Wall clock time and date at job start Tue Mar 31 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00033 * 2 1 4 4 O 1.20822 * 119.99604 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99779 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47260 * 59.99520 * 5 3 2 7 7 C 1.53003 * 109.47064 * 299.99473 * 5 3 2 8 8 C 1.52998 * 109.47088 * 175.00242 * 7 5 3 9 9 O 1.42897 * 109.47108 * 180.02562 * 8 7 5 10 10 O 1.42899 * 109.46956 * 180.02562 * 5 3 2 11 11 C 1.35679 * 117.00071 * 218.66773 * 10 5 3 12 12 C 1.39318 * 119.81182 * 354.61899 * 11 10 5 13 13 C 1.36433 * 120.18088 * 180.02562 * 12 11 10 14 14 C 1.40839 * 119.81362 * 0.02562 * 13 12 11 15 15 C 1.41208 * 120.18119 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99788 * 335.10515 * 15 14 13 17 17 C 1.39887 * 120.00525 * 155.10989 * 15 14 13 18 18 N 1.30887 * 119.99327 * 342.52192 * 17 15 14 19 19 Si 1.86796 * 120.00621 * 162.52819 * 17 15 14 20 20 H 1.48498 * 109.47103 * 94.85737 * 19 17 15 21 21 H 1.48501 * 109.47257 * 214.85527 * 19 17 15 22 22 H 1.48500 * 109.46788 * 334.85493 * 19 17 15 23 23 C 1.40831 * 119.64085 * 0.25409 * 14 13 12 24 24 C 1.36440 * 119.81243 * 359.46090 * 23 14 13 25 25 H 1.09003 * 109.47212 * 60.00018 * 1 2 3 26 26 H 1.08993 * 109.47516 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47154 * 300.00066 * 1 2 3 28 28 H 1.09000 * 109.47512 * 295.00662 * 7 5 3 29 29 H 1.09004 * 109.46649 * 55.00101 * 7 5 3 30 30 H 1.08999 * 109.47063 * 299.99808 * 8 7 5 31 31 H 1.08995 * 109.46920 * 60.00259 * 8 7 5 32 32 H 0.96698 * 114.00220 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.90768 * 0.02615 * 12 11 10 34 34 H 1.07998 * 120.09709 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99846 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.09464 * 179.72895 * 23 14 13 37 37 H 1.08001 * 119.91176 * 180.28196 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5811 1.2484 8 6 5.6423 0.5512 1.1865 9 8 6.1536 -0.0972 2.3527 10 8 3.9715 2.6452 0.0001 11 6 5.0510 2.9687 -0.7554 12 6 5.7749 1.9647 -1.3948 13 6 6.8620 2.2815 -2.1560 14 6 7.2519 3.6278 -2.2939 15 6 8.3760 3.9644 -3.0794 16 1 9.1586 3.2379 -3.2416 17 6 8.4762 5.2388 -3.6475 18 7 7.4127 5.9947 -3.7506 19 14 10.1277 5.8618 -4.2589 20 1 10.2523 5.5882 -5.7132 21 1 10.2242 7.3243 -4.0204 22 1 11.2193 5.1681 -3.5293 23 6 6.5181 4.6360 -1.6394 24 6 5.4300 4.3029 -0.8866 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7967 1.1279 2.1363 29 1 3.7320 -0.4389 1.2943 30 1 5.9594 0.0042 0.2987 31 1 6.0240 1.5711 1.1407 32 1 7.1186 -0.1526 2.3808 33 1 5.4748 0.9328 -1.2877 34 1 7.4224 1.5021 -2.6508 35 1 7.4820 6.8783 -4.1448 36 1 6.8132 5.6703 -1.7366 37 1 4.8634 5.0752 -0.3877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218217500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:51 Heat of formation + Delta-G solvation = -149.110301 kcal Electronic energy + Delta-G solvation = -21805.557439 eV Core-core repulsion = 18320.609955 eV Total energy + Delta-G solvation = -3484.947485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66099 -39.13996 -36.98821 -36.60091 -36.08065 -33.51274 -32.44280 -29.70724 -29.28226 -28.31131 -26.36980 -24.75131 -22.37014 -21.80894 -20.88265 -20.00900 -18.14081 -17.46297 -17.28539 -16.96447 -16.67820 -16.11194 -15.26313 -15.22925 -14.46447 -14.20115 -14.05662 -13.81250 -13.24154 -13.08845 -13.00863 -12.50140 -12.29488 -12.19461 -11.92941 -11.65635 -11.39978 -11.21569 -11.14313 -10.96232 -10.85486 -10.72027 -10.31425 -10.00255 -9.93993 -9.77823 -9.36923 -9.12122 -7.74869 -7.14220 -6.80428 -4.34886 2.18529 2.37963 2.71008 2.84303 3.04748 3.07739 3.14745 3.89214 4.05507 4.20700 4.52625 4.76959 4.91133 5.00011 5.06676 5.12575 5.27397 5.39062 5.49932 5.57241 5.68912 5.87258 6.05589 6.11021 6.13639 6.28702 6.61489 6.87191 7.00308 7.08876 7.32543 7.44899 7.65219 7.70131 7.76899 7.91639 8.10478 8.29877 8.54160 8.81019 8.87670 10.14042 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004177 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.563996 B = 6701.314493 C = 7410.750411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.461 3.539 4 O -0.483 6.483 5 C 0.100 3.900 6 H 0.114 0.886 7 C -0.128 4.128 8 C 0.074 3.926 9 O -0.579 6.579 10 O -0.294 6.294 11 C -0.019 4.019 12 C -0.170 4.170 13 C -0.197 4.197 14 C 0.092 3.908 15 C -0.461 4.461 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.134 4.134 24 C -0.110 4.110 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.381 0.619 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.281 0.719 36 H 0.126 0.874 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 -9.607 5.705 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.302 3.698 4 O -0.368 6.368 5 C 0.041 3.959 6 H 0.131 0.869 7 C -0.166 4.166 8 C -0.003 4.003 9 O -0.385 6.385 10 O -0.210 6.210 11 C -0.062 4.062 12 C -0.189 4.189 13 C -0.217 4.217 14 C 0.090 3.910 15 C -0.491 4.491 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.153 4.153 24 C -0.129 4.129 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.228 0.772 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.413 -8.969 5.851 12.482 hybrid contribution 1.017 0.318 -0.740 1.297 sum -5.396 -8.651 5.111 11.405 Atomic orbital electron populations 1.23268 0.76262 1.03604 1.02670 1.86485 1.23418 1.33110 1.84518 1.23631 0.91548 0.81601 0.73000 1.90681 1.66575 1.36253 1.43300 1.21412 0.86866 0.86314 1.01279 0.86891 1.21870 0.95746 1.01489 0.97468 1.22360 0.93221 0.97697 0.87061 1.86362 1.26400 1.81690 1.44028 1.86010 1.46557 1.22630 1.65790 1.18598 0.91007 0.94036 1.02557 1.20456 0.99200 0.96128 1.03101 1.20542 0.99314 0.96567 1.05265 1.17612 0.92307 0.90580 0.90535 1.19489 1.04807 0.97718 1.27080 0.90421 1.25901 0.97766 0.96424 0.94180 1.69832 1.29241 1.09859 1.33126 0.86310 0.82475 0.78570 0.79459 1.19617 1.20019 1.18441 1.20981 0.96297 1.00364 0.97675 1.19846 0.99086 0.91921 1.02035 0.91828 0.88006 0.91878 0.89958 0.89192 0.93051 0.91592 0.77200 0.88340 0.88530 0.90778 0.85601 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.73 10.37 -39.26 -0.41 -5.14 16 3 C 0.46 7.54 7.33 36.01 0.26 7.81 16 4 O -0.48 -9.43 16.25 -25.47 -0.41 -9.85 16 5 C 0.10 1.65 2.65 -27.88 -0.07 1.57 16 6 H 0.11 1.75 5.43 -51.93 -0.28 1.46 16 7 C -0.13 -1.83 5.25 -26.73 -0.14 -1.97 16 8 C 0.07 1.07 5.60 37.16 0.21 1.28 16 9 O -0.58 -7.77 13.66 -35.23 -0.48 -8.26 16 10 O -0.29 -6.04 9.11 -38.69 -0.35 -6.39 16 11 C -0.02 -0.43 5.66 -38.78 -0.22 -0.65 16 12 C -0.17 -3.53 7.22 -39.83 -0.29 -3.82 16 13 C -0.20 -4.52 9.74 -39.25 -0.38 -4.90 16 14 C 0.09 2.35 5.57 -106.81 -0.59 1.75 16 15 C -0.46 -11.76 9.04 -37.84 -0.34 -12.10 16 16 H 0.08 1.89 7.90 -52.48 -0.41 1.48 16 17 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.79 -20.10 10.97 55.54 0.61 -19.49 16 19 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.13 -3.38 8.64 -39.25 -0.34 -3.71 16 24 C -0.11 -2.60 9.92 -39.83 -0.40 -2.99 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.12 7.99 -51.93 -0.42 0.70 16 30 H 0.05 0.69 6.67 -51.93 -0.35 0.35 16 31 H 0.07 1.10 6.47 -51.93 -0.34 0.77 16 32 H 0.38 3.51 9.12 45.56 0.42 3.92 16 33 H 0.10 1.72 4.21 -52.49 -0.22 1.50 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 36 H 0.13 3.27 6.19 -52.49 -0.32 2.95 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -30.21 314.54 -6.26 -36.46 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.59 Total: 9.41 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.33 Total: -14.58 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.65 Total: -29.63 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.21 -6.26 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218217500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.646 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds