Wall clock time and date at job start Tue Mar 31 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41376 * 126.80058 * 2 1 4 4 C 1.35450 * 103.98563 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77533 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.54563 * 158.61283 * 5 4 3 7 7 C 1.34776 * 119.99759 * 301.25180 * 6 5 4 8 8 O 1.21692 * 120.00013 * 4.99495 * 7 6 5 9 9 C 1.46373 * 120.00196 * 184.98612 * 7 6 5 10 10 H 1.07998 * 119.99806 * 0.02562 * 9 7 6 11 11 C 1.40046 * 120.00254 * 179.97438 * 9 7 6 12 12 N 1.30676 * 119.99907 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00065 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47184 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47047 * 119.99929 * 13 11 9 16 16 H 1.48495 * 109.47188 * 239.99920 * 13 11 9 17 17 C 1.53196 * 109.54468 * 38.34674 * 5 4 3 18 18 C 1.53091 * 109.15145 * 183.15524 * 17 5 4 19 19 O 1.42902 * 109.42075 * 57.61138 * 18 17 5 20 20 C 1.42905 * 114.09500 * 298.82650 * 19 18 17 21 21 C 1.53095 * 109.41064 * 61.16535 * 20 19 18 22 22 O 1.34038 * 106.44810 * 0.23872 * 4 3 2 23 23 N 1.20923 * 111.56453 * 359.56487 * 22 4 3 24 24 H 1.08994 * 109.47229 * 90.00524 * 1 2 3 25 25 H 1.09004 * 109.46703 * 210.00212 * 1 2 3 26 26 H 1.09003 * 109.47359 * 329.99610 * 1 2 3 27 27 H 1.08000 * 128.00818 * 359.96452 * 3 2 1 28 28 H 0.97001 * 120.00266 * 121.24684 * 6 5 4 29 29 H 0.97001 * 119.99692 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.53628 * 63.25465 * 17 5 4 31 31 H 1.08995 * 109.52423 * 303.05710 * 17 5 4 32 32 H 1.08995 * 109.48659 * 297.61681 * 18 17 5 33 33 H 1.09004 * 109.48246 * 177.59132 * 18 17 5 34 34 H 1.09007 * 109.48107 * 181.14173 * 20 19 18 35 35 H 1.08991 * 109.48646 * 301.17150 * 20 19 18 36 36 H 1.09004 * 109.52120 * 62.29393 * 21 20 19 37 37 H 1.09000 * 109.52142 * 182.42340 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 7 5.9754 0.5094 0.5046 7 6 5.8881 -0.0233 1.7395 8 8 4.8786 0.1350 2.4004 9 6 7.0073 -0.7924 2.2857 10 1 7.9033 -0.9327 1.6993 11 6 6.9167 -1.3455 3.5691 12 7 5.8328 -1.1754 4.2789 13 14 8.3454 -2.3264 4.2664 14 1 9.4470 -2.3718 3.2716 15 1 8.8299 -1.6782 5.5115 16 1 7.8952 -3.7084 4.5707 17 6 4.7708 2.6061 0.8951 18 6 6.0682 3.4159 0.8263 19 8 6.3329 3.7748 -0.5313 20 6 6.5122 2.6585 -1.4055 21 6 5.2327 1.8182 -1.4266 22 8 3.4538 -0.7253 -0.0045 23 7 2.2869 -1.0423 0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 2.0709 2.1743 -0.0005 28 1 6.7489 0.3231 -0.0504 29 1 5.7702 -1.5582 5.1680 30 1 4.5904 2.2941 1.9239 31 1 3.9395 3.2200 0.5486 32 1 6.8925 2.8154 1.2110 33 1 5.9652 4.3193 1.4275 34 1 6.7287 3.0163 -2.4122 35 1 7.3423 2.0482 -1.0502 36 1 4.4106 2.4161 -1.8201 37 1 5.3820 0.9431 -2.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261838074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:10 Heat of formation + Delta-G solvation = -49.815181 kcal Electronic energy + Delta-G solvation = -23207.554210 eV Core-core repulsion = 19759.205236 eV Total energy + Delta-G solvation = -3448.348974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.73505 -41.10434 -38.74948 -36.28001 -35.59242 -34.53644 -32.87184 -32.10750 -31.40042 -29.48340 -28.34123 -26.01875 -24.73921 -23.89365 -22.50036 -21.56383 -20.00299 -19.33715 -18.46205 -18.29898 -17.43944 -17.13388 -16.86280 -16.31611 -15.93091 -15.89353 -15.14055 -14.79059 -14.52718 -14.21129 -14.09147 -14.02090 -13.85232 -13.56660 -13.33861 -13.26836 -12.87523 -12.81503 -12.58587 -12.34209 -12.09565 -11.98746 -11.89713 -11.39470 -10.95190 -10.86712 -10.58362 -10.30827 -9.70187 -9.55105 -8.27258 -6.82847 0.63674 1.36810 1.37648 1.38837 1.55085 2.15355 2.26172 2.50852 2.88564 3.03722 3.39259 3.46313 3.69155 3.72194 3.90022 4.01208 4.05438 4.28147 4.35715 4.41155 4.56435 4.60361 4.67147 4.68633 4.81366 4.85203 4.89222 4.96615 5.03854 5.11141 5.16042 5.32440 5.33143 5.88264 6.15731 6.23561 6.25203 6.89595 7.41767 7.52502 8.51785 8.69955 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.007651 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.898902 B = 3658.689511 C = 5046.101298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.008 3.992 3 C -0.251 4.251 4 C 0.001 3.999 5 C 0.258 3.742 6 N -0.746 5.746 7 C 0.550 3.450 8 O -0.607 6.607 9 C -0.571 4.571 10 H 0.084 0.916 11 C 0.033 3.967 12 N -0.818 5.818 13 Si 0.989 3.011 14 H -0.246 1.246 15 H -0.268 1.268 16 H -0.275 1.275 17 C -0.149 4.149 18 C 0.076 3.924 19 O -0.386 6.386 20 C 0.062 3.938 21 C -0.144 4.144 22 O 0.074 5.926 23 N -0.416 5.416 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.195 0.805 28 H 0.396 0.604 29 H 0.271 0.729 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 8.437 -11.543 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.151 4.151 3 C -0.273 4.273 4 C -0.064 4.064 5 C 0.169 3.831 6 N -0.402 5.402 7 C 0.354 3.646 8 O -0.492 6.492 9 C -0.608 4.608 10 H 0.102 0.898 11 C -0.182 4.182 12 N -0.448 5.448 13 Si 0.809 3.191 14 H -0.169 1.169 15 H -0.193 1.193 16 H -0.200 1.200 17 C -0.188 4.188 18 C -0.001 4.001 19 O -0.305 6.305 20 C -0.014 4.014 21 C -0.182 4.182 22 O 0.015 5.985 23 N -0.127 5.127 24 H 0.120 0.880 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.212 0.788 28 H 0.231 0.769 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.678 7.402 -10.970 13.502 hybrid contribution 0.563 -0.468 0.786 1.074 sum -2.115 6.934 -10.184 12.501 Atomic orbital electron populations 1.20286 0.83194 1.04365 1.04639 1.24306 1.00727 0.88624 1.01393 1.22597 0.90251 1.01845 1.12559 1.25307 0.99489 0.83214 0.98432 1.18742 0.80789 0.87619 0.95990 1.46054 1.22801 1.53567 1.17752 1.18362 0.87768 0.78843 0.79587 1.90574 1.33817 1.64212 1.60577 1.21422 1.02095 1.35418 1.01853 0.89790 1.26831 0.98936 0.95683 0.96787 1.70189 1.28271 1.36547 1.09813 0.85091 0.77881 0.77407 0.78687 1.16923 1.19340 1.20038 1.22475 1.00484 0.95168 1.00636 1.22414 0.94722 0.99354 0.83590 1.87876 1.91753 1.32161 1.18662 1.22760 0.94845 0.87908 0.95912 1.22500 1.01542 1.01935 0.92216 1.84770 1.21532 1.24272 1.67941 1.73763 0.89986 1.26285 1.22664 0.88010 0.91312 0.88049 0.78799 0.76900 0.91948 0.92521 0.88847 0.94137 0.87277 0.85069 0.92761 0.87936 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.47 71.24 0.75 -0.92 16 2 C 0.01 0.31 7.33 43.58 0.32 0.63 16 3 C -0.25 -8.73 10.30 22.40 0.23 -8.49 16 4 C 0.00 0.04 4.57 25.04 0.11 0.15 16 5 C 0.26 9.14 0.62 2.98 0.00 9.14 16 6 N -0.75 -31.24 4.16 -429.98 -1.79 -33.03 16 7 C 0.55 30.21 6.90 86.36 0.60 30.80 16 8 O -0.61 -38.23 12.19 -3.80 -0.05 -38.28 16 9 C -0.57 -31.68 9.54 24.83 0.24 -31.44 16 10 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 11 C 0.03 1.82 5.50 85.30 0.47 2.29 16 12 N -0.82 -50.04 11.83 21.84 0.26 -49.78 16 13 Si 0.99 41.34 29.56 68.60 2.03 43.37 16 14 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 15 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 17 C -0.15 -5.16 4.49 30.69 0.14 -5.02 16 18 C 0.08 2.31 6.68 72.01 0.48 2.80 16 19 O -0.39 -10.29 10.77 -148.98 -1.60 -11.90 16 20 C 0.06 1.37 6.67 72.01 0.48 1.85 16 21 C -0.14 -3.56 4.95 30.69 0.15 -3.40 16 22 O 0.07 3.54 10.59 72.18 0.76 4.31 16 23 N -0.42 -18.86 12.07 -49.55 -0.60 -19.45 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.19 5.15 7.56 -2.91 -0.02 5.13 16 28 H 0.40 14.38 7.47 -92.71 -0.69 13.69 16 29 H 0.27 15.17 8.29 -92.71 -0.77 14.40 16 30 H 0.06 2.54 6.40 -2.38 -0.02 2.53 16 31 H 0.09 2.70 7.34 -2.39 -0.02 2.69 16 32 H 0.04 1.41 7.75 -2.39 -0.02 1.39 16 33 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 1.24 7.08 -2.39 -0.02 1.22 16 36 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.29 307.24 3.39 -75.90 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.41 Total: 30.49 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 3.97 Total: -1.63 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -2.13 Total: -102.26 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.89 Total: -45.87 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -79.29 3.39 -75.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261838074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.081 kcal (2) G-P(sol) polarization free energy of solvation -79.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds