Wall clock time and date at job start Tue Mar 31 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46505 * 109.47064 * 79.70763 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21348 * 120.00744 * 0.02562 * 9 8 7 11 11 C 1.49457 * 119.99493 * 180.02562 * 9 8 7 12 12 O 1.21347 * 120.00233 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99667 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99795 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47038 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47117 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99536 * 359.97438 * 16 15 14 18 18 C 1.37867 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31525 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47117 * 59.99472 * 20 18 16 22 22 H 1.48501 * 109.47421 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46905 * 299.99540 * 20 18 16 24 24 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 25 25 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 26 26 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 27 27 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 28 28 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 30 30 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 9 33 33 H 1.09001 * 109.46919 * 300.00467 * 14 13 11 34 34 H 1.08992 * 109.47069 * 60.00263 * 14 13 11 35 35 H 1.09001 * 109.46652 * 299.99966 * 15 14 13 36 36 H 1.08992 * 109.47514 * 59.99877 * 15 14 13 37 37 H 0.97000 * 119.99834 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4548 -2.9215 -1.3517 9 6 1.0122 -4.1717 -1.5911 10 8 0.9299 -4.9709 -0.6816 11 6 0.6228 -4.5739 -2.9768 12 8 0.7055 -3.7749 -3.8864 13 7 0.1806 -5.8244 -3.2164 14 6 -0.2017 -6.2185 -4.5747 15 6 -0.6645 -7.6768 -4.5713 16 6 -1.0572 -8.0824 -5.9686 17 1 -0.9843 -7.3710 -6.7779 18 6 -1.5094 -9.3615 -6.2137 19 7 -1.5976 -10.2280 -5.2282 20 14 -1.9968 -9.8641 -7.9456 21 1 -0.8290 -9.7167 -8.8509 22 1 -2.4459 -11.2796 -7.9424 23 1 -3.1038 -8.9953 -8.4200 24 1 -0.3634 0.0029 1.0277 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3634 -0.8915 -0.5113 27 1 4.4336 1.3755 -0.0102 28 1 4.5212 -1.2434 -0.0068 29 1 0.9796 -2.6346 0.6710 30 1 2.6489 -3.1658 0.3553 31 1 1.5210 -2.2828 -2.0786 32 1 0.1148 -6.4631 -2.4894 33 1 -1.0140 -5.5806 -4.9230 34 1 0.6555 -6.1105 -5.2391 35 1 0.1476 -8.3148 -4.2228 36 1 -1.5218 -7.7845 -3.9070 37 1 -1.9154 -11.1281 -5.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257560804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:30 Heat of formation + Delta-G solvation = -69.133278 kcal Electronic energy + Delta-G solvation = -20590.181263 eV Core-core repulsion = 17140.994594 eV Total energy + Delta-G solvation = -3449.186670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.99997 -40.36686 -38.30834 -35.95925 -34.99005 -33.13386 -32.76995 -32.22483 -29.82481 -28.32412 -26.25810 -25.16690 -23.17388 -21.85524 -21.02909 -20.37543 -20.03799 -18.38985 -17.16627 -16.88879 -16.51939 -16.17494 -15.91786 -15.24468 -14.95506 -14.73595 -14.51265 -14.33886 -13.80565 -13.41815 -13.34705 -13.11768 -13.06326 -12.74885 -12.52453 -12.31662 -11.95478 -11.52839 -11.24129 -11.04633 -10.68527 -10.38798 -10.24984 -9.78979 -9.45203 -9.36386 -9.21414 -8.74207 -8.69079 -8.41347 -6.09942 -4.13781 1.29771 1.62024 2.01047 2.62087 2.78175 3.30695 3.34916 3.37705 3.43637 3.97411 4.33542 4.37382 4.40956 4.52125 4.77451 4.90636 5.09900 5.14514 5.26785 5.30473 5.38826 5.41351 5.65577 5.84236 6.07186 6.12876 6.18535 6.24103 6.60027 6.69700 6.74859 7.07242 7.46937 7.58082 7.67115 7.87244 7.93137 8.21550 8.34632 8.91638 9.51099 11.01497 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044399 B = 0.002537 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.496388 B =11032.123445 C =11198.603854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.016 3.984 3 O -0.174 6.174 4 C -0.045 4.045 5 C -0.193 4.193 6 C -0.206 4.206 7 C 0.192 3.808 8 N -0.702 5.702 9 C 0.508 3.492 10 O -0.520 6.520 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.686 5.686 14 C 0.119 3.881 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.204 0.796 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 20.896 12.912 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 O -0.070 6.070 4 C -0.112 4.112 5 C -0.213 4.213 6 C -0.208 4.208 7 C 0.069 3.931 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.396 6.396 11 C 0.277 3.723 12 O -0.411 6.411 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.026 4.026 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.221 0.779 28 H 0.169 0.831 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.249 0.751 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.804 20.958 12.954 25.844 hybrid contribution 0.068 -0.497 -0.865 1.000 sum 7.872 20.461 12.089 25.035 Atomic orbital electron populations 1.20425 0.84771 1.04651 1.03936 1.22421 0.94104 0.83800 1.03235 1.84046 1.16997 1.34718 1.71241 1.23991 0.84198 0.95984 1.07025 1.21749 0.97554 0.94821 1.07150 1.20136 0.93407 0.95161 1.12097 1.19569 1.00578 0.89550 0.83404 1.45882 1.65372 1.13087 1.11357 1.20476 0.78271 0.82575 0.89825 1.90761 1.52193 1.50849 1.45747 1.19972 0.80028 0.83938 0.88409 1.90732 1.53798 1.51212 1.45408 1.46233 1.62084 1.11649 1.13707 1.21935 0.99439 0.99605 0.79319 1.19350 0.97113 0.87801 0.98362 1.20976 1.44475 0.97279 0.93540 0.92220 1.25002 0.95419 0.96493 0.97355 1.69955 1.46414 1.05302 1.31429 0.86552 0.79035 0.77479 0.84337 1.20100 1.21231 1.20101 0.89624 0.90094 0.88985 0.77903 0.83128 0.90136 0.90026 0.75067 0.75374 0.91868 0.91871 0.95660 0.95654 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.21 36.00 0.37 -0.16 16 2 C 0.02 0.14 7.32 -35.63 -0.26 -0.12 16 3 O -0.17 -1.58 10.65 5.71 0.06 -1.52 16 4 C -0.05 -0.33 12.09 29.41 0.36 0.03 16 5 C -0.19 -1.58 10.87 -39.70 -0.43 -2.02 16 6 C -0.21 -1.89 5.53 -104.74 -0.58 -2.47 16 7 C 0.19 1.89 5.68 -5.19 -0.03 1.86 16 8 N -0.70 -8.22 5.54 -61.90 -0.34 -8.57 16 9 C 0.51 7.53 7.89 -11.58 -0.09 7.44 16 10 O -0.52 -8.68 16.48 5.50 0.09 -8.58 16 11 C 0.50 8.54 7.89 -11.58 -0.09 8.45 16 12 O -0.53 -10.11 16.48 5.50 0.09 -10.02 16 13 N -0.69 -12.47 5.55 -60.73 -0.34 -12.81 16 14 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 15 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 27 H 0.20 0.72 8.06 -52.48 -0.42 0.30 16 28 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.41 4.65 7.94 -40.82 -0.32 4.33 16 32 H 0.41 7.11 7.94 -40.82 -0.32 6.79 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -32.19 332.64 -5.87 -38.07 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.83 Total: 5.10 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.34 Total: 2.46 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.06 Total: -46.75 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.24 Total: -20.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.19 -5.87 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257560804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.068 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds