 33 H 0.274 0.726 34 H 0.278 0.722 35 H 0.258 0.742 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.055 -27.933 3.374 28.301 hybrid contribution -1.075 0.256 0.504 1.215 sum -4.131 -27.677 3.878 28.251 Atomic orbital electron populations 1.70079 1.07597 1.27743 1.51660 1.25924 0.95786 1.03180 0.94844 0.85493 0.78694 0.78740 0.78404 1.19958 1.20719 1.18926 1.21681 0.93552 0.92429 1.50482 0.92325 1.18914 0.94252 0.92259 0.95576 1.21590 0.98692 0.92766 1.01377 1.21395 0.91524 0.84122 1.01385 1.44805 1.09778 1.01344 1.79136 1.18824 0.89939 0.85772 0.89872 1.21452 0.94137 0.98614 1.12851 1.21346 1.00587 0.89943 0.92835 1.17980 0.94041 0.82851 1.15292 1.41694 1.33676 1.05299 1.41118 1.21617 0.86845 0.84629 0.84053 1.42712 1.41047 1.03205 1.43889 1.94201 1.36069 1.86108 1.45465 1.22708 0.94247 0.91893 0.88385 1.67240 1.38621 0.99803 1.22695 0.92757 0.98335 0.98087 0.92231 0.92566 0.91997 0.91447 0.76095 0.83608 0.80948 0.72634 0.72200 0.74168 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.11 -4.12 5.27 30.59 0.16 -3.96 16 11 C 0.14 4.46 4.89 86.38 0.42 4.88 16 12 N -0.72 -21.93 5.74 -344.93 -1.98 -23.91 16 13 C 0.39 11.70 7.65 133.00 1.02 12.72 16 14 C -0.24 -5.92 9.32 22.48 0.21 -5.71 16 15 C -0.02 -0.35 10.10 22.56 0.23 -0.12 16 16 C 0.00 -0.06 5.94 38.18 0.23 0.16 16 17 N -0.59 -6.07 5.36 -189.55 -1.02 -7.08 16 18 C 0.60 8.05 7.91 179.05 1.42 9.47 16 19 N -0.76 -1.82 8.87 -59.11 -0.52 -2.34 16 20 S -0.74 -21.28 26.62 -56.49 -1.50 -22.79 16 21 C 0.19 5.13 9.04 84.76 0.77 5.90 16 22 N -0.56 -17.78 10.38 -192.66 -2.00 -19.78 16 23 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 1.97 7.93 -2.39 -0.02 1.95 16 29 H 0.07 2.06 7.93 -2.39 -0.02 2.05 16 30 H 0.40 12.17 8.60 -92.71 -0.80 11.37 16 31 H 0.15 3.27 6.70 -2.91 -0.02 3.25 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.43 0.31 8.84 -92.71 -0.82 -0.51 16 34 H 0.44 0.88 8.81 -92.71 -0.82 0.07 16 35 H 0.42 -2.60 8.85 -92.71 -0.82 -3.42 16 36 H 0.16 4.49 6.25 -4.63 -0.03 4.46 16 Total: -1.00 -80.41 321.36 -1.54 -81.95 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.11 Total: 8.03 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.29 Total: -4.77 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -5.23 Total: -108.42 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -21.28 SS G_CDS: -1.50 Total: -22.79 kcal Total: -80.41 -1.54 -81.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.945 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds