Wall clock time and date at job start Tue Mar 31 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48499 * 109.46908 * 269.99714 * 3 2 1 5 5 H 1.48502 * 109.47342 * 29.99286 * 3 2 1 6 6 H 1.48503 * 109.47082 * 149.99399 * 3 2 1 7 7 C 1.37877 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 173.55622 * 7 2 1 9 9 C 1.50705 * 119.99650 * 353.56577 * 7 2 1 10 10 C 1.52995 * 115.55354 * 85.40029 * 9 7 2 11 11 N 1.46494 * 109.47253 * 65.13664 * 10 9 7 12 12 C 1.34773 * 120.00201 * 178.27678 * 11 10 9 13 13 O 1.21282 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00276 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47188 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.66856 * 307.93407 * 15 14 12 17 17 C 1.54226 * 110.60548 * 184.99962 * 15 14 12 18 18 C 1.51314 * 103.55959 * 241.48331 * 17 15 14 19 19 O 1.21229 * 125.40278 * 180.02562 * 18 17 15 20 20 N 1.33878 * 109.20376 * 0.02562 * 18 17 15 21 21 C 1.33879 * 114.47787 * 359.97438 * 20 18 17 22 22 O 1.21222 * 125.39939 * 180.02562 * 21 20 18 23 23 C 1.53003 * 117.49400 * 231.07296 * 9 7 2 24 24 C 1.53006 * 117.49430 * 299.72590 * 9 7 2 25 25 H 0.97002 * 120.00639 * 5.07944 * 1 2 3 26 26 H 1.08999 * 109.47026 * 305.13662 * 10 9 7 27 27 H 1.09001 * 109.47177 * 185.14151 * 10 9 7 28 28 H 0.96997 * 120.00299 * 358.28828 * 11 10 9 29 29 H 1.08999 * 109.46808 * 60.00273 * 14 12 11 30 30 H 1.09000 * 109.46956 * 300.00464 * 14 12 11 31 31 H 1.08997 * 110.61010 * 0.02562 * 17 15 14 32 32 H 1.09001 * 110.60477 * 122.96880 * 17 15 14 33 33 H 0.97001 * 122.76076 * 179.97438 * 20 18 17 34 34 H 1.09004 * 117.49465 * 215.00093 * 23 9 7 35 35 H 1.08993 * 117.50054 * 0.02562 * 23 9 7 36 36 H 1.08992 * 117.50055 * 359.97438 * 24 9 7 37 37 H 1.09001 * 117.49216 * 144.97713 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1044 9 6 1.2582 -2.4950 0.1474 10 6 0.7023 -3.0869 -1.1493 11 7 1.8113 -3.4598 -2.0308 12 6 1.5602 -4.0371 -3.2224 13 8 0.4161 -4.2474 -3.5653 14 6 2.7012 -4.4212 -4.1290 15 6 2.1464 -5.0518 -5.4078 16 1 1.4528 -5.8582 -5.1696 17 6 3.2934 -5.5683 -6.3001 18 6 3.1461 -4.7598 -7.5706 19 8 3.8566 -4.8526 -8.5485 20 7 2.1066 -3.9257 -7.4438 21 6 1.4717 -4.0054 -6.2678 22 8 0.5088 -3.3443 -5.9435 23 6 1.7471 -3.4728 1.2178 24 6 0.4418 -2.7006 1.4250 25 1 -0.4851 0.8367 -0.0744 26 1 0.0755 -2.3469 -1.6470 27 1 0.1077 -3.9710 -0.9195 28 1 2.7264 -3.2914 -1.7567 29 1 3.3445 -5.1384 -3.6193 30 1 3.2782 -3.5322 -4.3834 31 1 4.2592 -5.3764 -5.8328 32 1 3.1704 -6.6316 -6.5057 33 1 1.8358 -3.3139 -8.1461 34 1 1.6726 -4.5379 0.9981 35 1 2.6081 -3.1751 1.8160 36 1 0.4448 -1.8952 2.1593 37 1 -0.4917 -3.2573 1.3415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262338068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:44 Heat of formation + Delta-G solvation = -85.506495 kcal Electronic energy + Delta-G solvation = -21723.696959 eV Core-core repulsion = 18273.800293 eV Total energy + Delta-G solvation = -3449.896666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.94646 -39.18194 -38.46664 -36.71161 -35.95284 -33.62425 -33.26012 -31.98706 -29.11963 -26.40063 -25.44442 -24.50754 -21.93705 -21.28787 -20.95845 -19.68581 -19.25309 -18.00986 -17.16808 -16.52283 -16.20591 -16.01149 -15.44587 -14.93908 -14.68524 -14.62758 -14.18888 -14.02494 -13.78739 -13.33750 -13.09165 -12.88652 -12.45534 -12.20453 -11.64809 -11.61891 -11.41245 -11.01775 -10.95066 -10.79064 -10.54454 -10.41470 -10.29336 -10.02781 -9.67243 -9.28577 -8.97996 -8.51348 -8.28766 -8.06897 -6.09226 -4.18290 1.38409 2.60148 2.64133 3.20108 3.24256 3.32535 3.33543 3.66279 3.90559 4.07637 4.26882 4.34067 4.51754 4.97048 5.14238 5.17367 5.19788 5.29509 5.42799 5.53119 5.68331 5.83661 6.01948 6.31837 6.45360 6.49610 6.55767 6.66745 6.88855 7.08056 7.16295 7.28463 7.42864 7.47833 7.77814 7.79544 8.28458 8.31996 8.81972 8.89328 9.48793 10.98548 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.004237 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.682081 B = 6607.627284 C = 7178.665190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.165 3.835 11 N -0.704 5.704 12 C 0.495 3.505 13 O -0.534 6.534 14 C -0.129 4.129 15 C -0.107 4.107 16 H 0.133 0.867 17 C -0.156 4.156 18 C 0.532 3.468 19 O -0.494 6.494 20 N -0.685 5.685 21 C 0.521 3.479 22 O -0.437 6.437 23 C -0.210 4.210 24 C -0.149 4.149 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.399 0.601 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -10.881 -9.318 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.042 3.958 11 N -0.353 5.353 12 C 0.279 3.721 13 O -0.411 6.411 14 C -0.170 4.170 15 C -0.129 4.129 16 H 0.151 0.849 17 C -0.196 4.196 18 C 0.320 3.680 19 O -0.367 6.367 20 N -0.352 5.352 21 C 0.307 3.693 22 O -0.303 6.303 23 C -0.248 4.248 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.232 0.768 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.262 -10.676 -9.657 15.698 hybrid contribution 0.682 1.460 -0.208 1.625 sum 6.944 -9.216 -9.865 15.181 Atomic orbital electron populations 1.69968 1.05909 1.26983 1.48023 1.24983 0.94781 0.98946 0.94276 0.86648 0.79942 0.83624 0.78143 1.20701 1.21136 1.19797 1.20322 0.92775 0.88629 1.52244 0.92228 1.19038 0.98555 0.93899 0.85777 1.20970 0.87327 0.96900 0.90648 1.45919 1.11373 1.60293 1.17733 1.20249 0.90190 0.79214 0.82420 1.90745 1.22215 1.54598 1.73536 1.21612 0.98547 1.02881 0.93914 1.21820 0.97562 0.98809 0.94690 0.84944 1.22618 1.01551 1.02321 0.93063 1.20777 0.78494 0.79418 0.89351 1.90805 1.45122 1.66457 1.34325 1.44899 1.31327 1.39407 1.19559 1.20747 0.83047 0.83977 0.81550 1.90932 1.22821 1.43214 1.73310 1.23020 0.98665 0.95618 1.07468 1.22490 0.92269 1.01087 1.02828 0.92801 0.90984 0.94529 0.76755 0.87242 0.88599 0.85826 0.85899 0.74801 0.91662 0.90393 0.89856 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 12.91 55.43 0.72 -23.53 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.50 -12.68 8.63 -34.44 -0.30 -12.97 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.43 16 10 C 0.16 3.65 5.50 -4.05 -0.02 3.63 16 11 N -0.70 -12.75 5.47 -60.30 -0.33 -13.09 16 12 C 0.50 8.30 7.52 -10.99 -0.08 8.22 16 13 O -0.53 -11.12 13.97 -15.63 -0.22 -11.34 16 14 C -0.13 -1.33 5.01 -27.88 -0.14 -1.47 16 15 C -0.11 -1.01 2.68 -90.83 -0.24 -1.26 16 16 H 0.13 1.25 7.89 -51.93 -0.41 0.84 16 17 C -0.16 -0.96 6.67 -26.94 -0.18 -1.14 16 18 C 0.53 5.00 8.55 -11.09 -0.09 4.90 16 19 O -0.49 -6.18 18.02 5.60 0.10 -6.08 16 20 N -0.69 -6.79 5.48 -11.39 -0.06 -6.85 16 21 C 0.52 6.63 7.72 -11.08 -0.09 6.54 16 22 O -0.44 -7.89 15.90 -15.57 -0.25 -8.14 16 23 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 24 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 27 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.40 6.43 8.37 -40.82 -0.34 6.09 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.12 0.52 7.74 -51.93 -0.40 0.12 16 32 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 3.61 8.96 -40.82 -0.37 3.24 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -33.91 323.35 -7.03 -40.94 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.87 Total: 7.14 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.97 Total: 0.67 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.32 Total: -43.47 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.37 Total: -25.55 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.91 -7.03 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262338068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.569 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds