Wall clock time and date at job start Tue Mar 31 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46505 * 109.47064 * 79.70763 * 7 6 2 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21348 * 120.00744 * 0.02562 * 9 8 7 11 11 C 1.49457 * 119.99493 * 180.02562 * 9 8 7 12 12 O 1.21347 * 120.00233 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99667 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99795 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47038 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47117 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99536 * 359.97438 * 16 15 14 18 18 C 1.37867 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31525 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47117 * 59.99472 * 20 18 16 22 22 H 1.48501 * 109.47421 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46905 * 299.99540 * 20 18 16 24 24 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 25 25 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 26 26 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 27 27 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 28 28 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 30 30 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 9 33 33 H 1.09001 * 109.46919 * 300.00467 * 14 13 11 34 34 H 1.08992 * 109.47069 * 60.00263 * 14 13 11 35 35 H 1.09001 * 109.46652 * 299.99966 * 15 14 13 36 36 H 1.08992 * 109.47514 * 59.99877 * 15 14 13 37 37 H 0.97000 * 119.99834 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4548 -2.9215 -1.3517 9 6 1.0122 -4.1717 -1.5911 10 8 0.9299 -4.9709 -0.6816 11 6 0.6228 -4.5739 -2.9768 12 8 0.7055 -3.7749 -3.8864 13 7 0.1806 -5.8244 -3.2164 14 6 -0.2017 -6.2185 -4.5747 15 6 -0.6645 -7.6768 -4.5713 16 6 -1.0572 -8.0824 -5.9686 17 1 -0.9843 -7.3710 -6.7779 18 6 -1.5094 -9.3615 -6.2137 19 7 -1.5976 -10.2280 -5.2282 20 14 -1.9968 -9.8641 -7.9456 21 1 -0.8290 -9.7167 -8.8509 22 1 -2.4459 -11.2796 -7.9424 23 1 -3.1038 -8.9953 -8.4200 24 1 -0.3634 0.0029 1.0277 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3634 -0.8915 -0.5113 27 1 4.4336 1.3755 -0.0102 28 1 4.5212 -1.2434 -0.0068 29 1 0.9796 -2.6346 0.6710 30 1 2.6489 -3.1658 0.3553 31 1 1.5210 -2.2828 -2.0786 32 1 0.1148 -6.4631 -2.4894 33 1 -1.0140 -5.5806 -4.9230 34 1 0.6555 -6.1105 -5.2391 35 1 0.1476 -8.3148 -4.2228 36 1 -1.5218 -7.7845 -3.9070 37 1 -1.9154 -11.1281 -5.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257560804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:30 Heat of formation + Delta-G solvation = -92.453467 kcal Electronic energy + Delta-G solvation = -20591.192502 eV Core-core repulsion = 17140.994594 eV Total energy + Delta-G solvation = -3450.197909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.62240 -41.67119 -39.65483 -37.10691 -36.46769 -34.85502 -33.85877 -32.78093 -31.69139 -29.18765 -27.40931 -26.52126 -24.62546 -22.80667 -22.47876 -21.50051 -20.93978 -19.57856 -18.57805 -17.91885 -17.82523 -17.19018 -17.14695 -16.53806 -16.43822 -16.07025 -15.95558 -15.30211 -14.92196 -14.77895 -14.33804 -14.29710 -13.82316 -13.67487 -13.57016 -13.27259 -13.25446 -12.92422 -12.85871 -12.59879 -12.54258 -12.26660 -11.68471 -11.45840 -11.00683 -10.60679 -10.60528 -10.38837 -10.19605 -9.35927 -8.22937 -6.34300 0.31449 0.64246 1.20840 1.43615 1.45982 1.53903 1.71478 2.07878 2.11500 2.41095 2.77156 3.11944 3.44427 3.68217 3.81110 3.87157 4.38238 4.39316 4.45640 4.48665 4.57125 4.64018 4.81696 4.82548 4.84589 5.02161 5.07360 5.08342 5.29349 5.42617 5.51779 5.55508 5.75763 5.91855 6.13339 6.14240 6.34643 6.68586 6.79685 6.92107 7.35272 8.88895 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044399 B = 0.002537 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.496388 B =11032.123445 C =11198.603854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.008 3.992 3 O -0.186 6.186 4 C -0.040 4.040 5 C -0.211 4.211 6 C -0.220 4.220 7 C 0.194 3.806 8 N -0.683 5.683 9 C 0.516 3.484 10 O -0.540 6.540 11 C 0.500 3.500 12 O -0.550 6.550 13 N -0.688 5.688 14 C 0.138 3.862 15 C 0.019 3.981 16 C -0.546 4.546 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.238 0.762 28 H 0.162 0.838 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.417 0.583 32 H 0.415 0.585 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.393 22.297 12.661 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 O -0.082 6.082 4 C -0.107 4.107 5 C -0.230 4.230 6 C -0.222 4.222 7 C 0.072 3.928 8 N -0.337 5.337 9 C 0.297 3.703 10 O -0.417 6.417 11 C 0.281 3.719 12 O -0.428 6.428 13 N -0.339 5.339 14 C 0.015 3.985 15 C -0.019 4.019 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.254 0.746 28 H 0.179 0.821 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.254 0.746 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.238 22.404 12.717 27.047 hybrid contribution -0.010 -0.843 -0.729 1.115 sum 8.228 21.561 11.987 26.005 Atomic orbital electron populations 1.20504 0.83601 1.04841 1.04898 1.22778 0.94984 0.83716 1.02850 1.84061 1.17813 1.34969 1.71355 1.24683 0.84323 0.96350 1.05301 1.21996 0.97583 0.95583 1.07881 1.20139 0.94185 0.94649 1.13245 1.19652 1.00842 0.90238 0.82052 1.45871 1.63538 1.11797 1.12468 1.19931 0.78742 0.83405 0.88266 1.90765 1.53578 1.51624 1.45732 1.20331 0.79059 0.83100 0.89407 1.90721 1.54298 1.51514 1.46309 1.46067 1.62611 1.12456 1.12763 1.21481 0.99173 0.97060 0.80782 1.19171 0.95759 0.89960 0.96980 1.21427 1.44433 0.97755 0.94798 0.91693 1.25920 0.95310 0.96535 1.01633 1.70075 1.47318 1.05716 1.33687 0.85459 0.79013 0.77161 0.79175 1.19199 1.20868 1.19159 0.88268 0.89212 0.89434 0.74587 0.82059 0.89546 0.89923 0.74600 0.74877 0.91954 0.92072 0.97435 0.97350 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.21 71.24 0.73 -0.23 16 2 C 0.01 0.13 7.32 24.83 0.18 0.32 16 3 O -0.19 -3.06 10.65 -2.47 -0.03 -3.08 16 4 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 5 C -0.21 -3.12 10.87 22.19 0.24 -2.88 16 6 C -0.22 -3.74 5.53 -19.94 -0.11 -3.85 16 7 C 0.19 3.60 5.68 85.63 0.49 4.09 16 8 N -0.68 -15.23 5.54 -468.12 -2.59 -17.83 16 9 C 0.52 14.91 7.89 87.27 0.69 15.60 16 10 O -0.54 -17.64 16.48 -3.24 -0.05 -17.69 16 11 C 0.50 16.90 7.89 87.27 0.69 17.59 16 12 O -0.55 -20.39 16.48 -3.24 -0.05 -20.44 16 13 N -0.69 -24.99 5.55 -464.40 -2.58 -27.56 16 14 C 0.14 5.76 5.61 86.38 0.48 6.25 16 15 C 0.02 0.95 5.09 29.85 0.15 1.10 16 16 C -0.55 -30.09 9.11 25.60 0.23 -29.86 16 17 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 18 C 0.00 0.27 5.46 84.65 0.46 0.73 16 19 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 20 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.09 1.09 7.87 -2.39 -0.02 1.08 16 27 H 0.24 0.98 8.06 -2.91 -0.02 0.95 16 28 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.42 8.87 7.94 -92.71 -0.74 8.14 16 32 H 0.41 14.49 7.94 -92.71 -0.74 13.75 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.74 332.64 1.69 -66.06 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.37 Total: 20.67 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.04 Total: 9.16 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.89 Total: -99.98 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.13 Total: -41.21 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.74 1.69 -66.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257560804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.397 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds