Wall clock time and date at job start Tue Mar 31 2020 01:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47004 * 300.00016 * 3 2 1 6 6 H 1.48502 * 109.46921 * 59.99746 * 3 2 1 7 7 C 1.37875 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.52997 * 109.47319 * 270.00076 * 13 12 11 16 16 N 1.46497 * 109.47195 * 64.99855 * 15 13 12 17 17 O 1.21803 * 119.99962 * 45.00383 * 16 15 13 18 18 O 1.21799 * 120.00854 * 225.00230 * 16 15 13 19 19 C 1.50699 * 109.46964 * 150.00106 * 13 12 11 20 20 C 1.38678 * 120.41936 * 219.72167 * 19 13 12 21 21 C 1.38627 * 118.42058 * 179.78589 * 20 19 13 22 22 C 1.38237 * 119.15863 * 0.50929 * 21 20 19 23 23 N 1.31851 * 120.76273 * 359.73082 * 22 21 20 24 24 C 1.31880 * 121.72861 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99861 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 27 27 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 28 28 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 29 29 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 30 30 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 31 31 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 32 32 H 1.09001 * 109.47630 * 185.00204 * 15 13 12 33 33 H 1.09004 * 109.47346 * 305.00335 * 15 13 12 34 34 H 1.07997 * 120.78778 * 0.02562 * 20 19 13 35 35 H 1.07996 * 120.41824 * 180.22034 * 21 20 19 36 36 H 1.07993 * 119.61526 * 179.75319 * 22 21 20 37 37 H 1.08002 * 119.62093 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 8 2.4088 -6.0733 0.0024 13 6 1.7942 -7.3634 0.0035 14 1 0.8343 -7.3090 -0.5101 15 6 1.5753 -7.8228 1.4463 16 7 0.6122 -6.9341 2.1011 17 8 -0.4072 -6.6071 1.5202 18 8 0.8307 -6.5222 3.2263 19 6 2.6887 -8.3465 -0.7066 20 6 2.1477 -9.3093 -1.5453 21 6 3.0091 -10.1899 -2.1811 22 6 4.3683 -10.0865 -1.9512 23 7 4.8471 -9.1613 -1.1430 24 6 4.0580 -8.3035 -0.5261 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6246 -2.5563 0.8919 28 1 2.8725 -3.6040 0.8910 29 1 2.8712 -3.6047 -0.8890 30 1 0.8531 -5.0450 -0.8877 31 1 0.8539 -5.0447 0.8922 32 1 1.1890 -8.8421 1.4485 33 1 2.5224 -7.7921 1.9851 34 1 1.0809 -9.3692 -1.7025 35 1 2.6229 -10.9500 -2.8439 36 1 5.0458 -10.7713 -2.4395 37 1 4.4869 -7.5590 0.1284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:26 Heat of formation + Delta-G solvation = -47.852790 kcal Electronic energy + Delta-G solvation = -21483.494186 eV Core-core repulsion = 18035.230308 eV Total energy + Delta-G solvation = -3448.263878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.41027 -41.36023 -39.48532 -37.58007 -36.24680 -34.91477 -33.44204 -32.97360 -31.91958 -28.85486 -27.27275 -25.13027 -24.62094 -24.28477 -22.77294 -22.08055 -19.92723 -19.69196 -19.15530 -18.66763 -18.10552 -17.88547 -16.82886 -16.72334 -16.46130 -16.40558 -15.39701 -15.17084 -14.77391 -14.60369 -14.30716 -14.08225 -13.95191 -13.62573 -13.06646 -12.88276 -12.80803 -12.68771 -12.48176 -12.40158 -12.34371 -12.00530 -11.87061 -11.56765 -11.23835 -10.99588 -10.85743 -10.58565 -10.48455 -10.14254 -8.22193 -6.34119 -0.70653 -0.06314 0.23208 0.66793 1.39732 1.40680 1.54109 2.14256 2.41524 2.63705 3.05739 3.10987 3.24027 3.42649 3.55858 3.67423 3.88904 3.95716 3.99995 4.00293 4.11833 4.28269 4.44017 4.50597 4.76240 4.77933 4.79326 5.07907 5.08445 5.11807 5.15399 5.43977 5.62684 5.64389 5.78910 5.81843 6.19978 6.30314 6.81149 6.93346 7.35244 8.90182 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.003821 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.925067 B = 7326.650789 C = 8264.736867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.094 4.094 11 C 0.065 3.935 12 O -0.383 6.383 13 C 0.129 3.871 14 H 0.109 0.891 15 C -0.031 4.031 16 N -0.009 5.009 17 O -0.179 6.179 18 O -0.185 6.185 19 C -0.151 4.151 20 C -0.056 4.056 21 C -0.163 4.163 22 C 0.098 3.902 23 N -0.516 5.516 24 C 0.115 3.885 25 H 0.265 0.735 26 H -0.001 1.001 27 H -0.008 1.008 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.187 0.813 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -25.775 -3.385 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.132 4.132 11 C -0.011 4.011 12 O -0.303 6.303 13 C 0.070 3.930 14 H 0.127 0.873 15 C -0.148 4.148 16 N 0.508 4.492 17 O -0.396 6.396 18 O -0.403 6.403 19 C -0.154 4.154 20 C -0.081 4.081 21 C -0.183 4.183 22 C -0.059 4.059 23 N -0.224 5.224 24 C -0.041 4.041 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.011 0.989 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.204 0.796 33 H 0.168 0.832 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.200 0.800 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.874 -26.061 -3.584 26.954 hybrid contribution -1.149 1.277 0.237 1.734 sum 4.725 -24.784 -3.347 25.451 Atomic orbital electron populations 1.70105 1.07785 1.27897 1.51258 1.25998 0.95829 1.03438 0.94486 0.85349 0.78949 0.78494 0.77950 1.18706 1.20027 1.20231 1.21634 0.93510 0.92140 1.51124 0.92233 1.18897 0.94126 0.92506 0.95265 1.21386 0.98623 0.91835 1.01366 1.22829 0.91511 0.86020 1.00731 1.87998 1.34327 1.13273 1.94672 1.20984 0.97929 0.83459 0.90650 0.87301 1.25576 0.95268 0.96758 0.97158 1.45067 1.02481 1.00623 1.01049 1.94564 1.17989 1.61735 1.65338 1.94599 1.82316 1.57635 1.05711 1.20250 0.94956 0.98166 1.02022 1.21865 1.02553 0.91823 0.91893 1.22534 0.93984 1.00827 1.00921 1.23487 0.95241 0.94386 0.92772 1.67800 1.40809 1.04982 1.08849 1.22672 0.90003 0.95250 0.96174 0.92585 0.98287 0.98925 0.92990 0.92187 0.92071 0.93811 0.79562 0.83181 0.81563 0.80732 0.79959 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.09 -4.18 5.52 30.59 0.17 -4.02 16 11 C 0.06 2.37 5.36 71.98 0.39 2.76 16 12 O -0.38 -11.46 9.33 -148.98 -1.39 -12.85 16 13 C 0.13 2.62 2.41 29.85 0.07 2.69 16 14 H 0.11 2.06 7.22 -2.39 -0.02 2.04 16 15 C -0.03 -0.54 6.07 86.38 0.52 -0.02 16 16 N -0.01 -0.26 3.10 -187.49 -0.58 -0.84 16 17 O -0.18 -5.53 16.32 18.88 0.31 -5.22 16 18 O -0.19 -6.00 19.22 18.89 0.36 -5.64 16 19 C -0.15 -2.58 4.98 -19.77 -0.10 -2.67 16 20 C -0.06 -0.63 9.82 22.47 0.22 -0.41 16 21 C -0.16 -1.52 10.11 22.36 0.23 -1.29 16 22 C 0.10 1.31 11.18 84.69 0.95 2.25 16 23 N -0.52 -10.60 10.36 -195.84 -2.03 -12.63 16 24 C 0.12 2.39 10.53 84.67 0.89 3.28 16 25 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 26 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 27 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 28 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 31 H 0.04 1.70 5.08 -2.39 -0.01 1.68 16 32 H 0.19 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.15 2.36 8.11 -2.39 -0.02 2.34 16 34 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 3.30 7.78 -2.91 -0.02 3.28 16 Total: -1.00 -75.56 325.23 4.23 -71.32 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.07 Total: 3.27 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.18 Total: -27.22 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.33 Total: -71.01 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.72 Total: -23.71 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.56 4.23 -71.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.469 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds