Wall clock time and date at job start Tue Mar 31 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00224 * 2 1 4 4 H 1.48501 * 109.47021 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.47264 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47222 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 175.00349 * 7 2 1 9 9 C 1.50698 * 120.00003 * 355.00569 * 7 2 1 10 10 N 1.46506 * 110.43455 * 302.57880 * 9 7 2 11 11 C 1.34778 * 119.99533 * 297.94097 * 10 9 7 12 12 O 1.21582 * 120.00262 * 5.27078 * 11 10 9 13 13 N 1.34781 * 119.99579 * 185.25847 * 11 10 9 14 14 C 1.46500 * 119.99708 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47076 * 180.02562 * 14 13 11 16 16 F 1.39910 * 109.47275 * 59.99866 * 15 14 13 17 17 F 1.39905 * 109.47400 * 179.97438 * 15 14 13 18 18 F 1.39896 * 109.47512 * 299.99842 * 15 14 13 19 19 C 1.54888 * 110.60230 * 179.97438 * 9 7 2 20 20 C 1.54890 * 102.74913 * 203.32649 * 19 9 7 21 21 C 1.54263 * 104.19676 * 37.93624 * 20 19 9 22 22 C 1.53875 * 106.60270 * 336.39260 * 21 20 19 23 23 H 0.97007 * 119.99773 * 5.00346 * 1 2 3 24 24 H 0.96995 * 120.00246 * 117.94271 * 10 9 7 25 25 H 0.96999 * 120.00140 * 0.02562 * 13 11 10 26 26 H 1.09008 * 109.46725 * 299.99717 * 14 13 11 27 27 H 1.09001 * 109.47476 * 59.99636 * 14 13 11 28 28 H 1.09001 * 110.75617 * 85.00762 * 19 9 7 29 29 H 1.09000 * 110.75233 * 321.63582 * 19 9 7 30 30 H 1.09003 * 110.48356 * 279.25815 * 20 19 9 31 31 H 1.08998 * 110.48953 * 156.62501 * 20 19 9 32 32 H 1.09008 * 110.02998 * 95.67793 * 21 20 19 33 33 H 1.09003 * 110.03430 * 217.05293 * 21 20 19 34 34 H 1.09000 * 110.02800 * 119.28098 * 22 21 20 35 35 H 1.08998 * 110.03009 * 240.71303 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 -0.0809 9 6 1.2553 -2.4966 0.1147 10 7 0.4493 -2.5175 1.3379 11 6 1.0496 -2.4365 2.5419 12 8 2.2489 -2.2498 2.6119 13 7 0.3202 -2.5621 3.6683 14 6 0.9726 -2.4734 4.9771 15 6 -0.0724 -2.6488 6.0807 16 9 -0.6847 -3.8999 5.9487 17 9 0.5507 -2.5648 7.3305 18 9 -1.0386 -1.6430 5.9723 19 6 2.2375 -3.6940 0.0926 20 6 1.3415 -4.8623 -0.3884 21 6 0.4175 -4.2206 -1.4440 22 6 0.3627 -2.7164 -1.1241 23 1 -0.4850 0.8369 -0.0733 24 1 -0.5163 -2.5897 1.2813 25 1 -0.6366 -2.7112 3.6125 26 1 1.7251 -3.2575 5.0617 27 1 1.4501 -1.4990 5.0798 28 1 2.6277 -3.8921 1.0909 29 1 3.0495 -3.5146 -0.6121 30 1 0.7555 -5.2598 0.4403 31 1 1.9480 -5.6478 -0.8392 32 1 0.8271 -4.3753 -2.4423 33 1 -0.5808 -4.6535 -1.3791 34 1 0.7457 -2.1413 -1.9671 35 1 -0.6624 -2.4188 -0.9034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187120142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:28 Heat of formation + Delta-G solvation = -210.978811 kcal Electronic energy + Delta-G solvation = -23164.920330 eV Core-core repulsion = 19167.726037 eV Total energy + Delta-G solvation = -3997.194294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.19099 -48.70134 -48.66222 -40.89590 -38.67130 -35.69656 -34.59111 -33.62515 -30.38846 -29.25175 -28.79008 -25.81946 -24.33314 -22.26487 -21.09862 -20.65065 -19.64791 -19.54324 -19.34938 -18.43994 -17.92160 -16.67341 -16.55393 -16.28941 -15.94785 -15.58066 -15.43622 -15.36764 -15.09875 -14.90736 -14.81690 -14.75940 -14.60775 -14.10050 -13.63039 -13.58538 -12.95019 -12.90529 -12.65155 -12.48020 -12.09189 -11.81444 -11.69518 -11.32740 -11.13111 -11.08728 -10.81624 -10.38971 -10.17438 -9.20441 -8.03015 -6.08974 1.34498 1.39059 1.46803 1.49396 1.93124 2.44970 2.60765 2.66479 3.00102 3.12182 3.28630 3.78115 4.15422 4.18949 4.22147 4.29678 4.37509 4.86465 5.02319 5.04976 5.14744 5.22750 5.31838 5.38393 5.42794 5.47007 5.68080 5.78564 5.84165 6.17179 6.33863 6.56013 6.88691 7.47836 7.59728 8.08811 8.98445 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.006361 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.654273 B = 4400.936315 C = 5440.590623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.509 4.509 8 H 0.030 0.970 9 C 0.301 3.699 10 N -0.691 5.691 11 C 0.704 3.296 12 O -0.623 6.623 13 N -0.749 5.749 14 C 0.103 3.897 15 C 0.463 3.537 16 F -0.178 7.178 17 F -0.174 7.174 18 F -0.183 7.183 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.090 4.090 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.406 0.594 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -8.267 7.426 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.549 4.549 8 H 0.048 0.952 9 C 0.217 3.783 10 N -0.341 5.341 11 C 0.404 3.596 12 O -0.503 6.503 13 N -0.410 5.410 14 C -0.024 4.024 15 C 0.408 3.592 16 F -0.160 7.160 17 F -0.155 7.155 18 F -0.165 7.165 19 C -0.162 4.162 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.128 4.128 23 H 0.066 0.934 24 H 0.220 0.780 25 H 0.241 0.759 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.354 -7.995 7.517 11.475 hybrid contribution -0.413 1.355 0.260 1.440 sum -3.768 -6.641 7.777 10.899 Atomic orbital electron populations 1.69948 1.05789 1.26694 1.50514 1.25309 0.95583 1.00513 0.94776 0.86034 0.78753 0.81614 0.77986 1.19853 1.21253 1.21521 1.21414 0.92346 0.92131 1.48979 0.95185 1.18573 0.87641 0.91439 0.80610 1.45418 1.09263 1.75581 1.03828 1.15970 0.84985 0.77865 0.80825 1.90823 1.14946 1.58012 1.86520 1.44723 1.11615 1.81234 1.03419 1.22162 0.93160 1.07109 0.79968 1.20331 0.81906 0.73811 0.83132 1.93216 1.84627 1.42321 1.95788 1.93211 1.82310 1.95979 1.44001 1.93219 1.66047 1.61177 1.96031 1.22730 0.97962 0.96091 0.99440 1.22282 0.97474 0.96840 0.98275 1.22203 0.99663 0.95092 0.98740 1.22037 0.99227 0.94445 0.97138 0.93388 0.78035 0.75855 0.86658 0.88078 0.93649 0.93077 0.92080 0.91060 0.91742 0.91078 0.93881 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.99 11.97 21.45 0.26 -46.73 16 2 C 0.04 2.13 5.28 84.65 0.45 2.58 16 3 Si 0.93 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.51 -27.74 6.73 25.60 0.17 -27.57 16 8 H 0.03 1.75 7.78 -2.91 -0.02 1.73 16 9 C 0.30 13.78 0.32 3.93 0.00 13.78 16 10 N -0.69 -29.06 4.45 -436.49 -1.94 -31.00 16 11 C 0.70 29.84 7.86 179.05 1.41 31.25 16 12 O -0.62 -31.52 14.04 -3.97 -0.06 -31.58 16 13 N -0.75 -23.85 5.42 -478.53 -2.59 -26.44 16 14 C 0.10 2.73 5.64 86.38 0.49 3.21 16 15 C 0.46 10.49 3.11 71.98 0.22 10.72 16 16 F -0.18 -4.00 17.18 44.97 0.77 -3.23 16 17 F -0.17 -3.82 17.32 44.97 0.78 -3.04 16 18 F -0.18 -4.55 17.18 44.97 0.77 -3.77 16 19 C -0.12 -5.15 5.67 31.88 0.18 -4.97 16 20 C -0.11 -3.58 6.79 31.67 0.22 -3.36 16 21 C -0.12 -3.79 6.80 31.32 0.21 -3.58 16 22 C -0.09 -3.68 5.17 31.32 0.16 -3.52 16 23 H 0.26 13.25 8.32 -92.70 -0.77 12.48 16 24 H 0.39 14.78 8.29 -92.71 -0.77 14.01 16 25 H 0.41 10.99 8.38 -92.71 -0.78 10.21 16 26 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.04 2.04 6.41 -2.39 -0.02 2.02 16 29 H 0.05 2.19 8.05 -2.39 -0.02 2.17 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.87 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 35 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 Total: -1.00 -62.25 303.26 3.12 -59.13 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.41 Total: 21.26 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 3.51 Total: 18.53 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.28 Total: -104.17 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 9 Polarization: -12.37 SS G_CDS: 2.32 Total: -10.05 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -62.25 3.12 -59.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187120142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.846 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds