Wall clock time and date at job start Tue Mar 31 2020 01:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47004 * 300.00016 * 3 2 1 6 6 H 1.48502 * 109.46921 * 59.99746 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.52997 * 109.47319 * 270.00076 * 13 12 11 16 16 N 1.46497 * 109.47195 * 64.99855 * 15 13 12 17 17 O 1.21803 * 119.99962 * 45.00383 * 16 15 13 18 18 O 1.21799 * 120.00854 * 225.00230 * 16 15 13 19 19 C 1.50699 * 109.46964 * 150.00106 * 13 12 11 20 20 C 1.38678 * 120.41936 * 219.72167 * 19 13 12 21 21 C 1.38627 * 118.42058 * 179.78589 * 20 19 13 22 22 C 1.38237 * 119.15863 * 0.50929 * 21 20 19 23 23 N 1.31851 * 120.76273 * 359.73082 * 22 21 20 24 24 C 1.31880 * 121.72861 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99861 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 27 27 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 28 28 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 29 29 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 30 30 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 31 31 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 32 32 H 1.09001 * 109.47630 * 185.00204 * 15 13 12 33 33 H 1.09004 * 109.47346 * 305.00335 * 15 13 12 34 34 H 1.07997 * 120.78778 * 0.02562 * 20 19 13 35 35 H 1.07996 * 120.41824 * 180.22034 * 21 20 19 36 36 H 1.07993 * 119.61526 * 179.75319 * 22 21 20 37 37 H 1.08002 * 119.62093 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 8 2.4088 -6.0733 0.0024 13 6 1.7942 -7.3634 0.0035 14 1 0.8343 -7.3090 -0.5101 15 6 1.5753 -7.8228 1.4463 16 7 0.6122 -6.9341 2.1011 17 8 -0.4072 -6.6071 1.5202 18 8 0.8307 -6.5222 3.2263 19 6 2.6887 -8.3465 -0.7066 20 6 2.1477 -9.3093 -1.5453 21 6 3.0091 -10.1899 -2.1811 22 6 4.3683 -10.0865 -1.9512 23 7 4.8471 -9.1613 -1.1430 24 6 4.0580 -8.3035 -0.5261 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6246 -2.5563 0.8919 28 1 2.8725 -3.6040 0.8910 29 1 2.8712 -3.6047 -0.8890 30 1 0.8531 -5.0450 -0.8877 31 1 0.8539 -5.0447 0.8922 32 1 1.1890 -8.8421 1.4485 33 1 2.5224 -7.7921 1.9851 34 1 1.0809 -9.3692 -1.7025 35 1 2.6229 -10.9500 -2.8439 36 1 5.0458 -10.7713 -2.4395 37 1 4.4869 -7.5590 0.1284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:26 Heat of formation + Delta-G solvation = -26.749059 kcal Electronic energy + Delta-G solvation = -21482.579060 eV Core-core repulsion = 18035.230308 eV Total energy + Delta-G solvation = -3447.348752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36151 -40.66085 -38.36838 -36.45243 -34.67224 -33.43997 -32.51507 -31.32574 -31.15543 -27.15506 -26.09662 -24.06653 -23.59148 -22.96412 -21.87966 -20.30004 -18.88441 -18.66583 -18.16827 -17.47542 -17.13552 -16.29518 -15.95320 -15.58672 -15.28378 -14.43173 -14.38777 -14.29372 -13.84461 -13.65373 -13.50343 -12.66959 -12.33866 -11.99964 -11.92619 -11.62014 -11.51037 -11.23772 -11.05977 -10.92080 -10.55884 -10.47010 -10.29405 -10.05334 -9.82958 -9.56418 -9.51752 -9.41760 -9.08723 -8.33851 -5.98310 -4.01029 0.43896 0.63691 0.83444 1.59104 3.19211 3.32262 3.33635 3.40874 3.45625 3.89120 3.96415 4.13778 4.28957 4.38090 4.44657 4.49029 4.57084 4.70491 4.93618 5.05840 5.37236 5.37566 5.55209 5.61315 5.65785 5.74550 6.04214 6.23386 6.26085 6.50503 6.57813 7.03118 7.12210 7.52146 7.57764 7.66540 7.78322 8.00348 8.41820 9.05317 9.62987 11.13148 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.003821 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.925067 B = 7326.650789 C = 8264.736867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.105 4.105 11 C 0.048 3.952 12 O -0.373 6.373 13 C 0.130 3.870 14 H 0.101 0.899 15 C -0.036 4.036 16 N -0.015 5.015 17 O -0.161 6.161 18 O -0.148 6.148 19 C -0.146 4.146 20 C -0.058 4.058 21 C -0.175 4.175 22 C 0.106 3.894 23 N -0.484 5.484 24 C 0.135 3.865 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -24.091 -2.171 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.143 4.143 11 C -0.027 4.027 12 O -0.292 6.292 13 C 0.070 3.930 14 H 0.118 0.882 15 C -0.154 4.154 16 N 0.507 4.493 17 O -0.378 6.378 18 O -0.370 6.370 19 C -0.148 4.148 20 C -0.084 4.084 21 C -0.195 4.195 22 C -0.051 4.051 23 N -0.192 5.192 24 C -0.022 4.022 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.260 -24.365 -2.401 25.041 hybrid contribution -0.980 0.916 -0.049 1.343 sum 4.279 -23.448 -2.450 23.961 Atomic orbital electron populations 1.69980 1.06043 1.26564 1.50676 1.25022 0.94868 0.99298 0.95250 0.86512 0.80105 0.83671 0.77585 1.19719 1.21008 1.20936 1.21213 0.93091 0.90768 1.50784 0.92523 1.19046 0.93804 0.90788 0.97624 1.21675 0.99746 0.91277 1.01559 1.23307 0.92070 0.86371 1.00974 1.88049 1.34604 1.12129 1.94460 1.20765 0.97362 0.85284 0.89636 0.88154 1.25287 0.95655 0.95961 0.98476 1.44496 1.02383 1.00962 1.01437 1.94580 1.16652 1.61107 1.65493 1.94601 1.81887 1.56187 1.04342 1.20414 0.95831 0.97636 1.00964 1.21502 1.00945 0.92816 0.93180 1.22146 0.94831 1.00885 1.01588 1.22943 0.93726 0.94875 0.93538 1.67833 1.39933 1.03907 1.07574 1.22784 0.89281 0.94773 0.95363 0.92987 0.96395 0.96144 0.92504 0.92453 0.92620 0.92758 0.84025 0.84207 0.84277 0.84252 0.82434 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.10 -2.27 5.52 -26.73 -0.15 -2.42 16 11 C 0.05 0.87 5.36 37.16 0.20 1.07 16 12 O -0.37 -5.65 9.33 -35.23 -0.33 -5.98 16 13 C 0.13 1.42 2.41 -27.88 -0.07 1.35 16 14 H 0.10 1.06 7.22 -51.93 -0.37 0.68 16 15 C -0.04 -0.34 6.07 -4.04 -0.02 -0.37 16 16 N -0.01 -0.21 3.10 -10.61 -0.03 -0.24 16 17 O -0.16 -2.51 16.32 -29.46 -0.48 -2.99 16 18 O -0.15 -2.34 19.22 -29.46 -0.57 -2.91 16 19 C -0.15 -1.39 4.98 -104.48 -0.52 -1.91 16 20 C -0.06 -0.43 9.82 -39.28 -0.39 -0.82 16 21 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 22 C 0.11 0.85 11.18 -17.54 -0.20 0.65 16 23 N -0.48 -5.26 10.36 -13.25 -0.14 -5.39 16 24 C 0.13 1.44 10.53 -17.55 -0.18 1.26 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.05 1.03 5.08 -51.93 -0.26 0.76 16 32 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.14 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.16 1.75 7.78 -52.49 -0.41 1.34 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -33.88 325.23 -8.02 -41.90 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.81 Total: -3.68 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.28 Total: -16.07 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.57 Total: -32.18 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.38 Total: -11.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.88 -8.02 -41.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.152 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds