Wall clock time and date at job start Tue Mar 31 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.84892 * 180.27944 * 7 2 1 9 9 C 1.53652 * 108.31082 * 231.38027 * 8 7 2 10 10 C 1.52959 * 109.32660 * 305.14051 * 9 8 7 11 11 H 1.08997 * 109.35516 * 303.65524 * 10 9 8 12 12 N 1.46499 * 109.41821 * 183.83330 * 10 9 8 13 13 C 1.34779 * 119.99863 * 84.64317 * 12 10 9 14 14 O 1.21277 * 120.00027 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.99622 * 180.02562 * 13 12 10 16 16 H 1.08998 * 109.47402 * 40.00441 * 15 13 12 17 17 N 1.46902 * 109.47021 * 160.00390 * 15 13 12 18 18 C 1.53001 * 109.47217 * 280.00061 * 15 13 12 19 19 F 1.39901 * 109.46819 * 60.00306 * 18 15 13 20 20 F 1.39902 * 109.47339 * 180.02562 * 18 15 13 21 21 F 1.39900 * 109.47188 * 300.00570 * 18 15 13 22 22 C 1.52964 * 109.81574 * 63.72648 * 10 9 8 23 23 C 1.51267 * 120.84902 * 359.97438 * 7 2 1 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62493 * 351.04166 * 8 7 2 26 26 H 1.09007 * 109.62173 * 111.60914 * 8 7 2 27 27 H 1.09001 * 109.42132 * 185.24849 * 9 8 7 28 28 H 1.08999 * 109.63083 * 65.15653 * 9 8 7 29 29 H 0.97007 * 119.99832 * 264.65190 * 12 10 9 30 30 H 1.00900 * 110.99805 * 296.04383 * 17 15 13 31 31 H 1.00899 * 110.99932 * 59.99261 * 17 15 13 32 32 H 1.09002 * 109.47682 * 176.42377 * 22 10 9 33 33 H 1.08996 * 109.49475 * 56.39319 * 22 10 9 34 34 H 1.09001 * 109.63015 * 248.39200 * 23 7 2 35 35 H 1.09007 * 109.62669 * 8.96626 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 6 3.5171 -1.2166 0.0058 9 6 3.9911 -2.1308 -1.1346 10 6 3.3403 -3.5068 -0.9840 11 1 3.5740 -3.9112 0.0008 12 7 3.8605 -4.4072 -2.0159 13 6 5.0180 -5.0672 -1.8132 14 8 5.6286 -4.9162 -0.7763 15 6 5.5533 -5.9930 -2.8750 16 1 5.3970 -5.5479 -3.8576 17 7 6.9902 -6.2081 -2.6579 18 6 4.8199 -7.3337 -2.7998 19 9 3.4515 -7.1288 -3.0066 20 9 5.3174 -8.1933 -3.7851 21 9 5.0206 -7.9049 -1.5386 22 6 1.8232 -3.3823 -1.1356 23 6 1.2677 -2.5152 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.8989 -0.2074 -0.1496 26 1 3.8734 -1.6028 0.9608 27 1 5.0752 -2.2345 -1.0892 28 1 3.7070 -1.6974 -2.0935 29 1 3.3719 -4.5282 -2.8452 30 1 7.5052 -5.3472 -2.7664 31 1 7.1615 -6.6202 -1.7529 32 1 1.3710 -4.3731 -1.0909 33 1 1.5903 -2.9194 -2.0945 34 1 1.4199 -3.0194 0.9538 35 1 0.2036 -2.3409 -0.1601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:00 Heat of formation + Delta-G solvation = -231.115990 kcal Electronic energy + Delta-G solvation = -22968.707612 eV Core-core repulsion = 18970.640105 eV Total energy + Delta-G solvation = -3998.067507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.21276 -48.75012 -48.65934 -41.24830 -38.66979 -35.77806 -35.51455 -33.46321 -31.50543 -29.82360 -28.56315 -25.27738 -23.73622 -23.31550 -21.70718 -21.31213 -19.83850 -19.64195 -19.18011 -18.29283 -17.79207 -17.35075 -16.44574 -16.33461 -15.77516 -15.71311 -15.52605 -15.38180 -15.10047 -14.98187 -14.81614 -14.80767 -14.56918 -14.30278 -14.16397 -13.96916 -13.49942 -12.85780 -12.80684 -12.65779 -12.58289 -12.04537 -11.91027 -11.65357 -11.58361 -10.96850 -10.76154 -10.57133 -10.17740 -10.04172 -8.19065 -6.13454 0.96864 1.38561 1.40921 1.48176 1.71499 1.91743 2.39406 2.56475 2.78342 2.95093 3.09964 3.50238 3.55296 3.89910 4.00471 4.14859 4.44232 4.68432 4.78316 4.91955 5.03080 5.03708 5.16857 5.19704 5.49556 5.51626 5.52823 5.62190 5.73596 5.79182 6.05405 6.31780 6.37970 6.92065 6.99947 7.44922 8.91601 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.035681 B = 0.004395 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.547818 B = 6369.928842 C = 6786.425439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.293 1.293 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.502 4.502 8 C -0.012 4.012 9 C -0.104 4.104 10 C 0.164 3.836 11 H 0.057 0.943 12 N -0.699 5.699 13 C 0.475 3.525 14 O -0.560 6.560 15 C 0.040 3.960 16 H 0.180 0.820 17 N -0.802 5.802 18 C 0.469 3.531 19 F -0.176 7.176 20 F -0.165 7.165 21 F -0.188 7.188 22 C -0.102 4.102 23 C 0.008 3.992 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.014 0.986 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.415 0.585 30 H 0.374 0.626 31 H 0.357 0.643 32 H 0.057 0.943 33 H 0.061 0.939 34 H -0.004 1.004 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 -11.983 -9.929 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.219 1.219 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.521 4.521 8 C -0.050 4.050 9 C -0.143 4.143 10 C 0.060 3.940 11 H 0.076 0.924 12 N -0.350 5.350 13 C 0.258 3.742 14 O -0.439 6.439 15 C -0.078 4.078 16 H 0.197 0.803 17 N -0.335 5.335 18 C 0.413 3.587 19 F -0.157 7.157 20 F -0.146 7.146 21 F -0.169 7.169 22 C -0.140 4.140 23 C -0.030 4.030 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.252 0.748 30 H 0.191 0.809 31 H 0.172 0.828 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.014 0.986 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.932 -12.283 -9.828 19.157 hybrid contribution -0.509 1.445 0.829 1.742 sum 10.423 -10.838 -8.998 17.524 Atomic orbital electron populations 1.69943 1.07518 1.27623 1.51591 1.25547 0.95326 1.01559 0.94739 0.85840 0.78391 0.79626 0.79402 1.21950 1.19744 1.18734 1.20583 0.90852 0.91971 1.48725 1.19684 0.95001 0.95515 0.94825 1.21838 0.97627 0.95023 0.99844 1.20718 0.93998 0.88951 0.90382 0.92433 1.46276 1.22956 1.44159 1.21603 1.21694 0.81744 0.82152 0.88640 1.90744 1.58786 1.65945 1.28377 1.22778 0.92342 0.89583 1.03102 0.80300 1.59053 1.01474 1.33592 1.39391 1.20046 0.77518 0.87302 0.73821 1.93232 1.32879 1.94953 1.94666 1.93231 1.87205 1.72371 1.61803 1.93207 1.94726 1.86903 1.42098 1.21717 0.92739 0.98933 1.00660 1.19306 0.97386 0.93373 0.92930 0.92681 0.95305 0.96748 0.93620 0.92159 0.74811 0.80869 0.82786 0.92443 0.92046 0.98571 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 12.73 21.45 0.27 -52.77 16 2 C 0.03 1.46 5.46 84.66 0.46 1.92 16 3 Si 0.94 42.60 26.80 68.60 1.84 44.44 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.50 -25.71 5.50 -16.17 -0.09 -25.80 16 8 C -0.01 -0.54 5.62 30.25 0.17 -0.37 16 9 C -0.10 -3.95 5.52 30.80 0.17 -3.78 16 10 C 0.16 5.80 2.34 44.97 0.11 5.90 16 11 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 12 N -0.70 -18.35 4.83 -442.66 -2.14 -20.49 16 13 C 0.48 12.23 6.56 87.66 0.58 12.80 16 14 O -0.56 -18.83 15.91 -3.02 -0.05 -18.88 16 15 C 0.04 0.70 3.16 44.17 0.14 0.84 16 16 H 0.18 1.84 8.14 -2.39 -0.02 1.82 16 17 N -0.80 -13.13 8.91 -171.80 -1.53 -14.66 16 18 C 0.47 9.41 2.82 71.98 0.20 9.61 16 19 F -0.18 -3.59 16.59 44.97 0.75 -2.85 16 20 F -0.16 -3.22 17.24 44.97 0.78 -2.44 16 21 F -0.19 -4.61 16.57 44.97 0.75 -3.87 16 22 C -0.10 -3.88 5.40 30.67 0.17 -3.71 16 23 C 0.01 0.39 5.97 30.12 0.18 0.57 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.03 1.26 5.17 -2.38 -0.01 1.25 16 26 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.41 8.34 8.37 -92.70 -0.78 7.56 16 30 H 0.37 5.11 9.06 -89.69 -0.81 4.30 16 31 H 0.36 6.68 8.16 -89.70 -0.73 5.95 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.03 1.83 7.07 -2.38 -0.02 1.81 16 Total: -1.00 -62.54 299.98 1.59 -60.95 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -1.15 Total: 12.59 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 2.08 Total: -2.02 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -3.40 Total: -87.92 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 2.27 Total: -9.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.84 Total: 44.44 kcal Total: -62.54 1.59 -60.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.168 kcal (2) G-P(sol) polarization free energy of solvation -62.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds