Wall clock time and date at job start Tue Mar 31 2020 01:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47534 * 270.00290 * 3 2 1 5 5 H 1.48499 * 109.47196 * 30.00756 * 3 2 1 6 6 H 1.48502 * 109.47108 * 150.00323 * 3 2 1 7 7 C 1.37879 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.36005 * 116.99661 * 179.97438 * 10 9 7 12 12 C 1.38700 * 119.98130 * 359.72420 * 11 10 9 13 13 C 1.38114 * 120.01604 * 179.76386 * 12 11 10 14 14 C 1.38865 * 119.97975 * 0.53437 * 13 12 11 15 15 N 1.39936 * 120.01686 * 179.69874 * 14 13 12 16 16 C 1.46499 * 119.99951 * 0.02562 * 15 14 13 17 17 H 1.08996 * 109.47358 * 324.99469 * 16 15 14 18 18 C 1.53004 * 109.46888 * 204.99684 * 16 15 14 19 19 O 1.42898 * 109.47526 * 295.00267 * 18 16 15 20 20 C 1.50704 * 109.47325 * 85.00084 * 16 15 14 21 21 N 1.34774 * 120.00099 * 179.97438 * 20 16 15 22 22 O 1.21281 * 119.99663 * 359.97438 * 20 16 15 23 23 C 1.38864 * 119.96134 * 359.71945 * 14 13 12 24 24 C 1.38114 * 119.98209 * 0.02562 * 23 14 13 25 25 H 0.97005 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46943 * 60.00185 * 9 7 2 27 27 H 1.08999 * 109.47285 * 300.00325 * 9 7 2 28 28 H 1.08000 * 119.99003 * 359.97438 * 12 11 10 29 29 H 1.07993 * 120.00927 * 180.25438 * 13 12 11 30 30 H 0.97005 * 119.99824 * 180.02562 * 15 14 13 31 31 H 1.09000 * 109.46971 * 54.99973 * 18 16 15 32 32 H 1.08994 * 109.47054 * 174.99566 * 18 16 15 33 33 H 0.96697 * 114.00545 * 179.97438 * 19 18 16 34 34 H 0.97006 * 119.99448 * 0.02562 * 21 20 16 35 35 H 0.96997 * 119.99782 * 179.97438 * 21 20 16 36 36 H 1.07997 * 120.00795 * 180.02562 * 23 14 13 37 37 H 1.07993 * 119.98766 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.6596 -4.8421 0.0000 12 6 0.2845 -5.0233 0.0063 13 6 -0.2443 -6.2992 0.0019 14 6 0.6012 -7.4008 0.0024 15 7 0.0663 -8.6938 0.0044 16 6 -1.3861 -8.8857 0.0053 17 1 -1.8563 -8.0981 0.5940 18 6 -1.7201 -10.2479 0.6168 19 8 -1.2023 -11.2851 -0.2187 20 6 -1.9010 -8.8306 -1.4099 21 7 -3.2175 -8.9837 -1.6545 22 8 -1.1307 -8.6485 -2.3288 23 6 1.9778 -7.2184 0.0015 24 6 2.5049 -5.9418 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 -0.3729 -4.1664 0.0112 29 1 -1.3150 -6.4401 0.0027 30 1 0.6572 -9.4631 0.0051 31 1 -1.2714 -10.3213 1.6074 32 1 -2.8018 -10.3537 0.6993 33 1 -1.3771 -12.1780 0.1087 34 1 -3.8336 -9.1290 -0.9194 35 1 -3.5489 -8.9479 -2.5654 36 1 2.6361 -8.0745 0.0014 37 1 3.5755 -5.7998 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169332937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:19 Heat of formation + Delta-G solvation = -95.667706 kcal Electronic energy + Delta-G solvation = -21231.401780 eV Core-core repulsion = 17781.064491 eV Total energy + Delta-G solvation = -3450.337289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.15167 -39.03331 -37.38863 -36.83777 -34.35941 -33.76612 -32.78277 -30.54711 -30.12031 -27.83618 -26.40324 -24.43749 -23.33426 -21.90669 -20.91402 -20.12938 -18.29630 -17.82278 -17.41304 -16.74922 -16.50015 -16.35542 -15.63508 -14.91163 -14.72952 -14.63187 -14.39320 -14.15294 -13.90330 -13.77541 -13.08000 -12.82363 -12.55602 -12.20991 -12.07352 -11.73917 -11.46193 -11.06799 -10.90796 -10.74574 -10.50699 -10.38026 -10.05199 -9.94590 -9.77018 -9.16485 -8.99735 -8.50919 -8.39609 -6.58980 -6.17744 -4.20435 1.88091 2.22916 2.60201 3.21826 3.28755 3.33505 3.38863 3.54869 3.69850 4.27172 4.43785 4.50670 4.62251 4.72990 4.78211 4.98252 5.15185 5.19365 5.36925 5.43510 5.89671 5.95960 6.02762 6.45622 6.64411 6.67506 6.72377 6.92040 7.08114 7.10997 7.16845 7.25425 7.27634 7.60643 7.76608 7.93470 8.06610 8.21645 8.65129 8.96067 9.44545 10.93695 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.003251 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.824314 B = 8609.949108 C = 9124.135704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.194 3.806 10 O -0.323 6.323 11 C 0.104 3.896 12 C -0.166 4.166 13 C -0.152 4.152 14 C 0.162 3.838 15 N -0.726 5.726 16 C 0.141 3.859 17 H 0.115 0.885 18 C 0.073 3.927 19 O -0.565 6.565 20 C 0.502 3.498 21 N -0.861 5.861 22 O -0.518 6.518 23 C -0.148 4.148 24 C -0.123 4.123 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.404 0.596 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.383 0.617 34 H 0.396 0.604 35 H 0.399 0.601 36 H 0.119 0.881 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 -22.772 3.369 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.559 4.559 8 H 0.088 0.912 9 C 0.122 3.878 10 O -0.236 6.236 11 C 0.056 3.944 12 C -0.185 4.185 13 C -0.174 4.174 14 C 0.063 3.937 15 N -0.360 5.360 16 C 0.029 3.971 17 H 0.132 0.868 18 C -0.005 4.005 19 O -0.370 6.370 20 C 0.284 3.716 21 N -0.426 5.426 22 O -0.391 6.391 23 C -0.170 4.170 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.149 0.851 29 H 0.126 0.874 30 H 0.239 0.761 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.137 0.863 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.513 -21.865 2.557 23.260 hybrid contribution -0.614 0.139 0.215 0.665 sum -8.126 -21.726 2.772 23.361 Atomic orbital electron populations 1.69957 1.06122 1.27429 1.49953 1.24935 0.95035 0.99498 0.94836 0.86260 0.79630 0.81847 0.78338 1.20338 1.20986 1.19508 1.21010 0.94265 0.88910 1.51702 0.91207 1.20547 0.88731 0.82015 0.96554 1.86104 1.38582 1.11662 1.87267 1.19050 0.91443 0.86495 0.97400 1.21201 0.94854 0.97501 1.04943 1.20269 0.97960 0.91347 1.07825 1.17504 0.92187 0.84305 0.99664 1.43882 1.02809 1.04976 1.84285 1.20823 0.85399 0.97359 0.93477 0.86758 1.22393 0.98025 0.86357 0.93761 1.86587 1.81335 1.17667 1.51458 1.21388 0.82218 0.75420 0.92604 1.43916 1.08652 1.77552 1.12455 1.90768 1.55890 1.46476 1.45926 1.20208 0.92513 0.96535 1.07790 1.20158 0.99333 0.89905 1.04835 0.92462 0.96377 0.96376 0.85084 0.87373 0.76107 0.91493 0.92002 0.76975 0.77654 0.77029 0.86315 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.52 -15.40 9.43 -34.44 -0.32 -15.73 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.42 4.49 36.01 0.16 5.58 16 10 O -0.32 -8.32 10.12 -19.76 -0.20 -8.52 16 11 C 0.10 2.30 6.69 -39.24 -0.26 2.04 16 12 C -0.17 -3.41 9.03 -39.46 -0.36 -3.77 16 13 C -0.15 -2.65 9.16 -39.39 -0.36 -3.01 16 14 C 0.16 2.60 6.56 -83.69 -0.55 2.06 16 15 N -0.73 -9.22 4.75 -53.24 -0.25 -9.47 16 16 C 0.14 1.39 2.49 -69.08 -0.17 1.22 16 17 H 0.12 0.98 6.48 -51.93 -0.34 0.65 16 18 C 0.07 0.43 6.65 37.16 0.25 0.67 16 19 O -0.56 -4.02 12.87 -35.23 -0.45 -4.48 16 20 C 0.50 6.18 6.87 -10.98 -0.08 6.11 16 21 N -0.86 -6.61 8.78 31.22 0.27 -6.34 16 22 O -0.52 -9.33 17.20 5.56 0.10 -9.23 16 23 C -0.15 -2.42 9.89 -39.40 -0.39 -2.81 16 24 C -0.12 -2.31 9.98 -39.46 -0.39 -2.71 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.53 7.67 -51.93 -0.40 0.13 16 27 H 0.02 0.52 7.64 -51.93 -0.40 0.12 16 28 H 0.13 2.81 6.29 -52.49 -0.33 2.48 16 29 H 0.11 1.63 6.19 -52.49 -0.33 1.30 16 30 H 0.40 4.75 8.40 -40.82 -0.34 4.41 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 33 H 0.38 0.88 9.12 45.56 0.42 1.29 16 34 H 0.40 1.55 8.34 -40.82 -0.34 1.21 16 35 H 0.40 2.94 8.93 -40.82 -0.36 2.57 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -37.70 321.72 -6.18 -43.88 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.63 Total: 7.11 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.57 Total: -8.75 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.76 Total: -41.64 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.56 Total: -22.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.70 -6.18 -43.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169332937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.786 kcal (2) G-P(sol) polarization free energy of solvation -37.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds