Wall clock time and date at job start Tue Mar 31 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48507 * 109.46628 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46940 * 299.99776 * 3 2 1 6 6 H 1.48494 * 109.47266 * 60.00263 * 3 2 1 7 7 C 1.37877 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47013 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47180 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47354 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99945 * 180.27293 * 12 11 10 14 14 O 1.21588 * 120.00168 * 359.72235 * 13 12 11 15 15 N 1.34777 * 120.00032 * 179.72185 * 13 12 11 16 16 C 1.46499 * 120.00100 * 174.71333 * 15 13 12 17 17 C 1.52999 * 115.54803 * 294.04914 * 16 15 13 18 18 F 1.39899 * 109.47371 * 65.55033 * 17 16 15 19 19 F 1.39903 * 109.47417 * 185.55211 * 17 16 15 20 20 F 1.39903 * 109.47121 * 305.55374 * 17 16 15 21 21 C 1.52995 * 117.50209 * 148.38227 * 16 15 13 22 22 C 1.52997 * 117.50063 * 79.71702 * 16 15 13 23 23 H 0.96998 * 120.00399 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47418 * 59.99751 * 9 7 2 25 25 H 1.08997 * 109.47229 * 299.99349 * 9 7 2 26 26 H 1.08996 * 109.47435 * 60.00051 * 10 9 7 27 27 H 1.09005 * 109.47346 * 299.99612 * 10 9 7 28 28 H 1.08996 * 109.46923 * 59.99702 * 11 10 9 29 29 H 1.09005 * 109.46635 * 300.00011 * 11 10 9 30 30 H 0.96996 * 119.99688 * 359.97438 * 12 11 10 31 31 H 0.96999 * 119.99640 * 354.71480 * 15 13 12 32 32 H 1.09005 * 117.49484 * 359.97438 * 21 16 15 33 33 H 1.08993 * 117.50280 * 145.01699 * 21 16 15 34 34 H 1.08996 * 117.50063 * 214.97622 * 22 16 15 35 35 H 1.08995 * 117.49664 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1007 0.0005 13 6 1.9832 -7.3713 -0.0055 14 8 0.7878 -7.5935 -0.0063 15 7 2.8590 -8.3957 -0.0106 16 6 2.3748 -9.7739 0.0999 17 6 1.7159 -10.1371 1.4321 18 9 0.5362 -9.4007 1.5849 19 9 1.4177 -11.5039 1.4477 20 9 2.5911 -9.8387 2.4819 21 6 3.1790 -10.8643 -0.6108 22 6 1.8195 -10.4312 -1.1653 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.3860 -5.9233 0.0008 31 1 3.8099 -8.2203 -0.0873 32 1 4.0682 -10.5561 -1.1609 33 1 3.2383 -11.8405 -0.1296 34 1 0.9851 -11.1226 -1.0485 35 1 1.8148 -9.8382 -2.0798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262323270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:55 Heat of formation + Delta-G solvation = -166.167037 kcal Electronic energy + Delta-G solvation = -21968.887166 eV Core-core repulsion = 17973.636056 eV Total energy + Delta-G solvation = -3995.251109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.16163 -47.78268 -47.50898 -40.16880 -37.86461 -35.33676 -33.53646 -32.86744 -30.94165 -27.22798 -26.54008 -23.47673 -23.12242 -21.73533 -20.80629 -20.39341 -18.73686 -18.41602 -18.22538 -17.96208 -16.48202 -16.02771 -15.42095 -15.09700 -14.60041 -14.47910 -14.40392 -14.36495 -14.10218 -14.02767 -13.94275 -13.71694 -13.62859 -12.63758 -12.29944 -12.08771 -11.87402 -11.81784 -11.43811 -11.17975 -10.92660 -10.74503 -10.57606 -10.17048 -9.87953 -9.49099 -9.45932 -9.12101 -8.74397 -8.38067 -6.02367 -4.05536 2.19334 2.56757 2.83483 3.20320 3.29567 3.37087 3.40412 3.54775 3.84321 4.03130 4.09267 4.43858 4.49675 4.53535 4.84396 5.02922 5.33511 5.38278 5.53264 5.65447 5.78773 6.06403 6.16946 6.45477 6.59941 6.67404 6.92694 6.99714 7.63331 7.75677 7.96450 7.98154 8.37120 8.60690 9.01373 9.58751 11.08952 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.042077 B = 0.002917 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.291536 B = 9596.789793 C = 9719.143286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.736 5.736 13 C 0.696 3.304 14 O -0.567 6.567 15 N -0.712 5.712 16 C 0.051 3.949 17 C 0.479 3.521 18 F -0.155 7.155 19 F -0.182 7.182 20 F -0.181 7.181 21 C -0.144 4.144 22 C -0.138 4.138 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.395 0.605 31 H 0.405 0.595 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 -23.978 -1.013 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.390 5.390 13 C 0.396 3.604 14 O -0.442 6.442 15 N -0.370 5.370 16 C -0.041 4.041 17 C 0.423 3.577 18 F -0.136 7.136 19 F -0.163 7.163 20 F -0.162 7.162 21 C -0.181 4.181 22 C -0.177 4.177 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.228 0.772 31 H 0.241 0.759 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.311 -23.990 -0.957 25.098 hybrid contribution 1.252 1.182 0.299 1.747 sum 8.563 -22.809 -0.658 24.372 Atomic orbital electron populations 1.69973 1.06057 1.26595 1.50597 1.25034 0.94857 0.99319 0.95285 0.86526 0.80029 0.83766 0.77605 1.19768 1.21001 1.20998 1.21235 0.93015 0.90923 1.50864 0.92602 1.19034 0.93852 0.90790 0.97739 1.21899 0.99816 0.93251 1.00865 1.21567 0.91219 0.83930 1.02083 1.45366 1.10651 1.04106 1.78918 1.16072 0.85350 0.80762 0.78261 1.90999 1.13481 1.83633 1.56070 1.44235 1.09681 1.02045 1.81002 1.20901 1.07707 0.84309 0.91194 1.19742 0.77781 0.74261 0.85912 1.93340 1.47847 1.76367 1.96019 1.93154 1.93649 1.32727 1.96781 1.93183 1.69375 1.93012 1.60651 1.23522 0.96924 0.96814 1.00880 1.23478 0.97162 1.01328 0.95696 0.92963 0.96220 0.96194 0.92709 0.92746 0.91775 0.91764 0.77206 0.75870 0.86435 0.86334 0.86828 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.13 2.37 5.67 -4.04 -0.02 2.35 16 12 N -0.74 -10.36 5.56 -65.22 -0.36 -10.73 16 13 C 0.70 10.32 8.34 -86.92 -0.72 9.59 16 14 O -0.57 -10.75 14.11 5.29 0.07 -10.67 16 15 N -0.71 -7.43 5.43 -52.42 -0.28 -7.72 16 16 C 0.05 0.50 1.89 -131.82 -0.25 0.26 16 17 C 0.48 5.84 3.16 37.16 0.12 5.95 16 18 F -0.15 -2.46 14.84 2.25 0.03 -2.43 16 19 F -0.18 -1.93 15.90 2.25 0.04 -1.90 16 20 F -0.18 -2.27 17.30 2.25 0.04 -2.23 16 21 C -0.14 -0.83 9.88 -26.69 -0.26 -1.09 16 22 C -0.14 -1.12 9.92 -26.69 -0.26 -1.38 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 4.31 8.49 -40.82 -0.35 3.96 16 31 H 0.41 2.85 8.85 -40.82 -0.36 2.48 16 32 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.12 0.55 7.62 -51.93 -0.40 0.16 16 34 H 0.11 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -33.71 315.05 -6.54 -40.25 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.44 Total: -0.01 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.10 Total: 0.34 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.09 Total: -44.51 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.71 -6.54 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262323270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.919 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds