Wall clock time and date at job start Tue Mar 31 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48494 * 109.47557 * 269.99991 * 3 2 1 5 5 H 1.48500 * 109.47336 * 30.00548 * 3 2 1 6 6 H 1.48505 * 109.47075 * 150.00297 * 3 2 1 7 7 C 1.38626 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 359.97438 * 7 2 1 9 9 O 1.34812 * 120.00404 * 180.27316 * 7 2 1 10 10 C 1.35812 * 117.00148 * 174.66657 * 9 7 2 11 11 C 1.39453 * 120.40321 * 5.47935 * 10 9 7 12 12 C 1.38214 * 118.44624 * 179.97438 * 11 10 9 13 13 C 1.39165 * 119.17016 * 359.97438 * 12 11 10 14 14 N 1.39127 * 119.62841 * 180.02562 * 13 12 11 15 15 C 1.46491 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.52998 * 109.47374 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.52297 * 59.87017 * 16 15 14 18 18 C 1.53144 * 109.52505 * 179.97438 * 16 15 14 19 19 O 1.43080 * 109.14999 * 175.21809 * 18 16 15 20 20 C 1.43082 * 113.59042 * 302.04653 * 19 18 16 21 21 C 1.53140 * 109.14697 * 57.95386 * 20 19 18 22 22 O 1.43073 * 109.15612 * 304.68379 * 21 20 19 23 23 N 1.32388 * 120.74309 * 359.97438 * 13 12 11 24 24 C 1.31936 * 121.68610 * 359.76927 * 23 13 12 25 25 H 0.97000 * 119.99522 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.77407 * 359.94931 * 11 10 9 27 27 H 1.07996 * 120.40913 * 179.97438 * 12 11 10 28 28 H 0.97004 * 119.99872 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.47238 * 300.00165 * 15 14 13 30 30 H 1.09009 * 109.47224 * 59.99643 * 15 14 13 31 31 H 1.09000 * 109.52963 * 295.11997 * 18 16 15 32 32 H 1.08995 * 109.52643 * 55.31824 * 18 16 15 33 33 H 1.08996 * 109.52174 * 177.85462 * 20 19 18 34 34 H 1.09001 * 109.52435 * 298.05174 * 20 19 18 35 35 H 1.09000 * 109.52427 * 64.59304 * 21 20 19 36 36 H 1.08999 * 109.51978 * 184.78091 * 21 20 19 37 37 H 1.08001 * 119.61747 * 180.26940 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0050 10 6 3.9732 -2.4057 0.1166 11 6 3.2269 -3.5836 0.1048 12 6 3.8954 -4.7878 0.2206 13 6 5.2816 -4.7849 0.3436 14 7 5.9643 -5.9915 0.4602 15 6 5.2241 -7.2557 0.4524 16 6 6.2046 -8.4217 0.5930 17 1 6.7527 -8.3258 1.5302 18 6 5.4319 -9.7439 0.5856 19 8 6.3618 -10.8311 0.6048 20 6 7.2806 -10.8183 -0.4919 21 6 8.0532 -9.4961 -0.4845 22 8 7.1234 -8.4089 -0.5037 23 7 5.9581 -3.6469 0.3500 24 6 5.3527 -2.4802 0.2366 25 1 -0.4849 0.8401 0.0004 26 1 2.1516 -3.5556 0.0080 27 1 3.3488 -5.7192 0.2155 28 1 6.9305 -5.9958 0.5466 29 1 4.5204 -7.2698 1.2846 30 1 4.6784 -7.3514 -0.4864 31 1 4.7915 -9.7967 1.4661 32 1 4.8204 -9.8035 -0.3147 33 1 7.9791 -11.6490 -0.3917 34 1 6.7312 -10.9139 -1.4285 35 1 8.6647 -9.4366 0.4159 36 1 8.6935 -9.4434 -1.3650 37 1 5.9379 -1.5725 0.2415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168264979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:05 Heat of formation + Delta-G solvation = -90.293650 kcal Electronic energy + Delta-G solvation = -21094.078145 eV Core-core repulsion = 17643.973893 eV Total energy + Delta-G solvation = -3450.104252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39053 -40.91827 -39.22377 -37.32611 -36.28669 -34.40543 -32.98707 -32.96164 -30.27733 -29.18197 -27.25631 -26.29157 -24.91577 -23.88675 -22.67746 -22.08526 -20.04454 -19.18654 -18.15679 -18.01590 -17.58860 -17.38366 -16.95951 -16.32375 -16.22590 -16.05712 -15.88979 -15.41853 -15.02118 -14.89808 -14.49541 -14.41707 -14.32964 -13.92780 -13.72392 -13.37744 -13.21007 -12.77975 -12.73875 -12.39978 -12.07904 -11.72452 -11.62012 -11.35147 -11.05611 -10.63170 -10.45483 -10.40305 -10.19524 -8.45636 -8.31335 -6.14518 0.34436 0.67371 1.36221 1.40177 1.56338 2.17894 2.32502 2.60175 2.77744 2.83824 3.09094 3.21941 3.60310 3.74327 3.81601 3.95084 4.02764 4.09636 4.15320 4.24459 4.30766 4.36367 4.47628 4.56835 4.61562 4.73798 4.85788 4.88609 4.89980 5.04986 5.37550 5.40866 5.67481 5.96770 5.99086 6.03498 6.22218 6.70628 6.89211 7.28087 7.63915 8.66058 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048899 B = 0.002919 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.465872 B = 9591.643766 C =10023.309964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.394 4.394 8 H 0.082 0.918 9 O -0.241 6.241 10 C 0.027 3.973 11 C -0.142 4.142 12 C -0.185 4.185 13 C 0.336 3.664 14 N -0.721 5.721 15 C 0.141 3.859 16 C 0.051 3.949 17 H 0.078 0.922 18 C 0.033 3.967 19 O -0.395 6.395 20 C 0.020 3.980 21 C 0.020 3.980 22 O -0.393 6.393 23 N -0.516 5.516 24 C 0.080 3.920 25 H 0.283 0.717 26 H 0.129 0.871 27 H 0.154 0.846 28 H 0.404 0.596 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.034 -21.086 0.657 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.099 0.901 9 O -0.148 6.148 10 C -0.025 4.025 11 C -0.169 4.169 12 C -0.209 4.209 13 C 0.101 3.899 14 N -0.359 5.359 15 C 0.016 3.984 16 C -0.007 4.007 17 H 0.096 0.904 18 C -0.044 4.044 19 O -0.314 6.314 20 C -0.057 4.057 21 C -0.056 4.056 22 O -0.313 6.313 23 N -0.234 5.234 24 C -0.078 4.078 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.172 0.828 28 H 0.240 0.760 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.685 -20.919 0.713 25.569 hybrid contribution -0.816 0.730 -0.192 1.112 sum 13.869 -20.189 0.521 24.499 Atomic orbital electron populations 1.69737 1.06858 1.29463 1.50666 1.25224 0.95833 1.02083 0.95756 0.85235 0.78934 0.77527 0.79198 1.19236 1.19589 1.18403 1.20674 0.78174 0.96050 1.52219 0.90056 1.83522 1.21004 1.26188 1.84107 1.20354 0.94020 0.86142 1.01997 1.21596 1.00964 0.92145 1.02202 1.21377 0.93083 0.98602 1.07868 1.18310 0.88594 0.86578 0.96454 1.43959 1.08992 1.00734 1.82189 1.21387 0.93697 0.80320 1.02960 1.22943 0.91621 0.95286 0.90877 0.90444 1.23250 0.91377 0.84717 1.05042 1.88090 1.47287 1.47568 1.48441 1.23433 0.93087 0.99068 0.90086 1.23431 0.91669 0.86126 1.04360 1.88149 1.46996 1.48640 1.47479 1.67079 1.39485 0.97269 1.19548 1.21700 0.88776 0.95508 1.01785 0.90712 0.85313 0.82842 0.76030 0.88835 0.91396 0.85583 0.91253 0.85726 0.91841 0.91758 0.86197 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.96 21.61 0.30 -54.58 16 2 C 0.01 0.52 5.49 84.82 0.47 0.98 16 3 Si 0.97 45.16 28.62 68.60 1.96 47.12 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.39 -22.81 9.96 67.91 0.68 -22.13 16 8 H 0.08 4.86 5.49 -2.91 -0.02 4.85 16 9 O -0.24 -12.88 8.59 -23.25 -0.20 -13.08 16 10 C 0.03 1.25 6.67 22.67 0.15 1.40 16 11 C -0.14 -6.06 9.26 22.56 0.21 -5.85 16 12 C -0.18 -6.35 9.32 22.49 0.21 -6.14 16 13 C 0.34 11.36 7.65 133.03 1.02 12.38 16 14 N -0.72 -18.54 5.63 -344.95 -1.94 -20.48 16 15 C 0.14 2.59 4.59 86.38 0.40 2.99 16 16 C 0.05 0.80 2.93 30.64 0.09 0.89 16 17 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 18 C 0.03 0.44 6.34 72.03 0.46 0.90 16 19 O -0.39 -6.31 10.85 -136.01 -1.48 -7.78 16 20 C 0.02 0.23 7.05 72.03 0.51 0.74 16 21 C 0.02 0.26 7.05 72.03 0.51 0.77 16 22 O -0.39 -7.37 10.25 -136.01 -1.39 -8.77 16 23 N -0.52 -19.56 10.39 -192.66 -2.00 -21.56 16 24 C 0.08 3.26 11.14 84.78 0.94 4.21 16 25 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.13 5.80 5.75 -2.91 -0.02 5.79 16 27 H 0.15 4.11 6.70 -2.91 -0.02 4.09 16 28 H 0.40 10.17 8.48 -92.71 -0.79 9.38 16 29 H 0.09 1.43 7.92 -2.39 -0.02 1.41 16 30 H 0.07 1.28 7.93 -2.38 -0.02 1.26 16 31 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.17 6.10 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -68.87 312.67 1.20 -67.67 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.31 Total: 20.32 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.63 Total: -8.87 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -3.64 Total: -96.62 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -3.07 Total: -29.63 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.96 Total: 47.12 kcal Total: -68.87 1.20 -67.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168264979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.620 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds