Wall clock time and date at job start Tue Mar 31 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35491 * 125.50929 * 2 1 4 4 C 1.39795 * 107.84403 * 180.22811 * 3 2 1 5 5 C 1.50697 * 126.51541 * 179.77133 * 4 3 2 6 6 C 1.37998 * 106.96627 * 359.63739 * 4 3 2 7 7 C 1.46496 * 126.26065 * 180.13454 * 6 4 3 8 8 O 1.21615 * 120.00062 * 0.24353 * 7 6 4 9 9 O 1.34892 * 119.99516 * 180.24446 * 7 6 4 10 10 C 1.45203 * 116.99473 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99913 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00351 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00186 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47148 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99862 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31506 * 119.99939 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46936 * 59.99931 * 19 17 15 21 21 H 1.48499 * 109.46749 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47154 * 299.99598 * 19 17 15 23 23 N 1.34954 * 125.50592 * 180.02562 * 2 1 3 24 24 H 0.97002 * 125.64253 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47155 * 89.99806 * 1 2 3 26 26 H 1.09000 * 109.47217 * 209.99790 * 1 2 3 27 27 H 1.08997 * 109.46987 * 330.00198 * 1 2 3 28 28 H 1.08002 * 126.07453 * 359.95957 * 3 2 1 29 29 H 1.09006 * 109.46869 * 90.02645 * 5 4 3 30 30 H 1.09006 * 109.47194 * 210.02310 * 5 4 3 31 31 H 1.08998 * 109.47240 * 330.02802 * 5 4 3 32 32 H 1.09003 * 109.47280 * 299.99599 * 10 9 7 33 33 H 1.09000 * 109.47511 * 59.99996 * 10 9 7 34 34 H 0.97001 * 119.99686 * 0.02562 * 13 11 10 35 35 H 1.09003 * 109.46982 * 300.00376 * 14 13 11 36 36 H 1.09000 * 109.46841 * 60.00181 * 14 13 11 37 37 H 0.97008 * 119.99550 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.1029 0.0000 4 6 3.6260 0.6787 -0.0053 5 6 4.8479 1.5606 -0.0121 6 6 3.6092 -0.7011 -0.0001 7 6 4.7798 -1.5819 -0.0001 8 8 5.8989 -1.1060 -0.0005 9 8 4.6163 -2.9209 0.0004 10 6 5.8206 -3.7320 0.0010 11 6 5.4436 -5.1911 0.0008 12 8 4.2749 -5.5154 0.0008 13 7 6.4051 -6.1356 0.0008 14 6 6.0386 -7.5540 0.0012 15 6 7.2885 -8.3958 0.0016 16 1 8.2588 -7.9217 0.0020 17 6 7.1933 -9.7713 0.0016 18 7 6.0117 -10.3486 0.0016 19 14 8.7427 -10.8148 0.0014 20 1 9.5444 -10.5107 1.2139 21 1 8.3711 -12.2526 0.0020 22 1 9.5442 -10.5107 -1.2111 23 7 2.2908 -1.0986 -0.0005 24 1 1.9774 -2.0166 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9528 2.1276 -0.0006 29 1 5.1474 1.7744 1.0140 30 1 5.6610 1.0510 -0.5291 31 1 4.6193 2.4944 -0.5258 32 1 6.4092 -3.5092 -0.8890 33 1 6.4089 -3.5085 0.8910 34 1 7.3398 -5.8762 0.0012 35 1 5.4504 -7.7770 0.8914 36 1 5.4500 -7.7774 -0.8886 37 1 5.9447 -11.3164 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252981907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:57 Heat of formation + Delta-G solvation = -116.016429 kcal Electronic energy + Delta-G solvation = -20722.835855 eV Core-core repulsion = 17271.616180 eV Total energy + Delta-G solvation = -3451.219676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57680 -41.31461 -40.26784 -37.58017 -36.22022 -34.44824 -33.82080 -32.64310 -30.89560 -28.89174 -28.58110 -27.36340 -24.70552 -23.14657 -21.70419 -21.44354 -20.41564 -19.62511 -19.09398 -18.05121 -17.89314 -17.45580 -16.95840 -16.38322 -16.30226 -15.76632 -15.65330 -14.77014 -14.50529 -14.44522 -14.14099 -14.00873 -13.93668 -13.83784 -13.66137 -13.58453 -13.12524 -12.99253 -12.97902 -12.69921 -12.52787 -12.25962 -11.97844 -11.66706 -11.54693 -10.96646 -10.82810 -9.97171 -9.80280 -9.16368 -8.31571 -6.48358 0.09883 1.15727 1.43442 1.46482 1.49455 1.55140 1.60607 1.99156 2.09164 2.33190 2.56400 3.03705 3.60712 3.77081 3.88574 4.00508 4.01292 4.12490 4.20023 4.60921 4.74963 4.80988 4.86914 4.90060 5.00324 5.07604 5.14117 5.18708 5.20109 5.38199 5.44283 5.59805 5.74110 5.79491 5.91060 6.40690 6.54445 6.60229 6.73924 7.17163 7.31573 8.80359 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036408 B = 0.002798 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.871292 B =10005.338494 C =10743.154371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.079 3.921 3 C -0.223 4.223 4 C -0.063 4.063 5 C -0.092 4.092 6 C -0.090 4.090 7 C 0.534 3.466 8 O -0.517 6.517 9 O -0.353 6.353 10 C 0.063 3.937 11 C 0.501 3.499 12 O -0.584 6.584 13 N -0.697 5.697 14 C 0.267 3.733 15 C -0.559 4.559 16 H 0.086 0.914 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.262 1.262 23 N -0.526 5.526 24 H 0.427 0.573 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.173 0.827 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.413 0.587 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 24.280 -0.023 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.246 4.246 4 C -0.072 4.072 5 C -0.148 4.148 6 C -0.199 4.199 7 C 0.382 3.618 8 O -0.407 6.407 9 O -0.269 6.269 10 C -0.013 4.013 11 C 0.286 3.714 12 O -0.465 6.465 13 N -0.349 5.349 14 C 0.145 3.855 15 C -0.596 4.596 16 H 0.104 0.896 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.211 1.211 22 H -0.187 1.187 23 N -0.123 5.123 24 H 0.266 0.734 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.249 0.751 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.649 23.775 -0.024 24.687 hybrid contribution 0.855 -1.517 0.006 1.741 sum -5.795 22.258 -0.018 23.000 Atomic orbital electron populations 1.20637 0.84606 1.05202 1.04529 1.21241 0.95623 0.85536 1.01735 1.20930 0.90430 0.99582 1.13677 1.20364 0.97377 0.89915 0.99495 1.20417 0.93356 0.98242 1.02831 1.19074 0.82248 0.92727 1.25822 1.20119 0.88555 0.80198 0.72904 1.90838 1.25354 1.76224 1.48317 1.86598 1.37185 1.18523 1.84613 1.22743 0.85598 0.85758 1.07243 1.20645 0.85848 0.88089 0.76772 1.90669 1.20460 1.83733 1.51638 1.46039 1.09701 1.06750 1.72371 1.18630 0.96154 0.76138 0.94592 1.21581 0.92923 0.91908 1.53230 0.89591 1.26052 1.00254 0.99401 0.93776 1.70122 1.25784 1.11193 1.49746 0.85202 0.77899 0.76585 0.79517 1.18665 1.21114 1.18655 1.41959 1.04761 1.09942 1.55600 0.73366 0.89012 0.90601 0.87505 0.80916 0.90718 0.91968 0.89253 0.85749 0.85738 0.75061 0.98951 0.98941 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.41 71.24 0.74 -0.03 16 2 C 0.08 1.30 7.11 41.44 0.29 1.60 16 3 C -0.22 -3.80 10.66 22.01 0.23 -3.56 16 4 C -0.06 -1.40 6.22 -19.55 -0.12 -1.52 16 5 C -0.09 -1.75 9.83 71.24 0.70 -1.05 16 6 C -0.09 -2.35 7.10 40.32 0.29 -2.06 16 7 C 0.53 16.12 7.93 69.97 0.55 16.68 16 8 O -0.52 -16.34 14.62 19.46 0.28 -16.06 16 9 O -0.35 -11.52 9.77 -51.67 -0.50 -12.03 16 10 C 0.06 1.90 5.96 71.24 0.42 2.32 16 11 C 0.50 20.27 7.91 87.66 0.69 20.96 16 12 O -0.58 -29.33 16.50 15.74 0.26 -29.07 16 13 N -0.70 -28.93 5.55 -466.78 -2.59 -31.52 16 14 C 0.27 14.43 5.43 85.63 0.46 14.90 16 15 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 16 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.01 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 19 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 N -0.53 -11.36 6.07 -172.32 -1.05 -12.41 16 24 H 0.43 8.73 8.96 -92.71 -0.83 7.90 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.06 1.42 6.51 -2.38 -0.02 1.41 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -75.35 330.95 3.20 -72.15 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.49 Total: 20.98 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 4.97 Total: 19.32 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.35 Total: -99.15 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: 0.04 Total: -57.16 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -75.35 3.20 -72.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252981907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.862 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds