Wall clock time and date at job start Tue Mar 31 2020 01:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00390 * 2 1 4 4 H 1.48504 * 109.46715 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46904 * 29.99879 * 3 2 1 6 6 H 1.48503 * 109.47268 * 150.00118 * 3 2 1 7 7 C 1.37876 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00465 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47207 * 180.02562 * 11 10 9 13 13 C 1.42903 * 114.00100 * 175.10600 * 12 11 10 14 14 H 1.08997 * 109.47066 * 333.79658 * 13 12 11 15 15 C 1.52999 * 109.47294 * 93.79609 * 13 12 11 16 16 N 1.46504 * 109.47072 * 185.96311 * 15 13 12 17 17 O 1.21793 * 120.00109 * 46.95303 * 16 15 13 18 18 O 1.21805 * 119.99639 * 226.95874 * 16 15 13 19 19 C 1.50696 * 109.47030 * 213.79807 * 13 12 11 20 20 C 1.38681 * 120.41879 * 144.99762 * 19 13 12 21 21 C 1.38626 * 118.41985 * 180.02562 * 20 19 13 22 22 C 1.38225 * 119.16110 * 359.97438 * 21 20 19 23 23 N 1.31850 * 120.76828 * 0.02562 * 22 21 20 24 24 C 1.31890 * 121.72399 * 359.70928 * 23 22 21 25 25 H 0.97003 * 119.99938 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46504 * 60.00251 * 9 7 2 27 27 H 1.09001 * 109.46739 * 300.00418 * 9 7 2 28 28 H 1.08993 * 109.47757 * 59.99997 * 10 9 7 29 29 H 1.09001 * 109.47334 * 299.99718 * 10 9 7 30 30 H 1.09003 * 109.47563 * 59.99584 * 11 10 9 31 31 H 1.09001 * 109.46941 * 299.99560 * 11 10 9 32 32 H 1.08998 * 109.47103 * 305.96053 * 15 13 12 33 33 H 1.09000 * 109.46972 * 65.96667 * 15 13 12 34 34 H 1.08004 * 120.78796 * 359.97438 * 20 19 13 35 35 H 1.08000 * 120.41681 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.61836 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.62129 * 180.31371 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 8 6.0276 -3.9840 -0.0004 13 6 7.4477 -4.0985 -0.1117 14 1 7.8439 -3.2216 -0.6238 15 6 8.0629 -4.1941 1.2859 16 7 9.5238 -4.1681 1.1792 17 8 10.0683 -3.3364 0.4756 18 8 10.1938 -4.9784 1.7942 19 6 7.7917 -5.3373 -0.8978 20 6 8.8892 -5.3489 -1.7455 21 6 9.1672 -6.5105 -2.4491 22 6 8.3474 -7.6110 -2.2832 23 7 7.3120 -7.5640 -1.4683 24 6 7.0205 -6.4778 -0.7792 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1507 -0.8896 29 1 3.6584 -3.1503 0.8903 30 1 5.9148 -2.1228 0.8900 31 1 5.9148 -2.1231 -0.8899 32 1 7.7275 -3.3504 1.8889 33 1 7.7496 -5.1254 1.7578 34 1 9.5120 -4.4734 -1.8554 35 1 10.0141 -6.5553 -3.1178 36 1 8.5569 -8.5197 -2.8281 37 1 6.1670 -6.4785 -0.1175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:29 Heat of formation + Delta-G solvation = -48.305764 kcal Electronic energy + Delta-G solvation = -21322.966690 eV Core-core repulsion = 17874.683170 eV Total energy + Delta-G solvation = -3448.283521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.37994 -41.36139 -39.54360 -37.59578 -36.20693 -34.87463 -33.59911 -33.08665 -31.88203 -29.22188 -27.12604 -24.95042 -24.76393 -24.25990 -22.67242 -21.93832 -19.97010 -19.68964 -19.00955 -18.93134 -18.15533 -17.86603 -16.99185 -16.75596 -16.64915 -16.17785 -15.46603 -15.11621 -14.85258 -14.73336 -14.48664 -14.14407 -13.98704 -13.64740 -13.19505 -12.83166 -12.71444 -12.66822 -12.38275 -12.33936 -12.21554 -11.90630 -11.74629 -11.68583 -11.35665 -11.01858 -10.87189 -10.78048 -10.52571 -10.17410 -8.30614 -6.36305 -0.62379 -0.08674 0.17222 0.55034 1.37010 1.38890 1.50250 2.27736 2.35537 2.60154 3.04935 3.06169 3.07843 3.44955 3.56936 3.75204 3.87051 3.91584 3.96960 4.11253 4.15867 4.25732 4.45207 4.49169 4.68481 4.74278 4.81228 4.98969 5.01890 5.07317 5.14736 5.42553 5.52710 5.60080 5.62477 5.89499 6.26199 6.40223 6.72671 6.88305 7.28540 8.86415 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.003624 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.045704 B = 7724.640535 C = 8522.714317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.538 4.538 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.095 4.095 11 C 0.062 3.938 12 O -0.369 6.369 13 C 0.139 3.861 14 H 0.113 0.887 15 C -0.033 4.033 16 N -0.001 5.001 17 O -0.159 6.159 18 O -0.191 6.191 19 C -0.177 4.177 20 C -0.069 4.069 21 C -0.166 4.166 22 C 0.098 3.902 23 N -0.514 5.514 24 C 0.116 3.884 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.025 0.975 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.170 0.830 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.503 -9.504 -1.857 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.576 4.576 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.133 4.133 11 C -0.014 4.014 12 O -0.287 6.287 13 C 0.079 3.921 14 H 0.131 0.869 15 C -0.151 4.151 16 N 0.517 4.483 17 O -0.382 6.382 18 O -0.405 6.405 19 C -0.179 4.179 20 C -0.095 4.095 21 C -0.185 4.185 22 C -0.059 4.059 23 N -0.222 5.222 24 C -0.040 4.040 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.187 0.813 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 21.890 -10.362 -1.666 24.276 hybrid contribution 0.227 1.516 -0.018 1.533 sum 22.117 -8.846 -1.684 23.880 Atomic orbital electron populations 1.70081 1.08551 1.28281 1.52493 1.26099 0.95651 1.03842 0.93974 0.85601 0.79687 0.77702 0.79295 1.19131 1.21257 1.16119 1.21484 0.92288 0.93050 1.50740 0.95395 1.19448 0.93789 0.94041 0.97285 1.21266 0.92626 0.97819 1.01612 1.22892 0.94764 0.81626 1.02089 1.88028 1.17861 1.28744 1.94042 1.20704 0.83537 0.97595 0.90312 0.86944 1.25279 0.74654 1.11630 1.03499 1.44630 1.06745 0.98650 0.98243 1.94528 1.76120 1.31683 1.35874 1.94598 1.66161 1.34773 1.44929 1.20802 0.98970 0.96321 1.01814 1.21871 0.94928 1.00002 0.92711 1.22517 1.02107 0.93037 1.00862 1.23463 0.89241 0.99657 0.93512 1.67791 1.18563 1.28240 1.07654 1.22734 0.97712 0.87631 0.95914 0.92470 0.95178 0.95664 0.93269 0.92590 0.90822 0.91383 0.81323 0.83404 0.82836 0.81048 0.79772 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.00 0.05 5.47 84.65 0.46 0.52 16 3 Si 0.95 42.39 27.47 68.60 1.88 44.27 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.54 -30.34 9.66 25.60 0.25 -30.10 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.10 -3.40 5.52 30.59 0.17 -3.23 16 11 C 0.06 1.54 5.81 71.98 0.42 1.96 16 12 O -0.37 -8.54 9.16 -148.98 -1.37 -9.90 16 13 C 0.14 2.49 2.34 29.85 0.07 2.56 16 14 H 0.11 1.80 7.12 -2.39 -0.02 1.78 16 15 C -0.03 -0.51 6.16 86.38 0.53 0.02 16 16 N 0.00 -0.02 3.87 -187.48 -0.73 -0.75 16 17 O -0.16 -3.27 18.09 18.89 0.34 -2.93 16 18 O -0.19 -4.45 19.22 18.88 0.36 -4.09 16 19 C -0.18 -3.54 4.78 -19.77 -0.09 -3.64 16 20 C -0.07 -1.19 9.75 22.47 0.22 -0.97 16 21 C -0.17 -2.43 10.11 22.36 0.23 -2.20 16 22 C 0.10 1.69 11.18 84.69 0.95 2.64 16 23 N -0.51 -12.13 10.36 -195.84 -2.03 -14.16 16 24 C 0.12 2.69 10.52 84.67 0.89 3.58 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 27 H 0.03 1.03 7.57 -2.39 -0.02 1.01 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.55 7.98 -2.39 -0.02 1.53 16 32 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.15 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.15 2.18 7.77 -2.91 -0.02 2.16 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.16 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -70.93 326.60 3.99 -66.94 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.01 Total: 8.84 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.21 Total: -29.10 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.46 Total: -74.04 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.66 Total: -16.92 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Total: -70.93 3.99 -66.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.634 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds