Wall clock time and date at job start Tue Mar 31 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35491 * 125.50929 * 2 1 4 4 C 1.39795 * 107.84403 * 180.22811 * 3 2 1 5 5 C 1.50697 * 126.51541 * 179.77133 * 4 3 2 6 6 C 1.37998 * 106.96627 * 359.63739 * 4 3 2 7 7 C 1.46496 * 126.26065 * 180.13454 * 6 4 3 8 8 O 1.21615 * 120.00062 * 0.24353 * 7 6 4 9 9 O 1.34892 * 119.99516 * 180.24446 * 7 6 4 10 10 C 1.45203 * 116.99473 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99913 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00351 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47148 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99862 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31506 * 119.99939 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46936 * 59.99931 * 19 17 15 21 21 H 1.48499 * 109.46749 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47154 * 299.99598 * 19 17 15 23 23 N 1.34954 * 125.50592 * 180.02562 * 2 1 3 24 24 H 0.97002 * 125.64253 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47155 * 89.99806 * 1 2 3 26 26 H 1.09000 * 109.47217 * 209.99790 * 1 2 3 27 27 H 1.08997 * 109.46987 * 330.00198 * 1 2 3 28 28 H 1.08002 * 126.07453 * 359.95957 * 3 2 1 29 29 H 1.09006 * 109.46869 * 90.02645 * 5 4 3 30 30 H 1.09006 * 109.47194 * 210.02310 * 5 4 3 31 31 H 1.08998 * 109.47240 * 330.02802 * 5 4 3 32 32 H 1.09003 * 109.47280 * 299.99599 * 10 9 7 33 33 H 1.09000 * 109.47511 * 59.99996 * 10 9 7 34 34 H 0.97001 * 119.99686 * 0.02562 * 13 11 10 35 35 H 1.09003 * 109.46982 * 300.00376 * 14 13 11 36 36 H 1.09000 * 109.46841 * 60.00181 * 14 13 11 37 37 H 0.97008 * 119.99550 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.1029 0.0000 4 6 3.6260 0.6787 -0.0053 5 6 4.8479 1.5606 -0.0121 6 6 3.6092 -0.7011 -0.0001 7 6 4.7798 -1.5819 -0.0001 8 8 5.8989 -1.1060 -0.0005 9 8 4.6163 -2.9209 0.0004 10 6 5.8206 -3.7320 0.0010 11 6 5.4436 -5.1911 0.0008 12 8 4.2749 -5.5154 0.0008 13 7 6.4051 -6.1356 0.0008 14 6 6.0386 -7.5540 0.0012 15 6 7.2885 -8.3958 0.0016 16 1 8.2588 -7.9217 0.0020 17 6 7.1933 -9.7713 0.0016 18 7 6.0117 -10.3486 0.0016 19 14 8.7427 -10.8148 0.0014 20 1 9.5444 -10.5107 1.2139 21 1 8.3711 -12.2526 0.0020 22 1 9.5442 -10.5107 -1.2111 23 7 2.2908 -1.0986 -0.0005 24 1 1.9774 -2.0166 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9528 2.1276 -0.0006 29 1 5.1474 1.7744 1.0140 30 1 5.6610 1.0510 -0.5291 31 1 4.6193 2.4944 -0.5258 32 1 6.4092 -3.5092 -0.8890 33 1 6.4089 -3.5085 0.8910 34 1 7.3398 -5.8762 0.0012 35 1 5.4504 -7.7770 0.8914 36 1 5.4500 -7.7774 -0.8886 37 1 5.9447 -11.3164 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252981907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:57 Heat of formation + Delta-G solvation = -93.062687 kcal Electronic energy + Delta-G solvation = -20721.840507 eV Core-core repulsion = 17271.616180 eV Total energy + Delta-G solvation = -3450.224327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71329 -40.09318 -38.66250 -36.35446 -34.29070 -33.02808 -32.44899 -31.90613 -29.39152 -27.98017 -27.19430 -26.18065 -22.85437 -21.98597 -20.69644 -20.00045 -19.43899 -18.60343 -17.41782 -16.69439 -16.67203 -15.75051 -15.22597 -15.20835 -14.99602 -14.43653 -14.27923 -13.70559 -13.39953 -13.34335 -13.15051 -12.95997 -12.89641 -12.52820 -12.48343 -12.30527 -12.01942 -11.81056 -11.75885 -11.05819 -10.92787 -10.73260 -10.58544 -10.37157 -9.48712 -9.23298 -9.00603 -8.80885 -8.33337 -8.03115 -6.22227 -4.29850 1.06643 2.36076 2.38726 2.92264 2.97233 3.13377 3.22644 3.27567 3.29021 3.97792 4.31216 4.51029 4.73564 4.84650 4.92752 5.11754 5.13925 5.18021 5.20328 5.21513 5.30385 5.48531 5.53794 5.65890 5.68282 5.93699 6.07325 6.31797 6.51629 6.72528 7.18419 7.18729 7.26444 7.41885 7.56458 7.68857 7.88876 8.45753 8.67266 8.91874 9.36613 10.87884 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036408 B = 0.002798 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.871292 B =10005.338494 C =10743.154371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.066 3.934 3 C -0.215 4.215 4 C -0.061 4.061 5 C -0.093 4.093 6 C -0.047 4.047 7 C 0.535 3.465 8 O -0.501 6.501 9 O -0.336 6.336 10 C 0.052 3.948 11 C 0.500 3.500 12 O -0.538 6.538 13 N -0.705 5.705 14 C 0.252 3.748 15 C -0.546 4.546 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.521 5.521 24 H 0.427 0.573 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 22.482 -0.033 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.239 4.239 4 C -0.069 4.069 5 C -0.150 4.150 6 C -0.158 4.158 7 C 0.381 3.619 8 O -0.390 6.390 9 O -0.252 6.252 10 C -0.025 4.025 11 C 0.283 3.717 12 O -0.415 6.415 13 N -0.355 5.355 14 C 0.131 3.869 15 C -0.585 4.585 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 N -0.117 5.117 24 H 0.266 0.734 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.447 21.929 -0.034 23.159 hybrid contribution 1.234 -1.066 0.011 1.630 sum -6.213 20.864 -0.023 21.769 Atomic orbital electron populations 1.20468 0.87370 1.03882 1.03325 1.20534 0.93983 0.86275 1.04595 1.20552 0.91414 0.98113 1.13843 1.19965 0.95897 0.90295 1.00731 1.20391 0.94417 0.97687 1.02477 1.19043 0.81924 0.92346 1.22445 1.19833 0.87929 0.80830 0.73354 1.90863 1.24728 1.76293 1.47076 1.86608 1.36802 1.17585 1.84156 1.22860 0.85511 0.89388 1.04769 1.19895 0.86873 0.86234 0.78686 1.90693 1.18407 1.82595 1.49836 1.46366 1.08335 1.08561 1.72272 1.19174 0.96728 0.72955 0.97996 1.21169 0.92191 0.91417 1.53688 0.91779 1.24952 0.96665 0.97785 0.94559 1.69961 1.22957 1.10742 1.48573 0.86439 0.82497 0.79025 0.78759 1.20004 1.21029 1.20000 1.41851 1.05122 1.09327 1.55352 0.73414 0.90309 0.91133 0.89601 0.83657 0.91208 0.90167 0.91630 0.88347 0.88336 0.77350 0.95278 0.95269 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.41 36.01 0.37 -0.14 16 2 C 0.07 0.61 7.11 -82.20 -0.58 0.02 16 3 C -0.22 -2.08 10.66 -39.98 -0.43 -2.51 16 4 C -0.06 -0.71 6.22 -104.13 -0.65 -1.36 16 5 C -0.09 -0.94 9.83 36.00 0.35 -0.59 16 6 C -0.05 -0.62 7.10 -81.99 -0.58 -1.21 16 7 C 0.53 8.05 7.93 34.06 0.27 8.32 16 8 O -0.50 -7.98 14.62 -19.35 -0.28 -8.26 16 9 O -0.34 -5.45 9.77 -47.71 -0.47 -5.92 16 10 C 0.05 0.80 5.96 36.01 0.21 1.02 16 11 C 0.50 9.98 7.91 -10.98 -0.09 9.89 16 12 O -0.54 -12.97 16.50 -14.11 -0.23 -13.20 16 13 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 14 C 0.25 6.55 5.43 -5.20 -0.03 6.52 16 15 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 19 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 N -0.52 -5.75 6.07 -5.82 -0.04 -5.78 16 24 H 0.43 4.31 8.96 -40.82 -0.37 3.94 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -33.65 330.95 -7.02 -40.67 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.80 Total: 5.07 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.56 Total: 6.73 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.36 Total: -45.67 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.98 Total: -27.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.65 -7.02 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252981907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.397 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds