Wall clock time and date at job start Tue Mar 31 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00224 * 2 1 4 4 H 1.48501 * 109.47021 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.47264 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47222 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 175.00349 * 7 2 1 9 9 C 1.50698 * 120.00003 * 355.00569 * 7 2 1 10 10 N 1.46506 * 110.43455 * 302.57880 * 9 7 2 11 11 C 1.34778 * 119.99533 * 297.94097 * 10 9 7 12 12 O 1.21582 * 120.00262 * 5.27078 * 11 10 9 13 13 N 1.34781 * 119.99579 * 185.25847 * 11 10 9 14 14 C 1.46500 * 119.99708 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47076 * 180.02562 * 14 13 11 16 16 F 1.39910 * 109.47275 * 59.99866 * 15 14 13 17 17 F 1.39905 * 109.47400 * 179.97438 * 15 14 13 18 18 F 1.39896 * 109.47512 * 299.99842 * 15 14 13 19 19 C 1.54888 * 110.60230 * 179.97438 * 9 7 2 20 20 C 1.54890 * 102.74913 * 203.32649 * 19 9 7 21 21 C 1.54263 * 104.19676 * 37.93624 * 20 19 9 22 22 C 1.53875 * 106.60270 * 336.39260 * 21 20 19 23 23 H 0.97007 * 119.99773 * 5.00346 * 1 2 3 24 24 H 0.96995 * 120.00246 * 117.94271 * 10 9 7 25 25 H 0.96999 * 120.00140 * 0.02562 * 13 11 10 26 26 H 1.09008 * 109.46725 * 299.99717 * 14 13 11 27 27 H 1.09001 * 109.47476 * 59.99636 * 14 13 11 28 28 H 1.09001 * 110.75617 * 85.00762 * 19 9 7 29 29 H 1.09000 * 110.75233 * 321.63582 * 19 9 7 30 30 H 1.09003 * 110.48356 * 279.25815 * 20 19 9 31 31 H 1.08998 * 110.48953 * 156.62501 * 20 19 9 32 32 H 1.09008 * 110.02998 * 95.67793 * 21 20 19 33 33 H 1.09003 * 110.03430 * 217.05293 * 21 20 19 34 34 H 1.09000 * 110.02800 * 119.28098 * 22 21 20 35 35 H 1.08998 * 110.03009 * 240.71303 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 -0.0809 9 6 1.2553 -2.4966 0.1147 10 7 0.4493 -2.5175 1.3379 11 6 1.0496 -2.4365 2.5419 12 8 2.2489 -2.2498 2.6119 13 7 0.3202 -2.5621 3.6683 14 6 0.9726 -2.4734 4.9771 15 6 -0.0724 -2.6488 6.0807 16 9 -0.6847 -3.8999 5.9487 17 9 0.5507 -2.5648 7.3305 18 9 -1.0386 -1.6430 5.9723 19 6 2.2375 -3.6940 0.0926 20 6 1.3415 -4.8623 -0.3884 21 6 0.4175 -4.2206 -1.4440 22 6 0.3627 -2.7164 -1.1241 23 1 -0.4850 0.8369 -0.0733 24 1 -0.5163 -2.5897 1.2813 25 1 -0.6366 -2.7112 3.6125 26 1 1.7251 -3.2575 5.0617 27 1 1.4501 -1.4990 5.0798 28 1 2.6277 -3.8921 1.0909 29 1 3.0495 -3.5146 -0.6121 30 1 0.7555 -5.2598 0.4403 31 1 1.9480 -5.6478 -0.8392 32 1 0.8271 -4.3753 -2.4423 33 1 -0.5808 -4.6535 -1.3791 34 1 0.7457 -2.1413 -1.9671 35 1 -0.6624 -2.4188 -0.9034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187120142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:29 Heat of formation + Delta-G solvation = -192.089386 kcal Electronic energy + Delta-G solvation = -23164.101224 eV Core-core repulsion = 19167.726037 eV Total energy + Delta-G solvation = -3996.375187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.16327 -47.68933 -47.62802 -39.22789 -37.07137 -34.19997 -32.75885 -31.81013 -28.99894 -27.64874 -27.13947 -23.97197 -23.18033 -20.71049 -19.61743 -18.96213 -18.61657 -18.36511 -17.99369 -16.61020 -16.47352 -15.09724 -14.95069 -14.66318 -14.60042 -14.38569 -14.21672 -14.07893 -13.80658 -13.79228 -13.76064 -13.26980 -12.95088 -12.61737 -12.05923 -11.81180 -11.71027 -10.99514 -10.73059 -10.53256 -10.45189 -10.30107 -10.07626 -9.62758 -9.51719 -9.23727 -9.02634 -8.66752 -8.39740 -7.44765 -6.00381 -4.02456 2.60162 3.22251 3.33671 3.39535 3.48252 3.73433 3.99231 4.25948 4.33859 4.47535 5.11675 5.34880 5.40065 5.55417 5.66772 5.72758 5.75677 6.39101 6.41248 6.58032 6.68980 6.76301 6.81879 6.84007 7.06059 7.15779 7.26062 7.44523 7.70930 7.92620 8.15585 8.39004 8.94906 9.15106 9.62303 9.75681 11.04842 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.006361 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.654273 B = 4400.936315 C = 5440.590623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.058 0.942 9 C 0.311 3.689 10 N -0.693 5.693 11 C 0.707 3.293 12 O -0.582 6.582 13 N -0.762 5.762 14 C 0.106 3.894 15 C 0.446 3.554 16 F -0.181 7.181 17 F -0.179 7.179 18 F -0.179 7.179 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.097 4.097 23 H 0.257 0.743 24 H 0.377 0.623 25 H 0.393 0.607 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -7.101 7.168 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.228 3.772 10 N -0.344 5.344 11 C 0.407 3.593 12 O -0.459 6.459 13 N -0.423 5.423 14 C -0.022 4.022 15 C 0.392 3.608 16 F -0.163 7.163 17 F -0.161 7.161 18 F -0.161 7.161 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.136 4.136 23 H 0.067 0.933 24 H 0.209 0.791 25 H 0.227 0.773 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.226 -6.823 7.241 10.195 hybrid contribution -0.791 0.981 0.288 1.293 sum -3.018 -5.842 7.529 9.996 Atomic orbital electron populations 1.69916 1.05744 1.26562 1.50057 1.24901 0.94802 0.98869 0.94422 0.86641 0.80323 0.83547 0.77803 1.20893 1.21534 1.19823 1.21237 0.93355 0.89822 1.48756 0.92366 1.18547 0.86791 0.92432 0.79407 1.45707 1.08997 1.75663 1.04000 1.15843 0.85300 0.78179 0.79940 1.90850 1.13030 1.56245 1.85767 1.45027 1.11189 1.82450 1.03628 1.22053 0.92486 1.06825 0.80822 1.20777 0.82594 0.73886 0.83574 1.93203 1.84749 1.42549 1.95803 1.93194 1.82379 1.95998 1.44506 1.93220 1.65935 1.60906 1.96011 1.22833 0.97971 0.94952 1.00593 1.22358 0.97971 0.97856 0.97927 1.22283 0.98116 0.98170 0.98122 1.22214 1.00596 0.91805 0.99002 0.93292 0.79070 0.77303 0.87707 0.87647 0.91784 0.91960 0.92990 0.93469 0.93157 0.93555 0.91477 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 11.97 55.43 0.66 -22.72 16 2 C 0.07 1.95 5.28 -17.82 -0.09 1.85 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.49 -13.13 6.73 -34.44 -0.23 -13.37 16 8 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 9 C 0.31 7.12 0.32 -131.31 -0.04 7.07 16 10 N -0.69 -14.78 4.45 -51.94 -0.23 -15.01 16 11 C 0.71 15.12 7.86 -86.91 -0.68 14.44 16 12 O -0.58 -14.55 14.04 5.29 0.07 -14.48 16 13 N -0.76 -12.59 5.42 -65.22 -0.35 -12.94 16 14 C 0.11 1.47 5.64 -4.05 -0.02 1.45 16 15 C 0.45 5.49 3.11 37.15 0.12 5.60 16 16 F -0.18 -2.25 17.18 2.25 0.04 -2.21 16 17 F -0.18 -2.15 17.32 2.25 0.04 -2.11 16 18 F -0.18 -2.39 17.18 2.25 0.04 -2.35 16 19 C -0.12 -2.62 5.67 -24.74 -0.14 -2.76 16 20 C -0.12 -2.15 6.79 -25.07 -0.17 -2.32 16 21 C -0.13 -2.24 6.80 -25.61 -0.17 -2.41 16 22 C -0.10 -2.04 5.17 -25.61 -0.13 -2.17 16 23 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 24 H 0.38 7.44 8.29 -40.82 -0.34 7.10 16 25 H 0.39 5.68 8.38 -40.82 -0.34 5.34 16 26 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 27 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.43 6.41 -51.93 -0.33 1.10 16 29 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.52 7.83 -51.93 -0.41 1.11 16 35 H 0.06 1.34 7.57 -51.93 -0.39 0.94 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -29.07 303.26 -6.07 -35.13 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.31 Total: 8.12 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.58 Total: 7.38 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.08 Total: -50.67 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.12 Total: -6.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.07 -6.07 -35.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187120142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.955 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds