Wall clock time and date at job start Tue Mar 31 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32522 * 120.41152 * 2 1 4 4 C 1.31762 * 120.96723 * 180.31299 * 3 2 1 5 5 N 1.31793 * 121.81166 * 359.65212 * 4 3 2 6 6 C 1.32800 * 120.71834 * 0.03475 * 5 4 3 7 7 O 1.35511 * 120.51432 * 180.02562 * 6 5 4 8 8 C 1.38184 * 120.41078 * 179.69337 * 2 1 3 9 9 C 1.50696 * 120.82845 * 0.02562 * 8 2 1 10 10 C 1.52998 * 109.46969 * 269.72294 * 9 8 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 O 1.20830 * 119.99594 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00024 * 179.72254 * 11 10 9 14 14 C 1.45201 * 116.99867 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99488 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00064 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99915 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00046 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 89.99900 * 20 18 16 22 22 H 1.48501 * 109.46840 * 209.99871 * 20 18 16 23 23 H 1.48497 * 109.47125 * 329.99835 * 20 18 16 24 24 H 1.08994 * 109.46922 * 270.30581 * 1 2 3 25 25 H 1.09006 * 109.46880 * 30.30428 * 1 2 3 26 26 H 1.08993 * 109.46836 * 150.30483 * 1 2 3 27 27 H 1.08000 * 119.09637 * 179.68654 * 4 3 2 28 28 H 0.96701 * 114.00031 * 269.97295 * 7 6 5 29 29 H 1.09000 * 109.47664 * 149.72223 * 9 8 2 30 30 H 1.09002 * 109.46824 * 29.71694 * 9 8 2 31 31 H 1.09001 * 109.47671 * 59.99812 * 10 9 8 32 32 H 1.08998 * 109.47454 * 299.99809 * 10 9 8 33 33 H 1.09009 * 109.46864 * 300.00062 * 14 13 11 34 34 H 1.09001 * 109.47271 * 60.00074 * 14 13 11 35 35 H 1.09009 * 109.46963 * 299.99598 * 15 14 13 36 36 H 1.08997 * 109.47571 * 60.00140 * 15 14 13 37 37 H 0.96993 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1429 0.0000 4 6 3.4954 1.1557 -0.0062 5 7 4.2010 0.0425 -0.0058 6 6 3.5999 -1.1416 0.0002 7 8 4.3294 -2.2836 0.0012 8 6 2.2065 -1.1917 0.0064 9 6 1.4814 -2.5127 0.0129 10 6 1.2416 -2.9557 1.4575 11 6 0.5159 -4.2766 1.4641 12 8 0.2204 -4.8087 0.4203 13 8 0.2024 -4.8642 2.6294 14 6 -0.4960 -6.1354 2.5597 15 6 -0.7665 -6.6469 3.9760 16 6 -1.4919 -7.9660 3.9037 17 1 -1.7359 -8.3961 2.9436 18 6 -1.8440 -8.6235 5.0633 19 7 -2.4775 -9.7744 5.0002 20 14 -1.4226 -7.8792 6.7239 21 1 -2.5382 -7.0081 7.1734 22 1 -1.2129 -8.9656 7.7144 23 1 -0.1819 -7.0722 6.6042 24 1 -0.3633 0.0055 1.0276 25 1 -0.3633 0.8873 -0.5186 26 1 -0.3633 -0.8927 -0.5091 27 1 4.0114 2.1044 -0.0111 28 1 4.5375 -2.6181 -0.8820 29 1 2.0847 -3.2610 -0.5012 30 1 0.5244 -2.4044 -0.4975 31 1 0.6383 -2.2076 1.9717 32 1 2.1986 -3.0641 1.9680 33 1 -1.4421 -6.0018 2.0351 34 1 0.1182 -6.8584 2.0230 35 1 0.1794 -6.7804 4.5010 36 1 -1.3809 -5.9238 4.5124 37 1 -2.7256 -10.2369 5.8159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248621752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:38 Heat of formation + Delta-G solvation = -120.724444 kcal Electronic energy + Delta-G solvation = -20893.876618 eV Core-core repulsion = 17442.452788 eV Total energy + Delta-G solvation = -3451.423830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38933 -41.41886 -38.71373 -37.91255 -36.29800 -35.39299 -34.29706 -32.84959 -31.72079 -29.53437 -27.62966 -26.35210 -23.95681 -23.47188 -22.59590 -21.60414 -19.85088 -19.27708 -19.12995 -18.43006 -17.71495 -17.43408 -17.13064 -16.33027 -16.11832 -15.66847 -15.34760 -15.17420 -14.78573 -14.53624 -14.27204 -14.17269 -13.79587 -13.56907 -13.40408 -13.23502 -13.08189 -12.87742 -12.47885 -12.41243 -12.12244 -11.81989 -11.68879 -11.55040 -11.42614 -11.39777 -11.33077 -10.81413 -10.36830 -10.25691 -8.34781 -6.42896 -0.26230 -0.09967 1.19496 1.38009 1.39845 1.52361 1.74271 2.33539 2.34076 2.63058 3.00212 3.06364 3.32637 3.50035 3.71022 3.78885 4.02559 4.11573 4.19055 4.20640 4.28818 4.40370 4.53033 4.64004 4.66562 4.71997 4.96356 5.01437 5.05795 5.06721 5.28998 5.40396 5.50648 5.60219 5.87739 6.15272 6.48160 6.63409 6.73494 7.01692 7.22395 8.81300 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.002892 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.250781 B = 9678.177706 C = 9710.181456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.191 3.809 3 N -0.541 5.541 4 C 0.316 3.684 5 N -0.567 5.567 6 C 0.362 3.638 7 O -0.482 6.482 8 C -0.206 4.206 9 C -0.049 4.049 10 C -0.098 4.098 11 C 0.458 3.542 12 O -0.540 6.540 13 O -0.365 6.365 14 C 0.093 3.907 15 C -0.005 4.005 16 C -0.542 4.542 17 H 0.036 0.964 18 C 0.012 3.988 19 N -0.945 5.945 20 Si 0.954 3.046 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.245 1.245 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.229 0.771 28 H 0.427 0.573 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.292 24.193 -10.563 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.047 3.953 3 N -0.257 5.257 4 C 0.029 3.971 5 N -0.292 5.292 6 C 0.175 3.825 7 O -0.293 6.293 8 C -0.211 4.211 9 C -0.088 4.088 10 C -0.135 4.135 11 C 0.303 3.697 12 O -0.430 6.430 13 O -0.281 6.281 14 C 0.020 3.980 15 C -0.042 4.042 16 C -0.580 4.580 17 H 0.054 0.946 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.776 3.224 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.169 1.169 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.245 0.755 28 H 0.290 0.710 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.571 24.676 -10.178 29.093 hybrid contribution -0.279 -1.433 0.018 1.460 sum 11.292 23.243 -10.160 27.766 Atomic orbital electron populations 1.21035 0.85871 1.05305 1.05126 1.21988 0.98898 0.86691 0.87754 1.68384 1.10635 1.30319 1.16360 1.25407 0.86437 0.96593 0.88652 1.68061 1.43863 0.99492 1.17792 1.19526 0.87076 0.85881 0.90060 1.84687 1.73457 1.35105 1.36059 1.21460 0.93914 0.98007 1.07742 1.20128 1.01693 0.91947 0.95009 1.21391 1.02041 0.90137 0.99954 1.24339 0.76300 0.87941 0.81159 1.90643 1.52465 1.65831 1.34089 1.86475 1.69445 1.37009 1.35187 1.22928 0.94946 0.80416 0.99714 1.19473 0.97378 0.94851 0.92547 1.21129 1.37977 1.05019 0.93880 0.94579 1.25951 0.93899 0.94902 1.03887 1.70040 1.41098 1.17041 1.30233 0.85606 0.80418 0.78575 0.77782 1.18696 1.20697 1.16856 0.88065 0.88963 0.88602 0.75502 0.71018 0.89542 0.88314 0.85561 0.86789 0.92186 0.92529 0.94840 0.94699 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.84 71.24 0.70 -0.53 16 2 C 0.19 2.97 6.82 42.44 0.29 3.26 16 3 N -0.54 -9.20 10.37 -188.29 -1.95 -11.15 16 4 C 0.32 4.93 12.28 180.89 2.22 7.15 16 5 N -0.57 -10.76 10.46 -312.89 -3.27 -14.04 16 6 C 0.36 6.49 7.81 84.83 0.66 7.16 16 7 O -0.48 -7.60 12.75 -88.13 -1.12 -8.73 16 8 C -0.21 -3.30 5.18 -19.59 -0.10 -3.40 16 9 C -0.05 -0.80 4.10 29.85 0.12 -0.67 16 10 C -0.10 -1.84 5.79 29.85 0.17 -1.67 16 11 C 0.46 13.40 7.96 71.24 0.57 13.96 16 12 O -0.54 -18.62 15.73 21.95 0.35 -18.28 16 13 O -0.36 -12.77 10.22 -51.34 -0.52 -13.29 16 14 C 0.09 3.89 5.40 71.98 0.39 4.27 16 15 C -0.01 -0.24 4.42 29.85 0.13 -0.10 16 16 C -0.54 -31.13 9.66 25.60 0.25 -30.88 16 17 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 18 C 0.01 0.67 5.47 84.65 0.46 1.13 16 19 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 20 Si 0.95 43.14 27.47 68.60 1.88 45.03 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.25 -10.31 6.54 99.48 0.65 -9.65 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.10 0.87 6.06 -2.39 -0.01 0.85 16 27 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.43 2.68 9.06 -74.06 -0.67 2.00 16 29 H 0.09 1.45 7.59 -2.39 -0.02 1.43 16 30 H 0.10 1.48 6.02 -2.39 -0.01 1.46 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 35 H 0.03 1.53 7.20 -2.38 -0.02 1.52 16 36 H 0.03 1.56 7.57 -2.39 -0.02 1.54 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.66 323.16 1.90 -72.76 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.38 Total: 6.15 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.87 Total: -0.32 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -4.93 Total: -83.33 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.30 Total: -40.30 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -74.66 1.90 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248621752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.960 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds