Wall clock time and date at job start Tue Mar 31 2020 02:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41376 * 126.80058 * 2 1 4 4 C 1.35450 * 103.98563 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77533 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.54563 * 158.61283 * 5 4 3 7 7 C 1.34776 * 119.99759 * 301.25180 * 6 5 4 8 8 O 1.21692 * 120.00013 * 4.99495 * 7 6 5 9 9 C 1.46373 * 120.00196 * 184.98612 * 7 6 5 10 10 H 1.07998 * 119.99806 * 0.02562 * 9 7 6 11 11 C 1.40046 * 120.00254 * 179.97438 * 9 7 6 12 12 N 1.30676 * 119.99907 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00065 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47184 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47047 * 119.99929 * 13 11 9 16 16 H 1.48495 * 109.47188 * 239.99920 * 13 11 9 17 17 C 1.53196 * 109.54468 * 38.34674 * 5 4 3 18 18 C 1.53091 * 109.15145 * 183.15524 * 17 5 4 19 19 O 1.42902 * 109.42075 * 57.61138 * 18 17 5 20 20 C 1.42905 * 114.09500 * 298.82650 * 19 18 17 21 21 C 1.53095 * 109.41064 * 61.16535 * 20 19 18 22 22 O 1.34038 * 106.44810 * 0.23872 * 4 3 2 23 23 N 1.20923 * 111.56453 * 359.56487 * 22 4 3 24 24 H 1.08994 * 109.47229 * 90.00524 * 1 2 3 25 25 H 1.09004 * 109.46703 * 210.00212 * 1 2 3 26 26 H 1.09003 * 109.47359 * 329.99610 * 1 2 3 27 27 H 1.08000 * 128.00818 * 359.96452 * 3 2 1 28 28 H 0.97001 * 120.00266 * 121.24684 * 6 5 4 29 29 H 0.97001 * 119.99692 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.53628 * 63.25465 * 17 5 4 31 31 H 1.08995 * 109.52423 * 303.05710 * 17 5 4 32 32 H 1.08995 * 109.48659 * 297.61681 * 18 17 5 33 33 H 1.09004 * 109.48246 * 177.59132 * 18 17 5 34 34 H 1.09007 * 109.48107 * 181.14173 * 20 19 18 35 35 H 1.08991 * 109.48646 * 301.17150 * 20 19 18 36 36 H 1.09004 * 109.52120 * 62.29393 * 21 20 19 37 37 H 1.09000 * 109.52142 * 182.42340 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 7 5.9754 0.5094 0.5046 7 6 5.8881 -0.0233 1.7395 8 8 4.8786 0.1350 2.4004 9 6 7.0073 -0.7924 2.2857 10 1 7.9033 -0.9327 1.6993 11 6 6.9167 -1.3455 3.5691 12 7 5.8328 -1.1754 4.2789 13 14 8.3454 -2.3264 4.2664 14 1 9.4470 -2.3718 3.2716 15 1 8.8299 -1.6782 5.5115 16 1 7.8952 -3.7084 4.5707 17 6 4.7708 2.6061 0.8951 18 6 6.0682 3.4159 0.8263 19 8 6.3329 3.7748 -0.5313 20 6 6.5122 2.6585 -1.4055 21 6 5.2327 1.8182 -1.4266 22 8 3.4538 -0.7253 -0.0045 23 7 2.2869 -1.0423 0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 2.0709 2.1743 -0.0005 28 1 6.7489 0.3231 -0.0504 29 1 5.7702 -1.5582 5.1680 30 1 4.5904 2.2941 1.9239 31 1 3.9395 3.2200 0.5486 32 1 6.8925 2.8154 1.2110 33 1 5.9652 4.3193 1.4275 34 1 6.7287 3.0163 -2.4122 35 1 7.3423 2.0482 -1.0502 36 1 4.4106 2.4161 -1.8201 37 1 5.3820 0.9431 -2.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261838074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:11 Heat of formation + Delta-G solvation = -24.449684 kcal Electronic energy + Delta-G solvation = -23206.454280 eV Core-core repulsion = 19759.205236 eV Total energy + Delta-G solvation = -3447.249044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.22522 -39.71247 -37.03230 -34.71803 -34.14730 -32.47603 -31.22564 -30.84860 -29.94609 -28.23440 -26.36868 -24.62032 -23.48943 -22.47028 -20.70396 -20.19808 -18.45319 -17.49576 -16.95544 -16.73854 -15.85694 -15.69608 -15.34840 -14.88354 -14.58508 -14.18360 -13.72008 -13.40957 -13.10987 -12.93021 -12.65827 -12.54635 -12.43552 -12.15783 -11.92646 -11.77769 -11.14954 -11.11790 -11.03409 -10.75403 -10.57985 -10.49839 -10.24223 -10.13894 -9.44072 -9.36609 -8.91934 -8.74496 -7.79223 -7.60549 -6.23215 -4.69442 2.15846 2.77930 3.10705 3.19396 3.23174 3.64846 4.03585 4.09827 4.48518 4.56699 4.69034 4.88281 4.93568 5.12564 5.16662 5.37934 5.42132 5.62639 5.64197 5.69164 5.72111 5.76941 5.81379 5.88052 5.92984 6.02531 6.09022 6.23236 6.28532 6.37046 6.60488 6.63796 7.38643 7.40360 7.74555 7.92459 8.24370 8.94431 8.98158 9.39233 10.52699 10.70724 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.007651 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.898902 B = 3658.689511 C = 5046.101298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.004 3.996 3 C -0.253 4.253 4 C 0.020 3.980 5 C 0.265 3.735 6 N -0.758 5.758 7 C 0.557 3.443 8 O -0.565 6.565 9 C -0.541 4.541 10 H 0.068 0.932 11 C 0.089 3.911 12 N -0.763 5.763 13 Si 0.906 3.094 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.155 4.155 18 C 0.067 3.933 19 O -0.387 6.387 20 C 0.066 3.934 21 C -0.154 4.154 22 O 0.121 5.879 23 N -0.375 5.375 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.384 0.616 29 H 0.268 0.732 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 7.178 -9.869 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.154 4.154 3 C -0.275 4.275 4 C -0.046 4.046 5 C 0.175 3.825 6 N -0.415 5.415 7 C 0.362 3.638 8 O -0.447 6.447 9 C -0.578 4.578 10 H 0.086 0.914 11 C -0.131 4.131 12 N -0.392 5.392 13 Si 0.731 3.269 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.193 4.193 18 C -0.009 4.009 19 O -0.306 6.306 20 C -0.011 4.011 21 C -0.192 4.192 22 O 0.055 5.945 23 N -0.079 5.079 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.179 0.821 28 H 0.217 0.783 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.218 6.113 -9.234 11.533 hybrid contribution 0.806 -0.141 0.346 0.888 sum -2.413 5.972 -8.888 10.977 Atomic orbital electron populations 1.20046 0.86754 1.03285 1.02462 1.23403 0.98492 0.89263 1.04290 1.22123 0.91248 1.00416 1.13724 1.24746 0.97786 0.83755 0.98321 1.18318 0.82454 0.88396 0.93304 1.46475 1.21679 1.54043 1.19258 1.18219 0.88429 0.78942 0.78253 1.90610 1.32452 1.62859 1.58775 1.20862 1.01140 1.34878 1.00937 0.91390 1.25679 0.95965 0.94909 0.96581 1.70021 1.25363 1.34660 1.09144 0.86339 0.81721 0.79633 0.79227 1.18746 1.20194 1.20185 1.22561 0.98471 0.94813 1.03493 1.22559 0.96650 0.99288 0.82446 1.87863 1.91944 1.31404 1.19399 1.22510 0.95687 0.88388 0.94544 1.22484 1.00248 1.01095 0.95379 1.84841 1.20713 1.22701 1.66218 1.73777 0.89779 1.24413 1.19889 0.90882 0.91015 0.90544 0.82133 0.78269 0.92158 0.87781 0.91338 0.91843 0.89031 0.88846 0.92496 0.89885 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.47 36.01 0.38 -0.53 16 2 C 0.00 0.07 7.33 -82.10 -0.60 -0.53 16 3 C -0.25 -4.54 10.30 -39.38 -0.41 -4.94 16 4 C 0.02 0.40 4.57 -35.30 -0.16 0.24 16 5 C 0.27 4.76 0.62 -132.77 -0.08 4.68 16 6 N -0.76 -15.61 4.16 -49.89 -0.21 -15.82 16 7 C 0.56 14.72 6.90 -12.99 -0.09 14.63 16 8 O -0.57 -16.95 12.19 4.65 0.06 -16.89 16 9 C -0.54 -14.66 9.54 -35.63 -0.34 -15.00 16 10 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 11 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 12 N -0.76 -22.42 11.83 55.55 0.66 -21.76 16 13 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16 14 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.15 -2.71 4.49 -26.58 -0.12 -2.83 16 18 C 0.07 1.05 6.68 37.20 0.25 1.30 16 19 O -0.39 -5.71 10.77 -35.23 -0.38 -6.08 16 20 C 0.07 0.82 6.67 37.21 0.25 1.07 16 21 C -0.15 -2.09 4.95 -26.59 -0.13 -2.22 16 22 O 0.12 2.80 10.59 16.63 0.18 2.98 16 23 N -0.37 -8.27 12.07 33.42 0.40 -7.87 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.16 2.36 7.56 -52.49 -0.40 1.96 16 28 H 0.38 6.96 7.47 -40.82 -0.31 6.66 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 30 H 0.10 2.25 6.40 -51.93 -0.33 1.92 16 31 H 0.07 1.05 7.34 -51.93 -0.38 0.67 16 32 H 0.06 1.10 7.75 -51.93 -0.40 0.70 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.71 7.08 -51.93 -0.37 0.35 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -34.22 307.24 -5.53 -39.75 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.69 Total: 8.00 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.15 Total: -1.81 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.85 Total: -45.45 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.15 Total: -19.99 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.22 -5.53 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261838074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.305 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds