Wall clock time and date at job start Tue Mar 31 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48494 * 109.47557 * 269.99991 * 3 2 1 5 5 H 1.48500 * 109.47336 * 30.00548 * 3 2 1 6 6 H 1.48505 * 109.47075 * 150.00297 * 3 2 1 7 7 C 1.38626 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 359.97438 * 7 2 1 9 9 O 1.34812 * 120.00404 * 180.27316 * 7 2 1 10 10 C 1.35812 * 117.00148 * 174.66657 * 9 7 2 11 11 C 1.39453 * 120.40321 * 5.47935 * 10 9 7 12 12 C 1.38214 * 118.44624 * 179.97438 * 11 10 9 13 13 C 1.39165 * 119.17016 * 359.97438 * 12 11 10 14 14 N 1.39127 * 119.62841 * 180.02562 * 13 12 11 15 15 C 1.46491 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.52998 * 109.47374 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.52297 * 59.87017 * 16 15 14 18 18 C 1.53144 * 109.52505 * 179.97438 * 16 15 14 19 19 O 1.43080 * 109.14999 * 175.21809 * 18 16 15 20 20 C 1.43082 * 113.59042 * 302.04653 * 19 18 16 21 21 C 1.53140 * 109.14697 * 57.95386 * 20 19 18 22 22 O 1.43073 * 109.15612 * 304.68379 * 21 20 19 23 23 N 1.32388 * 120.74309 * 359.97438 * 13 12 11 24 24 C 1.31936 * 121.68610 * 359.76927 * 23 13 12 25 25 H 0.97000 * 119.99522 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.77407 * 359.94931 * 11 10 9 27 27 H 1.07996 * 120.40913 * 179.97438 * 12 11 10 28 28 H 0.97004 * 119.99872 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.47238 * 300.00165 * 15 14 13 30 30 H 1.09009 * 109.47224 * 59.99643 * 15 14 13 31 31 H 1.09000 * 109.52963 * 295.11997 * 18 16 15 32 32 H 1.08995 * 109.52643 * 55.31824 * 18 16 15 33 33 H 1.08996 * 109.52174 * 177.85462 * 20 19 18 34 34 H 1.09001 * 109.52435 * 298.05174 * 20 19 18 35 35 H 1.09000 * 109.52427 * 64.59304 * 21 20 19 36 36 H 1.08999 * 109.51978 * 184.78091 * 21 20 19 37 37 H 1.08001 * 119.61747 * 180.26940 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0050 10 6 3.9732 -2.4057 0.1166 11 6 3.2269 -3.5836 0.1048 12 6 3.8954 -4.7878 0.2206 13 6 5.2816 -4.7849 0.3436 14 7 5.9643 -5.9915 0.4602 15 6 5.2241 -7.2557 0.4524 16 6 6.2046 -8.4217 0.5930 17 1 6.7527 -8.3258 1.5302 18 6 5.4319 -9.7439 0.5856 19 8 6.3618 -10.8311 0.6048 20 6 7.2806 -10.8183 -0.4919 21 6 8.0532 -9.4961 -0.4845 22 8 7.1234 -8.4089 -0.5037 23 7 5.9581 -3.6469 0.3500 24 6 5.3527 -2.4802 0.2366 25 1 -0.4849 0.8401 0.0004 26 1 2.1516 -3.5556 0.0080 27 1 3.3488 -5.7192 0.2155 28 1 6.9305 -5.9958 0.5466 29 1 4.5204 -7.2698 1.2846 30 1 4.6784 -7.3514 -0.4864 31 1 4.7915 -9.7967 1.4661 32 1 4.8204 -9.8035 -0.3147 33 1 7.9791 -11.6490 -0.3917 34 1 6.7312 -10.9139 -1.4285 35 1 8.6647 -9.4366 0.4159 36 1 8.6935 -9.4434 -1.3650 37 1 5.9379 -1.5725 0.2415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168264979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:06 Heat of formation + Delta-G solvation = -67.669054 kcal Electronic energy + Delta-G solvation = -21093.097069 eV Core-core repulsion = 17643.973893 eV Total energy + Delta-G solvation = -3449.123176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35761 -39.64575 -37.55230 -36.51244 -35.17038 -32.44553 -32.01858 -31.34577 -29.22632 -28.04418 -25.89545 -24.85960 -23.76152 -22.65281 -21.37911 -21.13739 -18.21572 -17.50751 -17.26178 -16.97856 -16.58199 -16.25001 -16.02320 -15.48147 -15.15958 -14.47509 -14.31823 -14.00356 -13.85586 -13.60053 -13.52152 -12.87100 -12.69110 -12.42191 -12.28425 -12.23622 -12.06896 -11.76225 -11.53833 -11.05955 -10.90914 -10.72032 -10.26754 -9.62718 -9.54349 -9.39501 -9.03146 -8.83589 -8.63804 -6.77366 -6.39217 -4.04041 1.95017 2.31618 3.19026 3.25265 3.27833 3.28367 3.42794 3.51599 4.25511 4.26236 4.49798 4.57242 4.60725 4.64910 4.71850 4.86890 4.90592 5.08402 5.12678 5.17382 5.26611 5.31233 5.37421 5.51316 5.62141 5.68957 5.85360 5.87382 6.41905 6.54763 6.67218 6.69142 7.01236 7.05447 7.55883 7.70196 7.98641 8.09459 8.81624 8.96394 9.58311 10.68829 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048899 B = 0.002919 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.465872 B = 9591.643766 C =10023.309964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.387 4.387 8 H 0.103 0.897 9 O -0.218 6.218 10 C 0.068 3.932 11 C -0.140 4.140 12 C -0.188 4.188 13 C 0.319 3.681 14 N -0.733 5.733 15 C 0.148 3.852 16 C 0.045 3.955 17 H 0.075 0.925 18 C 0.033 3.967 19 O -0.378 6.378 20 C 0.022 3.978 21 C 0.024 3.976 22 O -0.368 6.368 23 N -0.503 5.503 24 C 0.071 3.929 25 H 0.279 0.721 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.400 0.600 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -19.368 0.439 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.120 0.880 9 O -0.123 6.123 10 C 0.014 3.986 11 C -0.167 4.167 12 C -0.212 4.212 13 C 0.087 3.913 14 N -0.372 5.372 15 C 0.022 3.978 16 C -0.013 4.013 17 H 0.093 0.907 18 C -0.045 4.045 19 O -0.297 6.297 20 C -0.055 4.055 21 C -0.053 4.053 22 O -0.287 6.287 23 N -0.220 5.220 24 C -0.088 4.088 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.235 0.765 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.883 -19.128 0.492 23.067 hybrid contribution -0.473 0.585 -0.129 0.763 sum 12.410 -18.542 0.364 22.315 Atomic orbital electron populations 1.69658 1.05558 1.28419 1.48544 1.24440 0.95014 0.98828 0.95798 0.86166 0.80343 0.81390 0.78931 1.19930 1.20930 1.18245 1.20691 0.77021 0.96458 1.52181 0.88009 1.83581 1.22348 1.24667 1.81669 1.19978 0.92994 0.86351 0.99323 1.21521 1.01380 0.91241 1.02578 1.21128 0.92860 0.98387 1.08828 1.17936 0.88258 0.85773 0.99336 1.43732 1.08536 1.00858 1.84118 1.21096 0.93112 0.81531 1.02016 1.23005 0.91858 0.95405 0.91063 0.90661 1.23189 0.91561 0.85724 1.04007 1.88108 1.46766 1.47261 1.47543 1.23285 0.93041 0.98614 0.90551 1.23252 0.91923 0.86680 1.03438 1.88197 1.46267 1.47235 1.46966 1.66936 1.39580 0.97064 1.18400 1.21451 0.89579 0.94409 1.03359 0.91128 0.84019 0.86368 0.76488 0.90824 0.91672 0.87259 0.91550 0.87769 0.91965 0.92093 0.87649 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.96 55.48 0.77 -24.68 16 2 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 21.62 28.62 -169.99 -4.86 16.76 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.39 -10.82 9.96 30.88 0.31 -10.51 16 8 H 0.10 2.88 5.49 -52.48 -0.29 2.59 16 9 O -0.22 -5.68 8.59 -0.09 0.00 -5.69 16 10 C 0.07 1.56 6.67 -38.97 -0.26 1.30 16 11 C -0.14 -2.98 9.26 -39.14 -0.36 -3.34 16 12 C -0.19 -3.41 9.32 -39.25 -0.37 -3.77 16 13 C 0.32 5.79 7.65 -154.90 -1.19 4.60 16 14 N -0.73 -10.51 5.63 -60.38 -0.34 -10.85 16 15 C 0.15 1.61 4.59 -4.05 -0.02 1.59 16 16 C 0.05 0.42 2.93 -26.66 -0.08 0.34 16 17 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 18 C 0.03 0.26 6.34 37.23 0.24 0.50 16 19 O -0.38 -3.49 10.85 -48.80 -0.53 -4.02 16 20 C 0.02 0.15 7.05 37.23 0.26 0.42 16 21 C 0.02 0.18 7.05 37.23 0.26 0.44 16 22 O -0.37 -3.90 10.25 -48.80 -0.50 -4.40 16 23 N -0.50 -9.98 10.39 -12.25 -0.13 -10.11 16 24 C 0.07 1.47 11.14 -17.35 -0.19 1.28 16 25 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.14 3.08 5.75 -52.49 -0.30 2.78 16 27 H 0.12 1.78 6.70 -52.49 -0.35 1.42 16 28 H 0.40 5.60 8.48 -40.82 -0.35 5.26 16 29 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 30 H 0.07 0.73 7.93 -51.92 -0.41 0.32 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -31.62 312.67 -6.99 -38.62 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.63 Total: 5.17 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.49 Total: -5.52 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.31 Total: -45.64 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.03 Total: -14.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.62 -6.99 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168264979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.050 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds