Wall clock time and date at job start Tue Mar 31 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30258 * 125.61768 * 2 1 4 4 C 1.34479 * 108.69924 * 179.97438 * 3 2 1 5 5 C 1.34327 * 107.66866 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.44295 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47154 * 89.99690 * 6 5 4 8 8 O 1.21278 * 120.00367 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64643 * 359.95647 * 9 7 6 11 11 C 1.54911 * 104.83215 * 204.16415 * 10 9 7 12 12 C 1.55159 * 101.58491 * 322.99346 * 11 10 9 13 13 O 1.42907 * 110.71802 * 277.14082 * 12 11 10 14 14 C 1.50698 * 110.87503 * 153.93477 * 12 11 10 15 15 H 1.07990 * 119.99764 * 5.03803 * 14 12 11 16 16 C 1.37873 * 119.99831 * 185.03542 * 14 12 11 17 17 N 1.31517 * 120.00017 * 184.92208 * 16 14 12 18 18 Si 1.86802 * 120.00218 * 4.92285 * 16 14 12 19 19 H 1.48492 * 109.47424 * 84.75429 * 18 16 14 20 20 H 1.48507 * 109.47330 * 204.75478 * 18 16 14 21 21 H 1.48501 * 109.47218 * 324.74985 * 18 16 14 22 22 C 1.47023 * 125.64914 * 180.02562 * 9 7 6 23 23 O 1.33973 * 125.62248 * 180.29671 * 2 1 3 24 24 H 1.08998 * 109.47610 * 90.02235 * 1 2 3 25 25 H 1.08998 * 109.46896 * 210.02248 * 1 2 3 26 26 H 1.09000 * 109.46925 * 330.01807 * 1 2 3 27 27 H 1.08000 * 126.16298 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.46924 * 329.99670 * 6 5 4 29 29 H 1.08999 * 109.46704 * 210.00060 * 6 5 4 30 30 H 1.08994 * 110.36629 * 323.00399 * 10 9 7 31 31 H 1.09001 * 110.36543 * 85.22265 * 10 9 7 32 32 H 1.09001 * 111.00167 * 204.91943 * 11 10 9 33 33 H 1.09004 * 111.00548 * 81.06624 * 11 10 9 34 34 H 0.96704 * 113.99809 * 293.51667 * 13 12 11 35 35 H 0.96994 * 119.99903 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.88534 * 59.49065 * 22 9 7 37 37 H 1.09004 * 109.87983 * 298.31716 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5697 -0.6756 0.0004 6 6 4.7937 -1.5549 0.0014 7 6 5.2004 -1.8482 1.4224 8 8 4.5593 -1.3889 2.3438 9 7 6.2766 -2.6208 1.6696 10 6 7.1412 -3.2415 0.6494 11 6 7.7842 -4.4578 1.3613 12 6 8.0080 -3.8993 2.7915 13 8 9.2192 -3.1436 2.8554 14 6 8.0224 -5.0130 3.8067 15 1 7.9684 -6.0412 3.4811 16 6 8.1046 -4.7190 5.1512 17 7 8.2148 -5.6902 6.0312 18 14 8.0594 -2.9413 5.7232 19 1 6.6479 -2.4987 5.8529 20 1 8.7368 -2.8275 7.0399 21 1 8.7578 -2.0844 4.7316 22 6 6.7821 -2.9856 3.0012 23 8 2.2873 -1.0890 -0.0056 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 4.4156 1.3163 0.0011 28 1 5.6085 -1.0440 -0.5117 29 1 4.5700 -2.4896 -0.5129 30 1 6.5463 -3.5713 -0.2022 31 1 7.9097 -2.5397 0.3255 32 1 8.7316 -4.7277 0.8947 33 1 7.1017 -5.3076 1.3761 34 1 10.0194 -3.6718 2.7297 35 1 8.2730 -5.4834 6.9770 36 1 6.0116 -3.5204 3.5565 37 1 7.0777 -2.0878 3.5441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262174821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:56 Heat of formation + Delta-G solvation = -49.286561 kcal Electronic energy + Delta-G solvation = -22014.193981 eV Core-core repulsion = 18565.867929 eV Total energy + Delta-G solvation = -3448.326051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.35518 -39.75889 -37.65895 -34.76992 -34.64966 -33.21561 -32.48138 -30.93799 -29.96016 -28.66165 -26.34950 -24.66440 -22.94510 -22.36092 -21.19728 -19.88299 -19.23737 -17.35892 -17.30368 -16.96137 -16.38478 -15.90746 -15.43698 -14.86212 -14.64792 -14.35811 -14.04060 -13.87024 -13.29522 -13.17177 -13.07134 -12.82024 -12.76305 -12.54389 -12.23353 -11.97333 -11.85772 -11.46199 -11.28222 -11.00137 -10.69549 -10.59076 -10.33979 -10.21788 -9.74101 -9.14098 -8.79562 -8.70603 -8.53350 -8.24475 -6.28703 -4.41698 1.36677 2.51299 2.64533 2.80875 3.26292 3.36598 3.46517 3.57477 3.97599 4.37003 4.52852 4.67978 4.86176 4.93511 5.02011 5.09232 5.13599 5.15497 5.18409 5.32673 5.40075 5.50643 5.61795 5.75574 5.87011 5.96182 6.02221 6.28942 6.40884 6.46366 6.53742 6.65850 6.98300 7.40205 7.67845 7.82579 8.12021 8.36845 8.66932 8.83496 9.34018 10.81347 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.004319 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.089468 B = 6481.124010 C = 6857.955691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.186 3.814 3 N -0.485 5.485 4 C -0.027 4.027 5 C -0.022 4.022 6 C -0.051 4.051 7 C 0.521 3.479 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.145 4.145 12 C 0.216 3.784 13 O -0.574 6.574 14 C -0.555 4.555 15 H 0.082 0.918 16 C 0.091 3.909 17 N -0.883 5.883 18 Si 0.862 3.138 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.229 1.229 22 C 0.112 3.888 23 O -0.196 6.196 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.182 0.818 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.368 0.632 35 H 0.268 0.732 36 H 0.084 0.916 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 7.294 -15.678 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.021 4.021 3 N -0.215 5.215 4 C -0.166 4.166 5 C -0.075 4.075 6 C -0.091 4.091 7 C 0.308 3.692 8 O -0.416 6.416 9 N -0.342 5.342 10 C -0.025 4.025 11 C -0.183 4.183 12 C 0.176 3.824 13 O -0.381 6.381 14 C -0.592 4.592 15 H 0.100 0.900 16 C -0.115 4.115 17 N -0.518 5.518 18 Si 0.689 3.311 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.152 1.152 22 C -0.010 4.010 23 O -0.083 6.083 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.199 0.801 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.215 0.785 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.593 8.592 -14.910 19.235 hybrid contribution 0.727 -0.378 0.444 0.932 sum -7.866 8.214 -14.467 18.402 Atomic orbital electron populations 1.20230 0.81414 1.05179 1.04416 1.26224 0.96412 0.78702 1.00756 1.70405 1.02054 1.30326 1.18669 1.22951 0.95094 0.92754 1.05763 1.22520 0.83130 0.94841 1.07029 1.20055 0.91985 1.00502 0.96604 1.19885 0.79979 0.78859 0.90465 1.90740 1.52936 1.51687 1.46233 1.48639 1.27240 1.48785 1.09563 1.22421 0.93353 0.95746 0.90985 1.23313 1.00875 0.96354 0.97777 1.19945 0.82047 0.88381 0.92061 1.86478 1.16126 1.40214 1.95264 1.21200 1.54651 0.93112 0.90236 0.90044 1.24970 0.92300 0.97594 0.96618 1.69910 1.47090 1.32534 1.02309 0.87249 0.79113 0.86276 0.78452 1.20466 1.22113 1.15155 1.22657 0.96624 0.98761 0.82927 1.84349 1.16515 1.37744 1.69726 0.89084 0.89340 0.88177 0.80069 0.85655 0.86943 0.91415 0.91224 0.90393 0.90167 0.78478 0.92178 0.89806 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.19 2.48 8.34 -12.95 -0.11 2.37 16 3 N -0.48 -7.29 11.29 -11.10 -0.13 -7.41 16 4 C -0.03 -0.39 11.80 -17.77 -0.21 -0.60 16 5 C -0.02 -0.31 5.88 -35.68 -0.21 -0.52 16 6 C -0.05 -0.64 5.26 -29.03 -0.15 -0.79 16 7 C 0.52 9.32 7.84 -10.99 -0.09 9.23 16 8 O -0.54 -12.14 16.36 5.56 0.09 -12.05 16 9 N -0.61 -11.11 3.33 -170.52 -0.57 -11.67 16 10 C 0.10 1.39 6.68 -2.53 -0.02 1.37 16 11 C -0.14 -2.42 6.23 -24.58 -0.15 -2.57 16 12 C 0.22 4.64 0.69 -89.93 -0.06 4.57 16 13 O -0.57 -11.93 10.55 -35.23 -0.37 -12.31 16 14 C -0.55 -14.41 8.70 -34.44 -0.30 -14.71 16 15 H 0.08 2.26 8.03 -52.49 -0.42 1.84 16 16 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 17 N -0.88 -25.96 13.96 55.43 0.77 -25.18 16 18 Si 0.86 21.69 23.98 -169.99 -4.08 17.61 16 19 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.23 -5.61 5.36 56.52 0.30 -5.31 16 22 C 0.11 2.50 4.38 -3.06 -0.01 2.48 16 23 O -0.20 -2.93 10.78 5.37 0.06 -2.87 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.18 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.11 1.13 7.85 -51.93 -0.41 0.72 16 30 H 0.07 0.72 7.48 -51.93 -0.39 0.34 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 34 H 0.37 6.47 9.07 45.56 0.41 6.88 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 2.06 7.61 -51.93 -0.40 1.66 16 37 H 0.06 1.49 5.59 -51.93 -0.29 1.20 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -35.58 310.49 -4.67 -40.25 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.10 Total: 5.74 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.03 Total: 3.21 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.08 Total: -44.27 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.22 Total: -27.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.08 Total: 17.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.58 -4.67 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262174821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.033 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds