Wall clock time and date at job start Tue Mar 31 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30258 * 125.61768 * 2 1 4 4 C 1.34479 * 108.69924 * 179.97438 * 3 2 1 5 5 C 1.34327 * 107.66866 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.44295 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47154 * 89.99690 * 6 5 4 8 8 O 1.21278 * 120.00367 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64643 * 359.95647 * 9 7 6 11 11 C 1.54911 * 104.83215 * 204.16415 * 10 9 7 12 12 C 1.55159 * 101.58491 * 322.99346 * 11 10 9 13 13 O 1.42907 * 110.71802 * 277.14082 * 12 11 10 14 14 C 1.50698 * 110.87503 * 153.93477 * 12 11 10 15 15 H 1.07990 * 119.99764 * 5.03803 * 14 12 11 16 16 C 1.37873 * 119.99831 * 185.03542 * 14 12 11 17 17 N 1.31517 * 120.00017 * 184.92208 * 16 14 12 18 18 Si 1.86802 * 120.00218 * 4.92285 * 16 14 12 19 19 H 1.48492 * 109.47424 * 84.75429 * 18 16 14 20 20 H 1.48507 * 109.47330 * 204.75478 * 18 16 14 21 21 H 1.48501 * 109.47218 * 324.74985 * 18 16 14 22 22 C 1.47023 * 125.64914 * 180.02562 * 9 7 6 23 23 O 1.33973 * 125.62248 * 180.29671 * 2 1 3 24 24 H 1.08998 * 109.47610 * 90.02235 * 1 2 3 25 25 H 1.08998 * 109.46896 * 210.02248 * 1 2 3 26 26 H 1.09000 * 109.46925 * 330.01807 * 1 2 3 27 27 H 1.08000 * 126.16298 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.46924 * 329.99670 * 6 5 4 29 29 H 1.08999 * 109.46704 * 210.00060 * 6 5 4 30 30 H 1.08994 * 110.36629 * 323.00399 * 10 9 7 31 31 H 1.09001 * 110.36543 * 85.22265 * 10 9 7 32 32 H 1.09001 * 111.00167 * 204.91943 * 11 10 9 33 33 H 1.09004 * 111.00548 * 81.06624 * 11 10 9 34 34 H 0.96704 * 113.99809 * 293.51667 * 13 12 11 35 35 H 0.96994 * 119.99903 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.88534 * 59.49065 * 22 9 7 37 37 H 1.09004 * 109.87983 * 298.31716 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5697 -0.6756 0.0004 6 6 4.7937 -1.5549 0.0014 7 6 5.2004 -1.8482 1.4224 8 8 4.5593 -1.3889 2.3438 9 7 6.2766 -2.6208 1.6696 10 6 7.1412 -3.2415 0.6494 11 6 7.7842 -4.4578 1.3613 12 6 8.0080 -3.8993 2.7915 13 8 9.2192 -3.1436 2.8554 14 6 8.0224 -5.0130 3.8067 15 1 7.9684 -6.0412 3.4811 16 6 8.1046 -4.7190 5.1512 17 7 8.2148 -5.6902 6.0312 18 14 8.0594 -2.9413 5.7232 19 1 6.6479 -2.4987 5.8529 20 1 8.7368 -2.8275 7.0399 21 1 8.7578 -2.0844 4.7316 22 6 6.7821 -2.9856 3.0012 23 8 2.2873 -1.0890 -0.0056 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 4.4156 1.3163 0.0011 28 1 5.6085 -1.0440 -0.5117 29 1 4.5700 -2.4896 -0.5129 30 1 6.5463 -3.5713 -0.2022 31 1 7.9097 -2.5397 0.3255 32 1 8.7316 -4.7277 0.8947 33 1 7.1017 -5.3076 1.3761 34 1 10.0194 -3.6718 2.7297 35 1 8.2730 -5.4834 6.9770 36 1 6.0116 -3.5204 3.5565 37 1 7.0777 -2.0878 3.5441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262174821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:56 Heat of formation + Delta-G solvation = -80.607769 kcal Electronic energy + Delta-G solvation = -22015.552170 eV Core-core repulsion = 18565.867929 eV Total energy + Delta-G solvation = -3449.684241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.36523 -41.19967 -39.21265 -36.22530 -35.80761 -34.56469 -34.21590 -32.12780 -31.13898 -30.20478 -27.64784 -26.24498 -24.32024 -23.40829 -22.23105 -21.54471 -20.59764 -19.24401 -18.55157 -18.04195 -17.56643 -17.35514 -16.86029 -16.49521 -16.20441 -15.59682 -15.29160 -15.03423 -14.94096 -14.48527 -14.31051 -14.02168 -13.85758 -13.63356 -13.48622 -13.38092 -13.27582 -13.01685 -12.71350 -12.40199 -12.32587 -12.11882 -12.02339 -11.63283 -11.20910 -11.04230 -10.88329 -10.27740 -9.72736 -9.70766 -8.45745 -6.57194 0.34278 1.26256 1.33215 1.46925 1.51254 1.53944 1.66844 2.06353 2.26645 2.91647 3.12511 3.38897 3.56270 3.70839 3.80051 3.99486 4.09717 4.19257 4.32191 4.32389 4.40720 4.59862 4.61783 4.63149 4.66990 4.81701 4.96576 4.99355 5.00854 5.10874 5.25174 5.36106 5.40130 5.49388 6.02951 6.47976 6.57099 6.67069 7.00529 7.14498 7.30256 8.68341 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.004319 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.089468 B = 6481.124010 C = 6857.955691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.517 5.517 4 C -0.039 4.039 5 C -0.042 4.042 6 C -0.035 4.035 7 C 0.515 3.485 8 O -0.597 6.597 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.139 4.139 12 C 0.213 3.787 13 O -0.577 6.577 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.046 3.954 17 N -0.928 5.928 18 Si 0.913 3.087 19 H -0.298 1.298 20 H -0.295 1.295 21 H -0.215 1.215 22 C 0.114 3.886 23 O -0.212 6.212 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.200 0.800 28 H 0.169 0.831 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.384 0.616 35 H 0.268 0.732 36 H 0.046 0.954 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 8.111 -19.030 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.247 5.247 4 C -0.177 4.177 5 C -0.095 4.095 6 C -0.074 4.074 7 C 0.305 3.695 8 O -0.479 6.479 9 N -0.343 5.343 10 C -0.021 4.021 11 C -0.177 4.177 12 C 0.172 3.828 13 O -0.385 6.385 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.155 4.155 17 N -0.566 5.566 18 Si 0.740 3.260 19 H -0.226 1.226 20 H -0.223 1.223 21 H -0.138 1.138 22 C -0.009 4.009 23 O -0.100 6.100 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.216 0.784 28 H 0.187 0.813 29 H 0.163 0.837 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.422 9.405 -18.317 22.246 hybrid contribution 0.626 -0.658 1.465 1.724 sum -7.796 8.747 -16.852 20.525 Atomic orbital electron populations 1.20539 0.78131 1.06176 1.06434 1.27316 0.98131 0.78071 0.98757 1.70422 1.02736 1.31290 1.20268 1.23377 0.95585 0.93396 1.05355 1.22920 0.83602 0.95288 1.07697 1.20168 0.92314 1.02319 0.92612 1.20939 0.78760 0.77412 0.92365 1.90715 1.54667 1.53822 1.48650 1.48720 1.27921 1.49055 1.08649 1.22730 0.93971 0.94660 0.90725 1.23260 1.02610 0.97185 0.94633 1.19795 0.82000 0.87015 0.93980 1.86414 1.16471 1.40195 1.95469 1.21578 1.52001 0.93666 0.91018 0.92546 1.25572 0.92839 0.99822 0.97290 1.70009 1.50026 1.34021 1.02594 0.86485 0.77799 0.83548 0.78179 1.22600 1.22264 1.13772 1.22220 0.96169 0.97331 0.85189 1.84354 1.17079 1.38513 1.70078 0.86407 0.88123 0.87298 0.78361 0.81325 0.83713 0.86488 0.88716 0.87427 0.90983 0.76710 0.92283 0.93517 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 71.24 0.75 -0.02 16 2 C 0.18 4.66 8.34 88.34 0.74 5.40 16 3 N -0.52 -15.04 11.29 -303.82 -3.43 -18.47 16 4 C -0.04 -1.07 11.80 83.39 0.98 -0.09 16 5 C -0.04 -1.13 5.88 24.79 0.15 -0.98 16 6 C -0.04 -0.73 5.26 29.10 0.15 -0.57 16 7 C 0.52 17.42 7.84 87.66 0.69 18.10 16 8 O -0.60 -27.10 16.36 -3.02 -0.05 -27.15 16 9 N -0.61 -20.82 3.33 -811.79 -2.70 -23.52 16 10 C 0.10 2.32 6.68 86.86 0.58 2.90 16 11 C -0.14 -4.15 6.23 31.99 0.20 -3.95 16 12 C 0.21 8.85 0.69 -10.35 -0.01 8.84 16 13 O -0.58 -22.62 10.55 -148.98 -1.57 -24.20 16 14 C -0.54 -28.59 8.70 25.60 0.22 -28.36 16 15 H 0.06 3.20 8.03 -2.92 -0.02 3.17 16 16 C 0.05 2.61 5.47 84.65 0.46 3.08 16 17 N -0.93 -56.25 13.96 21.45 0.30 -55.95 16 18 Si 0.91 46.26 23.98 68.60 1.65 47.90 16 19 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 20 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 21 H -0.22 -10.34 5.36 99.48 0.53 -9.81 16 22 C 0.11 5.09 4.38 86.73 0.38 5.47 16 23 O -0.21 -6.03 10.78 -3.71 -0.04 -6.07 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.17 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.15 2.10 7.85 -2.39 -0.02 2.08 16 30 H 0.12 1.67 7.48 -2.39 -0.02 1.66 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.28 8.05 -2.38 -0.02 2.26 16 34 H 0.38 12.41 9.07 -74.05 -0.67 11.74 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.05 2.38 7.61 -2.39 -0.02 2.36 16 37 H 0.04 1.85 5.59 -2.38 -0.01 1.83 16 Total: -1.00 -82.58 310.49 -0.30 -82.88 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.25 Total: 14.76 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.29 Total: 9.82 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -5.83 Total: -97.94 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.66 Total: -57.42 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.65 Total: 47.90 kcal Total: -82.58 -0.30 -82.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262174821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.271 kcal (2) G-P(sol) polarization free energy of solvation -82.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds