Wall clock time and date at job start Tue Mar 31 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48500 * 109.46664 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.47128 * 29.99800 * 3 2 1 6 6 H 1.48493 * 109.47033 * 150.00030 * 3 2 1 7 7 C 1.37877 * 120.00005 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85316 * 359.97438 * 7 2 1 9 9 C 1.53229 * 108.53957 * 231.33014 * 8 7 2 10 10 C 1.52965 * 109.41314 * 305.36317 * 9 8 7 11 11 H 1.09001 * 109.41510 * 303.50203 * 10 9 8 12 12 N 1.46494 * 109.41185 * 183.71233 * 10 9 8 13 13 C 1.34780 * 120.00038 * 155.00713 * 12 10 9 14 14 O 1.21589 * 119.99805 * 359.97438 * 13 12 10 15 15 N 1.34771 * 120.00121 * 180.02562 * 13 12 10 16 16 C 1.46507 * 119.99933 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46929 * 179.97438 * 16 15 13 18 18 F 1.39897 * 109.47071 * 59.99445 * 17 16 15 19 19 F 1.39897 * 109.46703 * 179.97438 * 17 16 15 20 20 F 1.39898 * 109.46904 * 299.99540 * 17 16 15 21 21 C 1.52991 * 109.79829 * 63.59014 * 10 9 8 22 22 C 1.51268 * 120.84693 * 179.97438 * 7 2 1 23 23 H 0.96994 * 120.00734 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.62847 * 111.60964 * 8 7 2 25 25 H 1.09010 * 109.78250 * 351.13371 * 8 7 2 26 26 H 1.09002 * 109.48399 * 65.35087 * 9 8 7 27 27 H 1.08999 * 109.48488 * 185.38106 * 9 8 7 28 28 H 0.97000 * 120.00351 * 334.99807 * 12 10 9 29 29 H 0.97000 * 120.00268 * 359.97438 * 15 13 12 30 30 H 1.09001 * 109.46599 * 299.99161 * 16 15 13 31 31 H 1.09000 * 109.47223 * 59.99092 * 16 15 13 32 32 H 1.09005 * 109.47498 * 176.42853 * 21 10 9 33 33 H 1.08997 * 109.48700 * 56.40386 * 21 10 9 34 34 H 1.09000 * 109.62599 * 248.38623 * 22 7 2 35 35 H 1.09001 * 109.62583 * 8.95766 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8237 -3.3820 1.1363 10 6 3.3407 -3.5068 0.9843 11 1 3.5741 -3.9125 -0.0001 12 7 3.8610 -4.4069 2.0163 13 6 5.0184 -5.0672 1.8135 14 8 5.6303 -4.9160 0.7738 15 7 5.4968 -5.8958 2.7627 16 6 6.7546 -6.6139 2.5419 17 6 7.0690 -7.4792 3.7640 18 9 6.0347 -8.4000 3.9619 19 9 8.2698 -8.1653 3.5529 20 9 7.1899 -6.6636 4.8942 21 6 3.9915 -2.1303 1.1342 22 6 3.5170 -1.2164 0.0000 23 1 -0.4851 0.8399 -0.0004 24 1 1.4193 -3.0197 -0.9525 25 1 0.2030 -2.3436 0.1601 26 1 1.5913 -2.9186 2.0952 27 1 1.3713 -4.3727 1.0921 28 1 3.3727 -4.5277 2.8457 29 1 5.0084 -6.0167 3.5920 30 1 6.6605 -7.2490 1.6611 31 1 7.5605 -5.8963 2.3880 32 1 5.0756 -2.2339 1.0884 33 1 3.7080 -1.6965 2.0931 34 1 3.8771 -1.6006 -0.9544 35 1 3.8982 -0.2077 0.1590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187102418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:09 Heat of formation + Delta-G solvation = -201.512401 kcal Electronic energy + Delta-G solvation = -22134.908892 eV Core-core repulsion = 18138.125092 eV Total energy + Delta-G solvation = -3996.783799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.51530 -48.03036 -47.98827 -39.98051 -37.09785 -34.99847 -33.77367 -31.66522 -29.74710 -29.37438 -26.96040 -23.72480 -22.29414 -21.52010 -20.82005 -19.60612 -18.97790 -18.90491 -18.68914 -17.31815 -16.07832 -15.97120 -15.54025 -14.93370 -14.81653 -14.45630 -14.42019 -14.41549 -14.17590 -14.13740 -14.02003 -13.54579 -13.13265 -12.73851 -12.33666 -12.24871 -12.11078 -11.63003 -11.02466 -10.85200 -10.73571 -10.28616 -10.07462 -9.96223 -9.55689 -9.48089 -9.02944 -8.86626 -8.50516 -8.30665 -6.11772 -4.02623 2.13792 2.57257 3.27278 3.27962 3.32468 3.35713 3.36911 3.65702 3.81146 4.32242 4.37699 4.86701 5.00759 5.16159 5.66690 5.86618 6.00544 6.18456 6.44870 6.45949 6.61087 6.70543 6.83303 6.90404 6.98714 7.12235 7.25882 7.43456 7.63396 7.69862 7.78683 8.09169 8.36496 8.68223 8.94536 9.53194 10.97706 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.003417 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.503516 B = 8191.447179 C = 8445.100684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.488 4.488 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.171 3.829 11 H 0.079 0.921 12 N -0.733 5.733 13 C 0.708 3.292 14 O -0.585 6.585 15 N -0.753 5.753 16 C 0.101 3.899 17 C 0.448 3.552 18 F -0.179 7.179 19 F -0.175 7.175 20 F -0.179 7.179 21 C -0.113 4.113 22 C -0.019 4.019 23 H 0.264 0.736 24 H 0.007 0.993 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.392 0.608 29 H 0.401 0.599 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -13.503 9.038 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.507 4.507 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.068 3.932 11 H 0.097 0.903 12 N -0.386 5.386 13 C 0.407 3.593 14 O -0.462 6.462 15 N -0.413 5.413 16 C -0.026 4.026 17 C 0.393 3.607 18 F -0.160 7.160 19 F -0.156 7.156 20 F -0.160 7.160 21 C -0.152 4.152 22 C -0.057 4.057 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.225 0.775 29 H 0.235 0.765 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.335 -13.241 8.066 19.206 hybrid contribution 0.078 0.596 1.160 1.307 sum 11.413 -12.645 9.226 19.372 Atomic orbital electron populations 1.69828 1.06144 1.26961 1.49948 1.24841 0.94707 0.98590 0.94506 0.86676 0.79983 0.83230 0.78574 1.20372 1.21691 1.18941 1.20054 0.89416 0.91443 1.49790 1.19337 0.98676 0.92784 0.91656 1.21948 0.92213 0.98665 1.02421 1.21016 0.94184 0.88404 0.89623 0.90271 1.45642 1.22884 1.47707 1.22349 1.15836 0.81833 0.78554 0.83033 1.90946 1.60032 1.68686 1.26567 1.44781 1.25037 1.49759 1.21708 1.22201 0.89980 0.96407 0.94031 1.20629 0.74719 0.79773 0.85550 1.93225 1.58652 1.68351 1.95821 1.93220 1.46670 1.80864 1.94853 1.93228 1.95699 1.72329 1.54762 1.21912 0.97343 0.95178 1.00810 1.19789 0.96538 0.95507 0.93882 0.92588 0.97504 0.92077 0.92685 0.94550 0.77525 0.76469 0.87009 0.87014 0.94445 0.93120 0.96213 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 12.73 55.43 0.71 -24.45 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.87 27.53 -169.99 -4.68 16.19 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.03 6.10 56.52 0.35 -5.69 16 7 C -0.49 -12.60 5.51 -98.93 -0.55 -13.15 16 8 C 0.01 0.32 5.96 -27.49 -0.16 0.16 16 9 C -0.11 -2.25 5.40 -26.63 -0.14 -2.39 16 10 C 0.17 3.24 2.35 -67.96 -0.16 3.08 16 11 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 12 N -0.73 -11.03 5.08 -58.70 -0.30 -11.33 16 13 C 0.71 10.78 8.53 -86.92 -0.74 10.04 16 14 O -0.59 -11.29 16.01 5.29 0.08 -11.20 16 15 N -0.75 -8.05 5.42 -65.22 -0.35 -8.40 16 16 C 0.10 0.90 5.64 -4.04 -0.02 0.88 16 17 C 0.45 3.68 3.11 37.16 0.12 3.80 16 18 F -0.18 -1.58 17.18 2.25 0.04 -1.54 16 19 F -0.17 -1.49 17.32 2.25 0.04 -1.46 16 20 F -0.18 -1.60 17.18 2.25 0.04 -1.57 16 21 C -0.11 -2.34 5.50 -26.64 -0.15 -2.49 16 22 C -0.02 -0.45 5.59 -27.50 -0.15 -0.60 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.06 1.60 7.08 -51.92 -0.37 1.23 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.39 4.70 8.61 -40.82 -0.35 4.35 16 29 H 0.40 3.35 8.37 -40.82 -0.34 3.01 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.83 4.59 -51.93 -0.24 0.59 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -30.05 301.50 -6.21 -36.26 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.27 Total: 1.69 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.06 Total: 1.27 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.05 Total: -44.19 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.12 Total: -4.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.68 Total: 16.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.05 -6.21 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187102418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.254 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds