Wall clock time and date at job start Tue Mar 31 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86795 * 120.00268 * 2 1 4 4 H 1.48500 * 109.47194 * 270.00032 * 3 2 1 5 5 H 1.48497 * 109.47175 * 29.99959 * 3 2 1 6 6 H 1.48499 * 109.47419 * 150.00035 * 3 2 1 7 7 C 1.38633 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00005 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.35820 * 117.00200 * 185.05328 * 9 7 2 11 11 C 1.39449 * 120.40149 * 354.52590 * 10 9 7 12 12 C 1.38214 * 118.44880 * 180.27126 * 11 10 9 13 13 C 1.39163 * 119.16976 * 359.50622 * 12 11 10 14 14 N 1.39124 * 119.63357 * 180.23080 * 13 12 11 15 15 C 1.47442 * 110.99948 * 60.14304 * 14 13 12 16 16 C 1.54321 * 107.23182 * 123.26287 * 15 14 13 17 17 H 1.09007 * 110.70283 * 263.89767 * 16 15 14 18 18 O 1.42895 * 110.70618 * 140.84437 * 16 15 14 19 19 C 1.55131 * 103.02124 * 22.28189 * 16 15 14 20 20 C 1.47841 * 111.00122 * 180.98904 * 14 13 12 21 21 H 1.09001 * 110.37422 * 332.46427 * 20 14 13 22 22 C 1.52996 * 110.37522 * 94.80351 * 20 14 13 23 23 O 1.42903 * 109.46922 * 65.00381 * 22 20 14 24 24 N 1.32385 * 120.73601 * 0.50044 * 13 12 11 25 25 C 1.31933 * 121.69639 * 359.75004 * 24 13 12 26 26 H 0.97001 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.77588 * 359.97438 * 11 10 9 28 28 H 1.07996 * 120.41403 * 179.74353 * 12 11 10 29 29 H 1.08997 * 109.89011 * 242.66804 * 15 14 13 30 30 H 1.08999 * 109.88979 * 3.69296 * 15 14 13 31 31 H 0.96695 * 114.00787 * 61.44681 * 18 16 15 32 32 H 1.09000 * 110.99374 * 82.43704 * 19 16 15 33 33 H 1.09006 * 110.99586 * 206.26075 * 19 16 15 34 34 H 1.09005 * 109.47464 * 184.99524 * 22 20 14 35 35 H 1.08994 * 109.47210 * 304.99915 * 22 20 14 36 36 H 0.96706 * 113.99846 * 180.02562 * 23 22 20 37 37 H 1.07996 * 119.62474 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0704 -3.5048 0.1077 11 6 3.4636 -3.4474 0.0972 12 6 4.1721 -4.6294 0.2030 13 6 3.4765 -5.8284 0.3262 14 7 4.1800 -7.0235 0.4382 15 6 5.0475 -7.0162 1.6304 16 6 4.6543 -8.2365 2.4893 17 1 3.9498 -7.9477 3.2694 18 8 5.8134 -8.8478 3.0590 19 6 3.9785 -9.1832 1.4629 20 6 3.2572 -8.1745 0.5344 21 1 2.3090 -7.8650 0.9741 22 6 3.0289 -8.7912 -0.8470 23 8 4.2552 -9.3423 -1.3311 24 7 2.1528 -5.8451 0.3326 25 6 1.4450 -4.7366 0.2285 26 1 -0.4850 0.8401 -0.0004 27 1 3.9771 -2.5019 0.0036 28 1 5.2520 -4.6223 0.1941 29 1 6.0921 -7.0957 1.3294 30 1 4.8935 -6.0969 2.1954 31 1 6.3130 -8.2688 3.6508 32 1 4.7234 -9.7573 0.9118 33 1 3.2629 -9.8435 1.9529 34 1 2.2801 -9.5800 -0.7736 35 1 2.6796 -8.0216 -1.5352 36 1 4.1850 -9.7509 -2.2048 37 1 0.3664 -4.7890 0.2371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170285259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:02 Heat of formation + Delta-G solvation = -94.509312 kcal Electronic energy + Delta-G solvation = -21874.591708 eV Core-core repulsion = 18424.304651 eV Total energy + Delta-G solvation = -3450.287057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86121 -40.38293 -38.70485 -37.60336 -36.44557 -34.35370 -33.26516 -32.42559 -30.63916 -29.20606 -27.27746 -26.10087 -24.63344 -23.57335 -21.97817 -21.35008 -19.87140 -19.25381 -18.52359 -18.17432 -17.69222 -17.30637 -16.53188 -16.27497 -15.78544 -15.67977 -15.54275 -15.20194 -14.83048 -14.46358 -14.36399 -14.21407 -14.17453 -13.60605 -13.49442 -13.33028 -12.80977 -12.72412 -12.56031 -12.15479 -11.99527 -11.65196 -11.62398 -11.15649 -10.97054 -10.82792 -10.65571 -10.51098 -10.14473 -8.69191 -8.49637 -6.16782 0.28839 0.44752 1.36639 1.44819 1.53441 2.14950 2.50581 2.81479 3.10594 3.14934 3.36808 3.39159 3.51537 3.74443 3.82411 4.01503 4.06378 4.16922 4.25908 4.32121 4.38161 4.49132 4.59662 4.70995 4.78597 4.82921 4.92061 4.93763 4.97885 5.19276 5.29446 5.39616 5.51626 5.73834 5.93942 6.28640 6.81838 6.93456 6.99885 7.05160 7.68683 8.72205 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.003853 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.553106 B = 7265.194391 C = 7677.572646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.217 6.217 10 C 0.058 3.942 11 C -0.173 4.173 12 C -0.122 4.122 13 C 0.213 3.787 14 N -0.452 5.452 15 C 0.018 3.982 16 C 0.091 3.909 17 H 0.071 0.929 18 O -0.567 6.567 19 C -0.108 4.108 20 C 0.071 3.929 21 H 0.090 0.910 22 C 0.102 3.898 23 O -0.576 6.576 24 N -0.477 5.477 25 C 0.046 3.954 26 H 0.274 0.726 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.390 0.610 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -14.434 2.952 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.122 6.122 10 C 0.004 3.996 11 C -0.199 4.199 12 C -0.144 4.144 13 C -0.018 4.018 14 N -0.173 5.173 15 C -0.109 4.109 16 C 0.030 3.970 17 H 0.089 0.911 18 O -0.374 6.374 19 C -0.146 4.146 20 C -0.036 4.036 21 H 0.108 0.892 22 C 0.023 3.977 23 O -0.383 6.383 24 N -0.191 5.191 25 C -0.114 4.114 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.239 0.761 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.499 -15.397 2.804 18.308 hybrid contribution -0.109 2.231 0.065 2.235 sum 9.390 -13.166 2.870 16.424 Atomic orbital electron populations 1.70178 1.07995 1.28988 1.48079 1.26551 0.96811 1.02641 0.95629 0.84598 0.77895 0.74599 0.79244 1.18904 1.19706 1.17502 1.21813 0.92595 0.81243 1.53511 0.87879 1.83969 1.35225 1.12147 1.80845 1.20746 0.92065 0.89292 0.97467 1.21626 0.93138 0.99895 1.05281 1.21456 1.01281 0.90300 1.01359 1.19858 0.88209 0.91045 1.02738 1.60890 1.19066 0.99653 1.37684 1.23739 0.98799 0.99141 0.89175 1.22951 0.87632 0.91986 0.94387 0.91090 1.86486 1.40520 1.43933 1.66507 1.22639 0.99828 0.97051 0.95115 1.22719 0.96195 0.88707 0.96022 0.89184 1.21851 0.86194 0.95994 0.93646 1.86482 1.33600 1.78632 1.39567 1.67313 1.07615 1.29493 1.14723 1.21677 0.99908 0.84944 1.04840 0.91687 0.84128 0.83140 0.88508 0.91846 0.75309 0.89513 0.88853 0.91101 0.95242 0.76110 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.67 21.61 0.30 -53.77 16 2 C -0.02 -0.97 5.49 84.83 0.47 -0.50 16 3 Si 1.02 40.90 29.55 68.60 2.03 42.93 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.42 -22.95 9.50 67.91 0.64 -22.31 16 8 H 0.10 5.15 5.25 -2.91 -0.02 5.14 16 9 O -0.22 -12.38 9.77 -23.23 -0.23 -12.60 16 10 C 0.06 2.75 6.67 22.66 0.15 2.90 16 11 C -0.17 -7.14 9.25 22.56 0.21 -6.93 16 12 C -0.12 -4.29 9.05 22.49 0.20 -4.08 16 13 C 0.21 7.47 6.15 133.03 0.82 8.29 16 14 N -0.45 -13.41 4.82 -668.04 -3.22 -16.63 16 15 C 0.02 0.44 6.22 86.65 0.54 0.98 16 16 C 0.09 1.94 4.32 31.77 0.14 2.08 16 17 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 18 O -0.57 -11.03 13.40 -148.98 -2.00 -13.02 16 19 C -0.11 -2.46 6.16 31.98 0.20 -2.26 16 20 C 0.07 1.88 2.51 45.39 0.11 2.00 16 21 H 0.09 2.62 6.56 -2.39 -0.02 2.60 16 22 C 0.10 2.45 7.02 71.98 0.51 2.96 16 23 O -0.58 -13.28 12.40 -148.98 -1.85 -15.13 16 24 N -0.48 -18.12 8.16 -192.68 -1.57 -19.69 16 25 C 0.05 1.94 11.14 84.78 0.94 2.88 16 26 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.14 5.68 5.76 -2.91 -0.02 5.66 16 28 H 0.15 4.37 8.00 -2.91 -0.02 4.35 16 29 H 0.10 2.19 8.06 -2.39 -0.02 2.18 16 30 H 0.06 1.54 7.16 -2.39 -0.02 1.53 16 31 H 0.40 4.18 9.11 -74.06 -0.67 3.50 16 32 H 0.09 2.19 7.05 -2.39 -0.02 2.17 16 33 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.39 5.41 9.12 -74.05 -0.68 4.73 16 37 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -70.47 311.55 -1.84 -72.31 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.23 Total: 29.60 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.93 Total: -14.00 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -4.50 Total: -90.08 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -4.07 Total: -40.76 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -70.47 -1.84 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170285259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.203 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds