Wall clock time and date at job start Tue Mar 31 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47534 * 270.00290 * 3 2 1 5 5 H 1.48499 * 109.47196 * 30.00756 * 3 2 1 6 6 H 1.48502 * 109.47108 * 150.00323 * 3 2 1 7 7 C 1.37879 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.36005 * 116.99661 * 179.97438 * 10 9 7 12 12 C 1.38700 * 119.98130 * 359.72420 * 11 10 9 13 13 C 1.38114 * 120.01604 * 179.76386 * 12 11 10 14 14 C 1.38865 * 119.97975 * 0.53437 * 13 12 11 15 15 N 1.39936 * 120.01686 * 179.69874 * 14 13 12 16 16 C 1.46499 * 119.99951 * 0.02562 * 15 14 13 17 17 H 1.08996 * 109.47358 * 324.99469 * 16 15 14 18 18 C 1.53004 * 109.46888 * 204.99684 * 16 15 14 19 19 O 1.42898 * 109.47526 * 295.00267 * 18 16 15 20 20 C 1.50704 * 109.47325 * 85.00084 * 16 15 14 21 21 N 1.34774 * 120.00099 * 179.97438 * 20 16 15 22 22 O 1.21281 * 119.99663 * 359.97438 * 20 16 15 23 23 C 1.38864 * 119.96134 * 359.71945 * 14 13 12 24 24 C 1.38114 * 119.98209 * 0.02562 * 23 14 13 25 25 H 0.97005 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46943 * 60.00185 * 9 7 2 27 27 H 1.08999 * 109.47285 * 300.00325 * 9 7 2 28 28 H 1.08000 * 119.99003 * 359.97438 * 12 11 10 29 29 H 1.07993 * 120.00927 * 180.25438 * 13 12 11 30 30 H 0.97005 * 119.99824 * 180.02562 * 15 14 13 31 31 H 1.09000 * 109.46971 * 54.99973 * 18 16 15 32 32 H 1.08994 * 109.47054 * 174.99566 * 18 16 15 33 33 H 0.96697 * 114.00545 * 179.97438 * 19 18 16 34 34 H 0.97006 * 119.99448 * 0.02562 * 21 20 16 35 35 H 0.96997 * 119.99782 * 179.97438 * 21 20 16 36 36 H 1.07997 * 120.00795 * 180.02562 * 23 14 13 37 37 H 1.07993 * 119.98766 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.6596 -4.8421 0.0000 12 6 0.2845 -5.0233 0.0063 13 6 -0.2443 -6.2992 0.0019 14 6 0.6012 -7.4008 0.0024 15 7 0.0663 -8.6938 0.0044 16 6 -1.3861 -8.8857 0.0053 17 1 -1.8563 -8.0981 0.5940 18 6 -1.7201 -10.2479 0.6168 19 8 -1.2023 -11.2851 -0.2187 20 6 -1.9010 -8.8306 -1.4099 21 7 -3.2175 -8.9837 -1.6545 22 8 -1.1307 -8.6485 -2.3288 23 6 1.9778 -7.2184 0.0015 24 6 2.5049 -5.9418 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 -0.3729 -4.1664 0.0112 29 1 -1.3150 -6.4401 0.0027 30 1 0.6572 -9.4631 0.0051 31 1 -1.2714 -10.3213 1.6074 32 1 -2.8018 -10.3537 0.6993 33 1 -1.3771 -12.1780 0.1087 34 1 -3.8336 -9.1290 -0.9194 35 1 -3.5489 -8.9479 -2.5654 36 1 2.6361 -8.0745 0.0014 37 1 3.5755 -5.7998 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169332937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:18 Heat of formation + Delta-G solvation = -129.246156 kcal Electronic energy + Delta-G solvation = -21232.857850 eV Core-core repulsion = 17781.064491 eV Total energy + Delta-G solvation = -3451.793360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22970 -40.46706 -38.63369 -37.77144 -35.58496 -34.91094 -34.63395 -31.98688 -31.24698 -29.73804 -27.81473 -25.46868 -25.01268 -23.33374 -22.45001 -21.06975 -19.29327 -18.77371 -18.69295 -18.33917 -17.89078 -17.47057 -16.76308 -16.51216 -16.35735 -15.90062 -15.77608 -15.25820 -15.13002 -14.79697 -14.51623 -14.18677 -13.94813 -13.70994 -13.40839 -13.20092 -12.92953 -12.88677 -12.43682 -12.30415 -12.25299 -11.76732 -11.35948 -11.28083 -10.92062 -10.72862 -10.60079 -10.27365 -9.90468 -8.38276 -8.00025 -6.52545 0.42763 0.74259 1.38917 1.42510 1.54548 1.69883 2.28083 2.31643 2.68987 2.89861 2.95304 2.99477 3.25485 3.84761 3.91562 4.01623 4.05543 4.36320 4.41598 4.44066 4.49904 4.68689 4.70358 4.77502 5.00458 5.03481 5.23925 5.32477 5.47195 5.61200 5.73778 5.88162 5.92469 6.27881 6.51978 6.56456 6.83578 6.91530 6.93313 7.20405 7.41151 8.74350 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.003251 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.824314 B = 8609.949108 C = 9124.135704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.990 3.010 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.215 3.785 10 O -0.343 6.343 11 C 0.050 3.950 12 C -0.177 4.177 13 C -0.158 4.158 14 C 0.180 3.820 15 N -0.716 5.716 16 C 0.129 3.871 17 H 0.131 0.869 18 C 0.080 3.920 19 O -0.591 6.591 20 C 0.496 3.504 21 N -0.838 5.838 22 O -0.586 6.586 23 C -0.147 4.147 24 C -0.119 4.119 25 H 0.274 0.726 26 H -0.007 1.007 27 H -0.001 1.001 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.403 0.597 34 H 0.417 0.583 35 H 0.403 0.597 36 H 0.156 0.844 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -24.589 4.239 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.141 3.859 10 O -0.258 6.258 11 C 0.003 3.997 12 C -0.197 4.197 13 C -0.180 4.180 14 C 0.078 3.922 15 N -0.348 5.348 16 C 0.019 3.981 17 H 0.149 0.851 18 C 0.001 3.999 19 O -0.401 6.401 20 C 0.279 3.721 21 N -0.403 5.403 22 O -0.464 6.464 23 C -0.168 4.168 24 C -0.138 4.138 25 H 0.083 0.917 26 H 0.011 0.989 27 H 0.017 0.983 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.247 0.753 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.248 0.752 35 H 0.234 0.766 36 H 0.173 0.827 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.193 -23.780 3.465 25.390 hybrid contribution -0.585 0.419 -0.062 0.722 sum -8.778 -23.361 3.402 25.187 Atomic orbital electron populations 1.70067 1.07791 1.28993 1.49648 1.26003 0.96068 1.03447 0.93438 0.85086 0.78357 0.76443 0.78934 1.19239 1.19508 1.18697 1.21350 0.94359 0.90304 1.53501 0.91607 1.20070 0.88487 0.82948 0.94374 1.86014 1.38270 1.12804 1.88735 1.19459 0.92799 0.85729 1.01700 1.21118 0.94181 0.98314 1.06078 1.20410 0.99410 0.90391 1.07839 1.17658 0.92195 0.85539 0.96781 1.44003 1.04597 1.03596 1.82620 1.21262 0.83500 1.00830 0.92528 0.85146 1.22443 1.00319 0.83669 0.93434 1.86532 1.81867 1.19262 1.52422 1.21835 0.82974 0.74387 0.92872 1.43731 1.07661 1.75301 1.13615 1.90746 1.57759 1.50029 1.47882 1.20587 0.93296 0.96516 1.06449 1.20398 0.99711 0.89874 1.03804 0.91739 0.98911 0.98307 0.87431 0.85134 0.75281 0.89790 0.88303 0.74566 0.75154 0.76637 0.82660 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.56 5.46 84.66 0.46 1.03 16 3 Si 0.99 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -34.42 9.43 25.60 0.24 -34.18 16 8 H 0.07 4.00 7.81 -2.91 -0.02 3.97 16 9 C 0.21 12.84 4.49 71.24 0.32 13.16 16 10 O -0.34 -18.91 10.12 -93.60 -0.95 -19.85 16 11 C 0.05 2.31 6.69 22.49 0.15 2.46 16 12 C -0.18 -7.73 9.03 22.35 0.20 -7.53 16 13 C -0.16 -5.51 9.16 22.39 0.21 -5.31 16 14 C 0.18 5.52 6.56 38.15 0.25 5.77 16 15 N -0.72 -16.37 4.75 -322.35 -1.53 -17.90 16 16 C 0.13 2.17 2.49 44.25 0.11 2.28 16 17 H 0.13 1.80 6.48 -2.39 -0.02 1.78 16 18 C 0.08 0.59 6.65 71.98 0.48 1.07 16 19 O -0.59 -6.40 12.87 -148.98 -1.92 -8.31 16 20 C 0.50 11.28 6.87 87.66 0.60 11.88 16 21 N -0.84 -10.79 8.78 -173.53 -1.52 -12.31 16 22 O -0.59 -20.83 17.20 -3.03 -0.05 -20.88 16 23 C -0.15 -4.55 9.89 22.39 0.22 -4.33 16 24 C -0.12 -4.50 9.98 22.35 0.22 -4.28 16 25 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 26 H -0.01 -0.43 7.67 -2.39 -0.02 -0.45 16 27 H 0.00 -0.05 7.64 -2.39 -0.02 -0.07 16 28 H 0.11 5.07 6.29 -2.91 -0.02 5.05 16 29 H 0.13 3.82 6.19 -2.91 -0.02 3.80 16 30 H 0.41 8.43 8.40 -92.70 -0.78 7.65 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.04 7.71 -2.39 -0.02 0.02 16 33 H 0.40 0.42 9.12 -74.06 -0.68 -0.26 16 34 H 0.42 1.77 8.34 -92.70 -0.77 1.00 16 35 H 0.40 5.17 8.93 -92.71 -0.83 4.34 16 36 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -86.79 321.72 -2.09 -88.89 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -1.90 Total: 17.40 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.47 Total: -17.98 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.77 Total: -86.26 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.92 Total: -49.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -86.79 -2.09 -88.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169332937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.361 kcal (2) G-P(sol) polarization free energy of solvation -86.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds