Wall clock time and date at job start Tue Mar 31 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32522 * 120.41152 * 2 1 4 4 C 1.31762 * 120.96723 * 180.31299 * 3 2 1 5 5 N 1.31793 * 121.81166 * 359.65212 * 4 3 2 6 6 C 1.32800 * 120.71834 * 0.03475 * 5 4 3 7 7 O 1.35511 * 120.51432 * 180.02562 * 6 5 4 8 8 C 1.38184 * 120.41078 * 179.69337 * 2 1 3 9 9 C 1.50696 * 120.82845 * 0.02562 * 8 2 1 10 10 C 1.52998 * 109.46969 * 269.72294 * 9 8 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 O 1.20830 * 119.99594 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00024 * 179.72254 * 11 10 9 14 14 C 1.45201 * 116.99867 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99488 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00064 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99915 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00046 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 89.99900 * 20 18 16 22 22 H 1.48501 * 109.46840 * 209.99871 * 20 18 16 23 23 H 1.48497 * 109.47125 * 329.99835 * 20 18 16 24 24 H 1.08994 * 109.46922 * 270.30581 * 1 2 3 25 25 H 1.09006 * 109.46880 * 30.30428 * 1 2 3 26 26 H 1.08993 * 109.46836 * 150.30483 * 1 2 3 27 27 H 1.08000 * 119.09637 * 179.68654 * 4 3 2 28 28 H 0.96701 * 114.00031 * 269.97295 * 7 6 5 29 29 H 1.09000 * 109.47664 * 149.72223 * 9 8 2 30 30 H 1.09002 * 109.46824 * 29.71694 * 9 8 2 31 31 H 1.09001 * 109.47671 * 59.99812 * 10 9 8 32 32 H 1.08998 * 109.47454 * 299.99809 * 10 9 8 33 33 H 1.09009 * 109.46864 * 300.00062 * 14 13 11 34 34 H 1.09001 * 109.47271 * 60.00074 * 14 13 11 35 35 H 1.09009 * 109.46963 * 299.99598 * 15 14 13 36 36 H 1.08997 * 109.47571 * 60.00140 * 15 14 13 37 37 H 0.96993 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1429 0.0000 4 6 3.4954 1.1557 -0.0062 5 7 4.2010 0.0425 -0.0058 6 6 3.5999 -1.1416 0.0002 7 8 4.3294 -2.2836 0.0012 8 6 2.2065 -1.1917 0.0064 9 6 1.4814 -2.5127 0.0129 10 6 1.2416 -2.9557 1.4575 11 6 0.5159 -4.2766 1.4641 12 8 0.2204 -4.8087 0.4203 13 8 0.2024 -4.8642 2.6294 14 6 -0.4960 -6.1354 2.5597 15 6 -0.7665 -6.6469 3.9760 16 6 -1.4919 -7.9660 3.9037 17 1 -1.7359 -8.3961 2.9436 18 6 -1.8440 -8.6235 5.0633 19 7 -2.4775 -9.7744 5.0002 20 14 -1.4226 -7.8792 6.7239 21 1 -2.5382 -7.0081 7.1734 22 1 -1.2129 -8.9656 7.7144 23 1 -0.1819 -7.0722 6.6042 24 1 -0.3633 0.0055 1.0276 25 1 -0.3633 0.8873 -0.5186 26 1 -0.3633 -0.8927 -0.5091 27 1 4.0114 2.1044 -0.0111 28 1 4.5375 -2.6181 -0.8820 29 1 2.0847 -3.2610 -0.5012 30 1 0.5244 -2.4044 -0.4975 31 1 0.6383 -2.2076 1.9717 32 1 2.1986 -3.0641 1.9680 33 1 -1.4421 -6.0018 2.0351 34 1 0.1182 -6.8584 2.0230 35 1 0.1794 -6.7804 4.5010 36 1 -1.3809 -5.9238 4.5124 37 1 -2.7256 -10.2369 5.8159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248621752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:38 Heat of formation + Delta-G solvation = -95.535602 kcal Electronic energy + Delta-G solvation = -20892.784348 eV Core-core repulsion = 17442.452788 eV Total energy + Delta-G solvation = -3450.331560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72636 -40.09554 -38.08395 -36.56843 -35.48243 -33.59858 -33.32623 -31.23956 -30.60549 -28.90105 -26.36884 -24.92248 -23.26837 -22.61314 -20.77412 -20.40464 -19.22172 -18.48101 -17.65465 -16.76702 -16.62882 -16.37768 -15.95740 -15.39175 -14.67694 -14.53870 -14.39269 -14.17953 -13.69318 -13.36768 -13.17812 -13.11656 -12.84404 -12.66103 -12.38884 -12.25162 -11.55498 -11.36505 -11.30377 -10.96055 -10.72698 -10.68287 -10.62284 -10.05450 -9.95761 -9.73808 -9.69351 -9.56916 -9.37210 -8.64575 -6.15202 -4.16613 0.38649 0.54651 2.43755 2.91207 3.00662 3.26226 3.30375 3.33910 3.38264 3.62151 3.94314 4.30565 4.36631 4.36842 4.64528 4.74456 4.86519 4.98516 5.11559 5.18362 5.20427 5.24743 5.37107 5.50460 5.68713 5.69600 5.92610 5.93713 5.97480 6.41744 6.51604 6.75795 6.95373 7.15726 7.19207 7.59844 7.65491 8.06614 8.37138 8.86212 9.44354 10.97352 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.002892 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.250781 B = 9678.177706 C = 9710.181456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.194 3.806 3 N -0.526 5.526 4 C 0.318 3.682 5 N -0.544 5.544 6 C 0.367 3.633 7 O -0.471 6.471 8 C -0.203 4.203 9 C -0.057 4.057 10 C -0.109 4.109 11 C 0.458 3.542 12 O -0.516 6.516 13 O -0.361 6.361 14 C 0.082 3.918 15 C -0.010 4.010 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.201 0.799 28 H 0.409 0.591 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 21.888 -11.406 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.049 3.951 3 N -0.242 5.242 4 C 0.030 3.970 5 N -0.269 5.269 6 C 0.180 3.820 7 O -0.279 6.279 8 C -0.208 4.208 9 C -0.095 4.095 10 C -0.147 4.147 11 C 0.301 3.699 12 O -0.405 6.405 13 O -0.278 6.278 14 C 0.010 3.990 15 C -0.047 4.047 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.708 3.292 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.188 1.188 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.218 0.782 28 H 0.269 0.731 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.760 22.358 -10.984 27.135 hybrid contribution -0.051 -0.719 0.418 0.833 sum 10.709 21.639 -10.566 26.355 Atomic orbital electron populations 1.20942 0.87363 1.04631 1.04370 1.21608 0.97849 0.86891 0.88726 1.68298 1.10264 1.30040 1.15589 1.24797 0.86397 0.95890 0.89919 1.67998 1.43266 0.98967 1.16649 1.19335 0.86624 0.85682 0.90348 1.84738 1.73501 1.35360 1.34286 1.21574 0.94277 0.98169 1.06825 1.20203 1.01329 0.91910 0.96067 1.21286 1.02205 0.92769 0.98446 1.23393 0.77001 0.87049 0.82434 1.90646 1.51454 1.64952 1.33494 1.86488 1.69429 1.38346 1.33494 1.23396 0.94902 0.79016 1.01696 1.19631 0.97725 0.96788 0.90591 1.20840 1.37490 1.03037 0.95231 0.90650 1.24940 0.94228 0.94582 0.99258 1.69893 1.39593 1.15248 1.28751 0.86747 0.79706 0.79121 0.83612 1.20045 1.21149 1.18763 0.89016 0.89533 0.89340 0.78230 0.73114 0.89274 0.88946 0.87908 0.87522 0.91669 0.91645 0.95380 0.95819 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.84 36.01 0.35 -0.40 16 2 C 0.19 1.70 6.82 -82.31 -0.56 1.14 16 3 N -0.53 -4.96 10.37 -10.87 -0.11 -5.07 16 4 C 0.32 2.75 12.28 -92.18 -1.13 1.62 16 5 N -0.54 -5.56 10.46 -14.63 -0.15 -5.71 16 6 C 0.37 3.58 7.81 -16.69 -0.13 3.45 16 7 O -0.47 -4.04 12.75 -18.23 -0.23 -4.27 16 8 C -0.20 -1.82 5.18 -104.20 -0.54 -2.36 16 9 C -0.06 -0.51 4.10 -27.89 -0.11 -0.63 16 10 C -0.11 -1.16 5.79 -27.88 -0.16 -1.33 16 11 C 0.46 7.08 7.96 36.01 0.29 7.36 16 12 O -0.52 -9.13 15.73 -18.75 -0.30 -9.43 16 13 O -0.36 -6.62 10.22 -39.24 -0.40 -7.02 16 14 C 0.08 1.73 5.40 37.16 0.20 1.93 16 15 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 16 C -0.53 -14.91 9.66 -34.44 -0.33 -15.25 16 17 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 20 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.51 6.06 -51.93 -0.31 0.19 16 27 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.41 1.52 9.06 45.56 0.41 1.93 16 29 H 0.09 0.82 7.59 -51.93 -0.39 0.42 16 30 H 0.09 0.79 6.02 -51.93 -0.31 0.48 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 34 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 35 H 0.03 0.67 7.20 -51.92 -0.37 0.30 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -34.67 323.16 -6.49 -41.16 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.92 Total: -1.89 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.35 Total: -2.84 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.51 Total: -37.24 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.93 Total: -20.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.67 -6.49 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248621752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.374 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds