Wall clock time and date at job start Tue Mar 31 2020 01:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00390 * 2 1 4 4 H 1.48504 * 109.46715 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46904 * 29.99879 * 3 2 1 6 6 H 1.48503 * 109.47268 * 150.00118 * 3 2 1 7 7 C 1.37876 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00465 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47207 * 180.02562 * 11 10 9 13 13 C 1.42903 * 114.00100 * 175.10600 * 12 11 10 14 14 H 1.08997 * 109.47066 * 333.79658 * 13 12 11 15 15 C 1.52999 * 109.47294 * 93.79609 * 13 12 11 16 16 N 1.46504 * 109.47072 * 185.96311 * 15 13 12 17 17 O 1.21793 * 120.00109 * 46.95303 * 16 15 13 18 18 O 1.21805 * 119.99639 * 226.95874 * 16 15 13 19 19 C 1.50696 * 109.47030 * 213.79807 * 13 12 11 20 20 C 1.38681 * 120.41879 * 144.99762 * 19 13 12 21 21 C 1.38626 * 118.41985 * 180.02562 * 20 19 13 22 22 C 1.38225 * 119.16110 * 359.97438 * 21 20 19 23 23 N 1.31850 * 120.76828 * 0.02562 * 22 21 20 24 24 C 1.31890 * 121.72399 * 359.70928 * 23 22 21 25 25 H 0.97003 * 119.99938 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46504 * 60.00251 * 9 7 2 27 27 H 1.09001 * 109.46739 * 300.00418 * 9 7 2 28 28 H 1.08993 * 109.47757 * 59.99997 * 10 9 7 29 29 H 1.09001 * 109.47334 * 299.99718 * 10 9 7 30 30 H 1.09003 * 109.47563 * 59.99584 * 11 10 9 31 31 H 1.09001 * 109.46941 * 299.99560 * 11 10 9 32 32 H 1.08998 * 109.47103 * 305.96053 * 15 13 12 33 33 H 1.09000 * 109.46972 * 65.96667 * 15 13 12 34 34 H 1.08004 * 120.78796 * 359.97438 * 20 19 13 35 35 H 1.08000 * 120.41681 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.61836 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.62129 * 180.31371 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 8 6.0276 -3.9840 -0.0004 13 6 7.4477 -4.0985 -0.1117 14 1 7.8439 -3.2216 -0.6238 15 6 8.0629 -4.1941 1.2859 16 7 9.5238 -4.1681 1.1792 17 8 10.0683 -3.3364 0.4756 18 8 10.1938 -4.9784 1.7942 19 6 7.7917 -5.3373 -0.8978 20 6 8.8892 -5.3489 -1.7455 21 6 9.1672 -6.5105 -2.4491 22 6 8.3474 -7.6110 -2.2832 23 7 7.3120 -7.5640 -1.4683 24 6 7.0205 -6.4778 -0.7792 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1507 -0.8896 29 1 3.6584 -3.1503 0.8903 30 1 5.9148 -2.1228 0.8900 31 1 5.9148 -2.1231 -0.8899 32 1 7.7275 -3.3504 1.8889 33 1 7.7496 -5.1254 1.7578 34 1 9.5120 -4.4734 -1.8554 35 1 10.0141 -6.5553 -3.1178 36 1 8.5569 -8.5197 -2.8281 37 1 6.1670 -6.4785 -0.1175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:29 Heat of formation + Delta-G solvation = -28.738702 kcal Electronic energy + Delta-G solvation = -21322.118199 eV Core-core repulsion = 17874.683170 eV Total energy + Delta-G solvation = -3447.435029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.56623 -40.59346 -38.60788 -36.74340 -34.80294 -33.54216 -32.46905 -31.68550 -31.12817 -27.66396 -26.15685 -24.04413 -23.91553 -22.88378 -21.86119 -20.33920 -19.16313 -18.89518 -18.12860 -17.44820 -17.17966 -16.72364 -16.17563 -15.73697 -15.63175 -14.64877 -14.27444 -14.25208 -13.78566 -13.62866 -13.41417 -12.89347 -12.76411 -12.20707 -11.96979 -11.89612 -11.78614 -11.47904 -11.33425 -11.07433 -11.01698 -10.33092 -10.23438 -10.06454 -9.89138 -9.79358 -9.72858 -9.42638 -9.32380 -8.64033 -6.13660 -4.13215 0.26216 0.65818 0.91588 1.33100 3.16989 3.22635 3.30684 3.31731 3.35314 3.77642 3.86945 4.13540 4.27183 4.35411 4.50174 4.52348 4.64449 4.68734 4.89820 5.11892 5.18670 5.27056 5.31523 5.44342 5.70522 5.73043 5.79950 5.98333 6.20756 6.28424 6.32140 6.66311 6.85449 7.12868 7.22837 7.30090 7.63964 7.66391 8.42759 8.90739 9.47423 10.99604 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.003624 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.045704 B = 7724.640535 C = 8522.714317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.100 4.100 11 C 0.052 3.948 12 O -0.359 6.359 13 C 0.135 3.865 14 H 0.101 0.899 15 C -0.037 4.037 16 N -0.008 5.008 17 O -0.163 6.163 18 O -0.159 6.159 19 C -0.169 4.169 20 C -0.060 4.060 21 C -0.173 4.173 22 C 0.108 3.892 23 N -0.484 5.484 24 C 0.137 3.863 25 H 0.264 0.736 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.537 -10.674 -1.472 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.023 4.023 12 O -0.276 6.276 13 C 0.074 3.926 14 H 0.119 0.881 15 C -0.155 4.155 16 N 0.513 4.487 17 O -0.382 6.382 18 O -0.379 6.379 19 C -0.171 4.171 20 C -0.086 4.086 21 C -0.192 4.192 22 C -0.049 4.049 23 N -0.193 5.193 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 18.892 -11.467 -1.317 22.139 hybrid contribution 1.205 1.997 -0.064 2.333 sum 20.097 -9.471 -1.381 22.260 Atomic orbital electron populations 1.69906 1.06304 1.27028 1.50644 1.25027 0.94755 0.99179 0.94447 0.86779 0.80270 0.83632 0.78576 1.20191 1.21235 1.19120 1.21060 0.89097 0.94664 1.51362 0.90844 1.19519 0.97607 0.91195 0.96442 1.21496 0.88870 1.00612 1.02782 1.23166 0.98228 0.80669 1.00275 1.88060 1.16176 1.29599 1.93811 1.20666 0.84959 0.97367 0.89579 0.88095 1.25203 0.76182 1.10133 1.03957 1.44429 1.06184 0.99229 0.98844 1.94543 1.75568 1.31901 1.36217 1.94584 1.65509 1.33991 1.43813 1.20721 0.98577 0.96505 1.01285 1.21596 0.95092 0.99006 0.92894 1.22142 1.01789 0.93972 1.01332 1.22939 0.89861 0.98160 0.93962 1.67824 1.17119 1.27712 1.06601 1.22732 0.97167 0.86946 0.95182 0.92585 0.96477 0.96858 0.91599 0.91638 0.93199 0.92654 0.83590 0.84165 0.84139 0.84205 0.82383 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.10 -1.82 5.52 -26.73 -0.15 -1.97 16 11 C 0.05 0.72 5.81 37.16 0.22 0.94 16 12 O -0.36 -4.50 9.16 -35.23 -0.32 -4.82 16 13 C 0.13 1.37 2.34 -27.89 -0.07 1.31 16 14 H 0.10 0.98 7.12 -51.93 -0.37 0.61 16 15 C -0.04 -0.33 6.16 -4.04 -0.02 -0.35 16 16 N -0.01 -0.08 3.87 -10.61 -0.04 -0.12 16 17 O -0.16 -1.90 18.09 -29.46 -0.53 -2.43 16 18 O -0.16 -1.95 19.22 -29.46 -0.57 -2.52 16 19 C -0.17 -1.82 4.78 -104.48 -0.50 -2.32 16 20 C -0.06 -0.58 9.75 -39.27 -0.38 -0.97 16 21 C -0.17 -1.48 10.11 -39.44 -0.40 -1.88 16 22 C 0.11 1.02 11.18 -17.55 -0.20 0.82 16 23 N -0.48 -5.83 10.36 -13.25 -0.14 -5.96 16 24 C 0.14 1.59 10.52 -17.55 -0.18 1.41 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.73 7.98 -51.93 -0.41 0.32 16 32 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.14 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.14 1.20 7.77 -52.48 -0.41 0.79 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.16 1.82 7.64 -52.49 -0.40 1.41 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -31.85 326.60 -7.70 -39.55 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.90 Total: -2.09 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.23 Total: -16.35 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.60 Total: -32.59 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.42 Total: -9.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.85 -7.70 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.816 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds