Wall clock time and date at job start Tue Mar 31 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00033 * 2 1 4 4 O 1.20822 * 119.99604 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99779 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47260 * 59.99520 * 5 3 2 7 7 C 1.53003 * 109.47064 * 299.99473 * 5 3 2 8 8 C 1.52998 * 109.47088 * 175.00242 * 7 5 3 9 9 O 1.42897 * 109.47108 * 180.02562 * 8 7 5 10 10 O 1.42899 * 109.46956 * 180.02562 * 5 3 2 11 11 C 1.35679 * 117.00071 * 218.66773 * 10 5 3 12 12 C 1.39318 * 119.81182 * 354.61899 * 11 10 5 13 13 C 1.36433 * 120.18088 * 180.02562 * 12 11 10 14 14 C 1.40839 * 119.81362 * 0.02562 * 13 12 11 15 15 C 1.41208 * 120.18119 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99788 * 335.10515 * 15 14 13 17 17 C 1.39887 * 120.00525 * 155.10989 * 15 14 13 18 18 N 1.30887 * 119.99327 * 342.52192 * 17 15 14 19 19 Si 1.86796 * 120.00621 * 162.52819 * 17 15 14 20 20 H 1.48498 * 109.47103 * 94.85737 * 19 17 15 21 21 H 1.48501 * 109.47257 * 214.85527 * 19 17 15 22 22 H 1.48500 * 109.46788 * 334.85493 * 19 17 15 23 23 C 1.40831 * 119.64085 * 0.25409 * 14 13 12 24 24 C 1.36440 * 119.81243 * 359.46090 * 23 14 13 25 25 H 1.09003 * 109.47212 * 60.00018 * 1 2 3 26 26 H 1.08993 * 109.47516 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47154 * 300.00066 * 1 2 3 28 28 H 1.09000 * 109.47512 * 295.00662 * 7 5 3 29 29 H 1.09004 * 109.46649 * 55.00101 * 7 5 3 30 30 H 1.08999 * 109.47063 * 299.99808 * 8 7 5 31 31 H 1.08995 * 109.46920 * 60.00259 * 8 7 5 32 32 H 0.96698 * 114.00220 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.90768 * 0.02615 * 12 11 10 34 34 H 1.07998 * 120.09709 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99846 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.09464 * 179.72895 * 23 14 13 37 37 H 1.08001 * 119.91176 * 180.28196 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5811 1.2484 8 6 5.6423 0.5512 1.1865 9 8 6.1536 -0.0972 2.3527 10 8 3.9715 2.6452 0.0001 11 6 5.0510 2.9687 -0.7554 12 6 5.7749 1.9647 -1.3948 13 6 6.8620 2.2815 -2.1560 14 6 7.2519 3.6278 -2.2939 15 6 8.3760 3.9644 -3.0794 16 1 9.1586 3.2379 -3.2416 17 6 8.4762 5.2388 -3.6475 18 7 7.4127 5.9947 -3.7506 19 14 10.1277 5.8618 -4.2589 20 1 10.2523 5.5882 -5.7132 21 1 10.2242 7.3243 -4.0204 22 1 11.2193 5.1681 -3.5293 23 6 6.5181 4.6360 -1.6394 24 6 5.4300 4.3029 -0.8866 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7967 1.1279 2.1363 29 1 3.7320 -0.4389 1.2943 30 1 5.9594 0.0042 0.2987 31 1 6.0240 1.5711 1.1407 32 1 7.1186 -0.1526 2.3808 33 1 5.4748 0.9328 -1.2877 34 1 7.4224 1.5021 -2.6508 35 1 7.4820 6.8783 -4.1448 36 1 6.8132 5.6703 -1.7366 37 1 4.8634 5.0752 -0.3877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218217500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:50 Heat of formation + Delta-G solvation = -168.656106 kcal Electronic energy + Delta-G solvation = -21806.405009 eV Core-core repulsion = 18320.609955 eV Total energy + Delta-G solvation = -3485.795054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96811 -40.65130 -38.53465 -37.77256 -37.41703 -35.28454 -33.77530 -31.49286 -31.05361 -29.34171 -27.60448 -26.44106 -23.82153 -23.09602 -22.65371 -21.46800 -19.60778 -19.07003 -18.68393 -18.22230 -17.91717 -17.28606 -17.01381 -16.53044 -15.91073 -15.72748 -15.45044 -15.07607 -14.78452 -14.35591 -14.32737 -14.09258 -13.97606 -13.52364 -13.27490 -13.03450 -12.91397 -12.77488 -12.57864 -12.39123 -12.26320 -11.90264 -11.87343 -11.60704 -11.49425 -11.16457 -10.91209 -10.83016 -9.57079 -8.95866 -8.60550 -6.24035 0.89534 0.91785 1.01461 1.24564 1.41455 1.51021 1.56789 2.22975 2.62121 2.72658 3.12472 3.55253 3.69004 3.71432 3.96118 4.10388 4.26809 4.28651 4.30570 4.32784 4.38973 4.57866 4.68164 4.77642 4.94756 4.98573 5.06077 5.15377 5.19535 5.27724 5.53599 5.61881 5.84025 6.05360 6.23242 6.47215 6.58565 6.74670 6.84579 6.94680 7.04776 8.36114 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004177 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.563996 B = 6701.314493 C = 7410.750411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.468 3.532 4 O -0.523 6.523 5 C 0.094 3.906 6 H 0.128 0.872 7 C -0.121 4.121 8 C 0.078 3.922 9 O -0.586 6.586 10 O -0.312 6.312 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.200 4.200 14 C 0.061 3.939 15 C -0.495 4.495 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.831 5.831 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.153 4.153 24 C -0.128 4.128 25 H 0.060 0.940 26 H 0.143 0.857 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.399 0.601 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.287 0.713 36 H 0.108 0.892 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -11.961 5.845 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.310 3.690 4 O -0.411 6.411 5 C 0.035 3.965 6 H 0.146 0.854 7 C -0.158 4.158 8 C 0.001 3.999 9 O -0.395 6.395 10 O -0.228 6.228 11 C -0.051 4.051 12 C -0.177 4.177 13 C -0.220 4.220 14 C 0.058 3.942 15 C -0.525 4.525 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.458 5.458 19 Si 0.801 3.199 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.173 4.173 24 C -0.147 4.147 25 H 0.079 0.921 26 H 0.161 0.839 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.249 0.751 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.440 -11.367 6.007 14.380 hybrid contribution 0.841 0.884 -0.667 1.390 sum -5.599 -10.483 5.340 13.030 Atomic orbital electron populations 1.23671 0.74031 1.06293 1.02657 1.86472 1.25445 1.30978 1.83619 1.23570 0.91438 0.81935 0.72035 1.90675 1.67348 1.37711 1.45399 1.21715 0.87398 0.84361 1.02980 0.85446 1.21832 0.95765 1.02408 0.95821 1.22217 0.93159 0.96473 0.88071 1.86322 1.28312 1.81262 1.43573 1.85976 1.45880 1.25566 1.65382 1.18614 0.91185 0.93667 1.01594 1.20725 0.97828 0.97777 1.01359 1.20810 0.99883 0.95972 1.05288 1.17953 0.93038 0.91870 0.91307 1.19762 1.05423 0.98940 1.28328 0.90115 1.26742 1.01202 0.96165 0.93952 1.69900 1.31300 1.10420 1.34155 0.85214 0.77713 0.77956 0.78977 1.18888 1.19503 1.18001 1.20859 0.97496 0.99750 0.99154 1.19965 0.99069 0.93315 1.02363 0.92099 0.83926 0.91785 0.90839 0.86520 0.91613 0.94384 0.75095 0.84433 0.86849 0.90260 0.87459 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.22 10.37 -51.43 -0.53 -8.75 16 3 C 0.47 14.49 7.33 71.24 0.52 15.01 16 4 O -0.52 -20.12 16.25 28.41 0.46 -19.66 16 5 C 0.09 2.88 2.65 29.85 0.08 2.95 16 6 H 0.13 3.52 5.43 -2.39 -0.01 3.51 16 7 C -0.12 -3.13 5.25 30.59 0.16 -2.97 16 8 C 0.08 2.07 5.60 71.98 0.40 2.47 16 9 O -0.59 -14.19 13.66 -148.98 -2.03 -16.23 16 10 O -0.31 -12.60 9.11 -70.89 -0.65 -13.25 16 11 C -0.01 -0.33 5.66 22.79 0.13 -0.20 16 12 C -0.16 -6.32 7.22 22.11 0.16 -6.16 16 13 C -0.20 -9.02 9.74 22.48 0.22 -8.80 16 14 C 0.06 3.15 5.57 -21.28 -0.12 3.03 16 15 C -0.49 -25.73 9.04 23.40 0.21 -25.52 16 16 H 0.08 3.98 7.90 -2.91 -0.02 3.95 16 17 C 0.03 1.66 5.14 85.23 0.44 2.10 16 18 N -0.83 -43.36 10.97 21.82 0.24 -43.12 16 19 Si 0.98 37.46 29.59 68.60 2.03 39.49 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 C -0.15 -8.03 8.64 22.48 0.19 -7.84 16 24 C -0.13 -6.24 9.92 22.11 0.22 -6.02 16 25 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 26 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.12 2.44 7.99 -2.38 -0.02 2.42 16 30 H 0.07 1.54 6.67 -2.39 -0.02 1.52 16 31 H 0.04 1.22 6.47 -2.39 -0.02 1.20 16 32 H 0.40 6.34 9.12 -74.06 -0.68 5.66 16 33 H 0.14 4.31 4.21 -2.91 -0.01 4.30 16 34 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 36 H 0.11 5.92 6.19 -2.91 -0.02 5.90 16 37 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -66.66 314.54 3.77 -62.90 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.43 Total: 28.92 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 3.81 Total: -30.30 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.24 Total: -43.12 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -2.75 Total: -57.89 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -66.66 3.77 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218217500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.757 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds