Wall clock time and date at job start Tue Mar 31 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48500 * 109.46664 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.47128 * 29.99800 * 3 2 1 6 6 H 1.48493 * 109.47033 * 150.00030 * 3 2 1 7 7 C 1.37877 * 120.00005 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85316 * 359.97438 * 7 2 1 9 9 C 1.53229 * 108.53957 * 231.33014 * 8 7 2 10 10 C 1.52965 * 109.41314 * 305.36317 * 9 8 7 11 11 H 1.09001 * 109.41510 * 303.50203 * 10 9 8 12 12 N 1.46494 * 109.41185 * 183.71233 * 10 9 8 13 13 C 1.34780 * 120.00038 * 155.00713 * 12 10 9 14 14 O 1.21589 * 119.99805 * 359.97438 * 13 12 10 15 15 N 1.34771 * 120.00121 * 180.02562 * 13 12 10 16 16 C 1.46507 * 119.99933 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46929 * 179.97438 * 16 15 13 18 18 F 1.39897 * 109.47071 * 59.99445 * 17 16 15 19 19 F 1.39897 * 109.46703 * 179.97438 * 17 16 15 20 20 F 1.39898 * 109.46904 * 299.99540 * 17 16 15 21 21 C 1.52991 * 109.79829 * 63.59014 * 10 9 8 22 22 C 1.51268 * 120.84693 * 179.97438 * 7 2 1 23 23 H 0.96994 * 120.00734 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.62847 * 111.60964 * 8 7 2 25 25 H 1.09010 * 109.78250 * 351.13371 * 8 7 2 26 26 H 1.09002 * 109.48399 * 65.35087 * 9 8 7 27 27 H 1.08999 * 109.48488 * 185.38106 * 9 8 7 28 28 H 0.97000 * 120.00351 * 334.99807 * 12 10 9 29 29 H 0.97000 * 120.00268 * 359.97438 * 15 13 12 30 30 H 1.09001 * 109.46599 * 299.99161 * 16 15 13 31 31 H 1.09000 * 109.47223 * 59.99092 * 16 15 13 32 32 H 1.09005 * 109.47498 * 176.42853 * 21 10 9 33 33 H 1.08997 * 109.48700 * 56.40386 * 21 10 9 34 34 H 1.09000 * 109.62599 * 248.38623 * 22 7 2 35 35 H 1.09001 * 109.62583 * 8.95766 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8237 -3.3820 1.1363 10 6 3.3407 -3.5068 0.9843 11 1 3.5741 -3.9125 -0.0001 12 7 3.8610 -4.4069 2.0163 13 6 5.0184 -5.0672 1.8135 14 8 5.6303 -4.9160 0.7738 15 7 5.4968 -5.8958 2.7627 16 6 6.7546 -6.6139 2.5419 17 6 7.0690 -7.4792 3.7640 18 9 6.0347 -8.4000 3.9619 19 9 8.2698 -8.1653 3.5529 20 9 7.1899 -6.6636 4.8942 21 6 3.9915 -2.1303 1.1342 22 6 3.5170 -1.2164 0.0000 23 1 -0.4851 0.8399 -0.0004 24 1 1.4193 -3.0197 -0.9525 25 1 0.2030 -2.3436 0.1601 26 1 1.5913 -2.9186 2.0952 27 1 1.3713 -4.3727 1.0921 28 1 3.3727 -4.5277 2.8457 29 1 5.0084 -6.0167 3.5920 30 1 6.6605 -7.2490 1.6611 31 1 7.5605 -5.8963 2.3880 32 1 5.0756 -2.2339 1.0884 33 1 3.7080 -1.6965 2.0931 34 1 3.8771 -1.6006 -0.9544 35 1 3.8982 -0.2077 0.1590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187102418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:08 Heat of formation + Delta-G solvation = -221.980551 kcal Electronic energy + Delta-G solvation = -22135.796457 eV Core-core repulsion = 18138.125092 eV Total energy + Delta-G solvation = -3997.671365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.19921 -48.71105 -48.67543 -41.21947 -38.67632 -36.08778 -35.37910 -33.41206 -31.47811 -30.47790 -28.57021 -24.67992 -23.81120 -23.27592 -22.05869 -21.24403 -19.97215 -19.65920 -19.44974 -18.42897 -17.75887 -17.17510 -16.60205 -16.36917 -15.88983 -15.58624 -15.50735 -15.18546 -15.10235 -14.97684 -14.82304 -14.80729 -14.59296 -14.35391 -14.06909 -13.92159 -13.41434 -12.95217 -12.76143 -12.65375 -12.53701 -11.92774 -11.82700 -11.45818 -11.35700 -10.86149 -10.70825 -10.53623 -10.44544 -9.77307 -8.15168 -6.09258 1.26966 1.40704 1.43903 1.51419 1.72346 2.08732 2.42918 2.63887 2.95449 2.97003 3.14060 3.37112 4.06498 4.15939 4.24127 4.31289 4.53285 4.74515 4.88477 5.00187 5.06367 5.11120 5.14603 5.27091 5.28161 5.58598 5.60932 5.69436 5.77046 5.82736 5.92791 6.37308 6.96358 7.00463 7.48829 7.51156 8.95311 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.003417 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.503516 B = 8191.447179 C = 8445.100684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.498 4.498 8 C 0.008 3.992 9 C -0.100 4.100 10 C 0.185 3.815 11 H 0.058 0.942 12 N -0.724 5.724 13 C 0.709 3.291 14 O -0.626 6.626 15 N -0.736 5.736 16 C 0.099 3.901 17 C 0.461 3.539 18 F -0.180 7.180 19 F -0.174 7.174 20 F -0.181 7.181 21 C -0.106 4.106 22 C -0.022 4.022 23 H 0.263 0.737 24 H -0.002 1.002 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.410 0.590 29 H 0.415 0.585 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.014 0.986 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -14.359 10.432 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.517 4.517 8 C -0.030 4.030 9 C -0.138 4.138 10 C 0.080 3.920 11 H 0.076 0.924 12 N -0.378 5.378 13 C 0.409 3.591 14 O -0.507 6.507 15 N -0.396 5.396 16 C -0.028 4.028 17 C 0.406 3.594 18 F -0.162 7.162 19 F -0.156 7.156 20 F -0.162 7.162 21 C -0.145 4.145 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.246 0.754 29 H 0.252 0.748 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.729 -14.139 9.524 21.275 hybrid contribution -0.332 0.770 0.707 1.097 sum 12.397 -13.369 10.231 20.906 Atomic orbital electron populations 1.69950 1.07512 1.27464 1.52015 1.25551 0.95319 1.01598 0.94856 0.85864 0.79399 0.79852 0.78528 1.20382 1.21739 1.17527 1.20606 0.90874 0.92011 1.48194 1.19303 0.97271 0.93363 0.93071 1.21701 0.92723 0.98974 1.00451 1.20538 0.93462 0.88188 0.89835 0.92379 1.45206 1.23227 1.47123 1.22267 1.15873 0.81433 0.78765 0.83063 1.90928 1.61133 1.70072 1.28524 1.44524 1.25416 1.48418 1.21201 1.22319 0.89164 0.96607 0.94672 1.20370 0.74579 0.79454 0.85006 1.93229 1.58744 1.68423 1.95801 1.93226 1.46696 1.80826 1.94833 1.93230 1.95708 1.72411 1.54901 1.21789 0.97545 0.95517 0.99662 1.19794 0.94997 0.96320 0.94853 0.92785 0.98380 0.94816 0.92340 0.92151 0.75389 0.74805 0.86362 0.86513 0.94090 0.92665 0.96744 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 12.73 21.45 0.27 -53.21 16 2 C 0.03 1.36 5.46 84.65 0.46 1.82 16 3 Si 0.94 42.69 27.53 68.60 1.89 44.58 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.77 6.10 99.48 0.61 -10.17 16 7 C -0.50 -25.71 5.51 -16.18 -0.09 -25.80 16 8 C 0.01 0.39 5.96 30.10 0.18 0.57 16 9 C -0.10 -3.80 5.40 30.66 0.17 -3.63 16 10 C 0.18 6.71 2.35 44.98 0.11 6.81 16 11 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 12 N -0.72 -19.92 5.08 -457.89 -2.33 -22.25 16 13 C 0.71 19.93 8.53 179.05 1.53 21.46 16 14 O -0.63 -23.19 16.01 -3.99 -0.06 -23.25 16 15 N -0.74 -13.68 5.42 -478.52 -2.59 -16.28 16 16 C 0.10 1.52 5.64 86.38 0.49 2.01 16 17 C 0.46 6.43 3.11 71.98 0.22 6.65 16 18 F -0.18 -2.73 17.18 44.97 0.77 -1.96 16 19 F -0.17 -2.60 17.32 44.97 0.78 -1.82 16 20 F -0.18 -2.78 17.18 44.97 0.77 -2.01 16 21 C -0.11 -4.21 5.50 30.66 0.17 -4.04 16 22 C -0.02 -0.99 5.59 30.09 0.17 -0.82 16 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.03 1.80 7.08 -2.38 -0.02 1.78 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.41 8.45 8.61 -92.71 -0.80 7.65 16 29 H 0.41 5.56 8.37 -92.71 -0.78 4.78 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.04 1.62 4.59 -2.39 -0.01 1.61 16 Total: -1.00 -64.31 301.50 2.37 -61.93 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.53 Total: 9.22 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 3.40 Total: 5.04 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.65 Total: -91.73 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 2.32 Total: -5.79 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.89 Total: 44.58 kcal Total: -64.31 2.37 -61.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187102418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.047 kcal (2) G-P(sol) polarization free energy of solvation -64.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds