Wall clock time and date at job start Tue Mar 31 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.84892 * 180.27944 * 7 2 1 9 9 C 1.53652 * 108.31082 * 231.38027 * 8 7 2 10 10 C 1.52959 * 109.32660 * 305.14051 * 9 8 7 11 11 H 1.08997 * 109.35516 * 303.65524 * 10 9 8 12 12 N 1.46499 * 109.41821 * 183.83330 * 10 9 8 13 13 C 1.34779 * 119.99863 * 84.64317 * 12 10 9 14 14 O 1.21277 * 120.00027 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.99622 * 180.02562 * 13 12 10 16 16 H 1.08998 * 109.47402 * 40.00441 * 15 13 12 17 17 N 1.46902 * 109.47021 * 160.00390 * 15 13 12 18 18 C 1.53001 * 109.47217 * 280.00061 * 15 13 12 19 19 F 1.39901 * 109.46819 * 60.00306 * 18 15 13 20 20 F 1.39902 * 109.47339 * 180.02562 * 18 15 13 21 21 F 1.39900 * 109.47188 * 300.00570 * 18 15 13 22 22 C 1.52964 * 109.81574 * 63.72648 * 10 9 8 23 23 C 1.51267 * 120.84902 * 359.97438 * 7 2 1 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62493 * 351.04166 * 8 7 2 26 26 H 1.09007 * 109.62173 * 111.60914 * 8 7 2 27 27 H 1.09001 * 109.42132 * 185.24849 * 9 8 7 28 28 H 1.08999 * 109.63083 * 65.15653 * 9 8 7 29 29 H 0.97007 * 119.99832 * 264.65190 * 12 10 9 30 30 H 1.00900 * 110.99805 * 296.04383 * 17 15 13 31 31 H 1.00899 * 110.99932 * 59.99261 * 17 15 13 32 32 H 1.09002 * 109.47682 * 176.42377 * 22 10 9 33 33 H 1.08996 * 109.49475 * 56.39319 * 22 10 9 34 34 H 1.09001 * 109.63015 * 248.39200 * 23 7 2 35 35 H 1.09007 * 109.62669 * 8.96626 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 6 3.5171 -1.2166 0.0058 9 6 3.9911 -2.1308 -1.1346 10 6 3.3403 -3.5068 -0.9840 11 1 3.5740 -3.9112 0.0008 12 7 3.8605 -4.4072 -2.0159 13 6 5.0180 -5.0672 -1.8132 14 8 5.6286 -4.9162 -0.7763 15 6 5.5533 -5.9930 -2.8750 16 1 5.3970 -5.5479 -3.8576 17 7 6.9902 -6.2081 -2.6579 18 6 4.8199 -7.3337 -2.7998 19 9 3.4515 -7.1288 -3.0066 20 9 5.3174 -8.1933 -3.7851 21 9 5.0206 -7.9049 -1.5386 22 6 1.8232 -3.3823 -1.1356 23 6 1.2677 -2.5152 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.8989 -0.2074 -0.1496 26 1 3.8734 -1.6028 0.9608 27 1 5.0752 -2.2345 -1.0892 28 1 3.7070 -1.6974 -2.0935 29 1 3.3719 -4.5282 -2.8452 30 1 7.5052 -5.3472 -2.7664 31 1 7.1615 -6.6202 -1.7529 32 1 1.3710 -4.3731 -1.0909 33 1 1.5903 -2.9194 -2.0945 34 1 1.4199 -3.0194 0.9538 35 1 0.2036 -2.3409 -0.1601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:00 Heat of formation + Delta-G solvation = -209.787150 kcal Electronic energy + Delta-G solvation = -22967.782724 eV Core-core repulsion = 18970.640105 eV Total energy + Delta-G solvation = -3997.142619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.30714 -47.82917 -47.76003 -40.03877 -37.10952 -34.82712 -33.94993 -31.70804 -29.76175 -28.62856 -27.14343 -24.10546 -22.16257 -21.59538 -20.52555 -19.69161 -18.92529 -18.67868 -18.17202 -17.15672 -16.22759 -15.95796 -15.45658 -14.65782 -14.61457 -14.58887 -14.44444 -14.27498 -14.18283 -13.90584 -13.88459 -13.43383 -13.26912 -12.86013 -12.37237 -12.16230 -11.94467 -11.75213 -11.12956 -10.89281 -10.79533 -10.59321 -10.25859 -10.10227 -9.84983 -9.39669 -9.11782 -8.94622 -8.55355 -8.50760 -6.17148 -4.08582 1.98991 2.70480 3.00617 3.24480 3.31635 3.32916 3.43148 3.66208 3.90145 4.32903 4.33668 4.53657 4.67845 5.10475 5.57599 5.74255 6.05369 6.25615 6.28459 6.36809 6.57913 6.59695 6.75707 6.79450 6.83911 6.94916 7.07360 7.32396 7.50450 7.55904 7.63686 7.76144 8.11220 8.30169 8.88424 9.47423 10.92403 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.035681 B = 0.004395 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.547818 B = 6369.928842 C = 6786.425439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.291 1.291 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.493 4.493 8 C -0.008 4.008 9 C -0.113 4.113 10 C 0.151 3.849 11 H 0.080 0.920 12 N -0.707 5.707 13 C 0.475 3.525 14 O -0.525 6.525 15 C 0.026 3.974 16 H 0.143 0.857 17 N -0.808 5.808 18 C 0.469 3.531 19 F -0.175 7.175 20 F -0.168 7.168 21 F -0.175 7.175 22 C -0.115 4.115 23 C 0.013 3.987 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.398 0.602 30 H 0.365 0.635 31 H 0.361 0.639 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.007 0.993 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 -11.448 -8.203 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.720 3.280 4 H -0.218 1.218 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.512 4.512 8 C -0.046 4.046 9 C -0.152 4.152 10 C 0.049 3.951 11 H 0.098 0.902 12 N -0.356 5.356 13 C 0.255 3.745 14 O -0.401 6.401 15 C -0.093 4.093 16 H 0.160 0.840 17 N -0.341 5.341 18 C 0.413 3.587 19 F -0.156 7.156 20 F -0.150 7.150 21 F -0.156 7.156 22 C -0.153 4.153 23 C -0.024 4.024 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.233 0.767 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.335 -11.730 -8.064 17.023 hybrid contribution -0.026 1.366 0.250 1.389 sum 9.309 -10.364 -7.815 15.973 Atomic orbital electron populations 1.69816 1.06144 1.27176 1.49445 1.24836 0.94734 0.98574 0.94387 0.86647 0.79402 0.82954 0.79017 1.21787 1.19967 1.20033 1.20021 0.89258 0.91521 1.50374 1.19663 0.96684 0.94509 0.93747 1.21978 0.97083 0.95039 1.01081 1.21193 0.94931 0.88867 0.90135 0.90152 1.46563 1.22504 1.44743 1.21835 1.21041 0.82608 0.82402 0.88413 1.90751 1.57878 1.64836 1.26626 1.22744 0.92493 0.91063 1.02955 0.83968 1.59006 1.02046 1.33228 1.39794 1.19930 0.77473 0.86979 0.74270 1.93231 1.32738 1.94962 1.94717 1.93221 1.87255 1.72429 1.62062 1.93226 1.94657 1.86600 1.41129 1.21955 0.91900 0.98891 1.02571 1.19345 0.98802 0.92703 0.91600 0.92432 0.95505 0.96071 0.94585 0.92812 0.76747 0.81897 0.82346 0.94364 0.92522 0.97495 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 12.73 55.43 0.71 -24.19 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 20.87 26.80 -169.99 -4.56 16.32 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.49 -12.59 5.50 -98.92 -0.54 -13.14 16 8 C -0.01 -0.18 5.62 -27.27 -0.15 -0.34 16 9 C -0.11 -2.24 5.52 -26.41 -0.15 -2.39 16 10 C 0.15 2.80 2.34 -67.97 -0.16 2.64 16 11 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 12 N -0.71 -10.25 4.83 -53.85 -0.26 -10.51 16 13 C 0.47 6.72 6.56 -10.98 -0.07 6.65 16 14 O -0.52 -9.26 15.91 5.56 0.09 -9.18 16 15 C 0.03 0.27 3.16 -68.86 -0.22 0.05 16 16 H 0.14 1.08 8.14 -51.93 -0.42 0.65 16 17 N -0.81 -7.76 8.91 -5.65 -0.05 -7.81 16 18 C 0.47 5.34 2.82 37.16 0.10 5.44 16 19 F -0.18 -2.03 16.59 2.25 0.04 -1.99 16 20 F -0.17 -1.88 17.24 2.25 0.04 -1.84 16 21 F -0.17 -2.30 16.57 2.25 0.04 -2.26 16 22 C -0.11 -2.25 5.40 -26.61 -0.14 -2.39 16 23 C 0.01 0.32 5.97 -27.47 -0.16 0.16 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.61 5.17 -51.92 -0.27 0.34 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.40 4.72 8.37 -40.82 -0.34 4.37 16 30 H 0.37 3.05 9.06 -39.29 -0.36 2.69 16 31 H 0.36 3.75 8.16 -39.29 -0.32 3.43 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.63 7.07 -51.93 -0.37 1.27 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -28.96 299.98 -5.17 -34.13 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.14 Total: 4.16 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.59 Total: -1.34 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.40 Total: -42.51 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.56 Total: 16.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.96 -5.17 -34.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.657 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds