Wall clock time and date at job start Tue Mar 31 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99837 * 2 1 4 4 H 1.48499 * 109.46908 * 269.99714 * 3 2 1 5 5 H 1.48502 * 109.47342 * 29.99286 * 3 2 1 6 6 H 1.48503 * 109.47082 * 149.99399 * 3 2 1 7 7 C 1.37877 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 173.55622 * 7 2 1 9 9 C 1.50705 * 119.99650 * 353.56577 * 7 2 1 10 10 C 1.52995 * 115.55354 * 85.40029 * 9 7 2 11 11 N 1.46494 * 109.47253 * 65.13664 * 10 9 7 12 12 C 1.34773 * 120.00201 * 178.27678 * 11 10 9 13 13 O 1.21282 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00276 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47188 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.66856 * 307.93407 * 15 14 12 17 17 C 1.54226 * 110.60548 * 184.99962 * 15 14 12 18 18 C 1.51314 * 103.55959 * 241.48331 * 17 15 14 19 19 O 1.21229 * 125.40278 * 180.02562 * 18 17 15 20 20 N 1.33878 * 109.20376 * 0.02562 * 18 17 15 21 21 C 1.33879 * 114.47787 * 359.97438 * 20 18 17 22 22 O 1.21222 * 125.39939 * 180.02562 * 21 20 18 23 23 C 1.53003 * 117.49400 * 231.07296 * 9 7 2 24 24 C 1.53006 * 117.49430 * 299.72590 * 9 7 2 25 25 H 0.97002 * 120.00639 * 5.07944 * 1 2 3 26 26 H 1.08999 * 109.47026 * 305.13662 * 10 9 7 27 27 H 1.09001 * 109.47177 * 185.14151 * 10 9 7 28 28 H 0.96997 * 120.00299 * 358.28828 * 11 10 9 29 29 H 1.08999 * 109.46808 * 60.00273 * 14 12 11 30 30 H 1.09000 * 109.46956 * 300.00464 * 14 12 11 31 31 H 1.08997 * 110.61010 * 0.02562 * 17 15 14 32 32 H 1.09001 * 110.60477 * 122.96880 * 17 15 14 33 33 H 0.97001 * 122.76076 * 179.97438 * 20 18 17 34 34 H 1.09004 * 117.49465 * 215.00093 * 23 9 7 35 35 H 1.08993 * 117.50054 * 0.02562 * 23 9 7 36 36 H 1.08992 * 117.50055 * 359.97438 * 24 9 7 37 37 H 1.09001 * 117.49216 * 144.97713 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1044 9 6 1.2582 -2.4950 0.1474 10 6 0.7023 -3.0869 -1.1493 11 7 1.8113 -3.4598 -2.0308 12 6 1.5602 -4.0371 -3.2224 13 8 0.4161 -4.2474 -3.5653 14 6 2.7012 -4.4212 -4.1290 15 6 2.1464 -5.0518 -5.4078 16 1 1.4528 -5.8582 -5.1696 17 6 3.2934 -5.5683 -6.3001 18 6 3.1461 -4.7598 -7.5706 19 8 3.8566 -4.8526 -8.5485 20 7 2.1066 -3.9257 -7.4438 21 6 1.4717 -4.0054 -6.2678 22 8 0.5088 -3.3443 -5.9435 23 6 1.7471 -3.4728 1.2178 24 6 0.4418 -2.7006 1.4250 25 1 -0.4851 0.8367 -0.0744 26 1 0.0755 -2.3469 -1.6470 27 1 0.1077 -3.9710 -0.9195 28 1 2.7264 -3.2914 -1.7567 29 1 3.3445 -5.1384 -3.6193 30 1 3.2782 -3.5322 -4.3834 31 1 4.2592 -5.3764 -5.8328 32 1 3.1704 -6.6316 -6.5057 33 1 1.8358 -3.3139 -8.1461 34 1 1.6726 -4.5379 0.9981 35 1 2.6081 -3.1751 1.8160 36 1 0.4448 -1.8952 2.1593 37 1 -0.4917 -3.2573 1.3415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262338068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:43 Heat of formation + Delta-G solvation = -111.075465 kcal Electronic energy + Delta-G solvation = -21724.805713 eV Core-core repulsion = 18273.800293 eV Total energy + Delta-G solvation = -3451.005419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.80495 -40.47244 -39.55253 -38.40814 -36.93497 -34.81433 -34.46880 -33.94904 -30.04230 -27.95754 -27.09097 -25.69480 -22.96271 -22.66370 -21.99667 -21.26867 -20.70007 -18.92693 -18.43419 -17.78369 -17.44890 -17.16275 -16.67958 -16.45931 -16.32329 -15.68431 -15.57513 -15.18508 -14.86582 -14.71196 -14.36037 -13.85362 -13.79523 -13.51315 -13.28679 -12.93806 -12.87577 -12.79523 -12.33701 -12.14857 -12.01363 -11.66035 -11.46735 -11.37444 -10.99942 -10.83060 -10.72464 -10.43749 -9.99238 -9.70454 -8.09129 -6.22084 0.52039 1.41343 1.44240 1.52393 1.76579 1.83783 1.92507 2.41249 2.48334 3.19635 3.21278 3.26948 3.45275 3.59080 3.77652 4.12253 4.29765 4.44831 4.58349 4.62579 4.69007 4.70963 4.78750 4.87433 4.97060 5.03122 5.08126 5.11520 5.30568 5.63132 5.65418 5.67863 5.76321 5.82210 6.34512 6.38227 6.85078 6.89981 6.93343 7.47647 7.57763 8.98412 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.004237 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.682081 B = 6607.627284 C = 7178.665190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.005 3.995 10 C 0.182 3.818 11 N -0.703 5.703 12 C 0.486 3.514 13 O -0.579 6.579 14 C -0.118 4.118 15 C -0.102 4.102 16 H 0.136 0.864 17 C -0.133 4.133 18 C 0.534 3.466 19 O -0.524 6.524 20 N -0.682 5.682 21 C 0.518 3.482 22 O -0.504 6.504 23 C -0.170 4.170 24 C -0.166 4.166 25 H 0.257 0.743 26 H 0.018 0.982 27 H 0.034 0.966 28 H 0.411 0.589 29 H 0.162 0.838 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.414 0.586 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 -12.835 -9.405 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.004 3.996 10 C 0.057 3.943 11 N -0.354 5.354 12 C 0.273 3.727 13 O -0.459 6.459 14 C -0.157 4.157 15 C -0.124 4.124 16 H 0.153 0.847 17 C -0.171 4.171 18 C 0.324 3.676 19 O -0.399 6.399 20 N -0.347 5.347 21 C 0.307 3.693 22 O -0.375 6.375 23 C -0.207 4.207 24 C -0.204 4.204 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.247 0.753 29 H 0.180 0.820 30 H 0.129 0.871 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.686 -12.656 -9.757 18.687 hybrid contribution -0.380 2.037 -0.236 2.086 sum 9.306 -10.619 -9.993 17.298 Atomic orbital electron populations 1.70114 1.07427 1.27202 1.50108 1.25727 0.95378 1.02182 0.94548 0.85713 0.79130 0.79894 0.77846 1.20856 1.21825 1.18304 1.20700 0.93250 0.89524 1.50463 0.91426 1.19063 0.99592 0.94536 0.86362 1.20435 0.88093 0.95137 0.90630 1.45825 1.10745 1.60721 1.18085 1.21446 0.91475 0.77604 0.82125 1.90736 1.24894 1.56078 1.74217 1.21714 0.96248 1.04962 0.92811 1.21883 0.98644 0.97563 0.94327 0.84653 1.22706 1.01434 1.03182 0.89822 1.21353 0.77308 0.78901 0.90024 1.90807 1.45980 1.67269 1.35842 1.44952 1.31305 1.39449 1.18998 1.21416 0.82054 0.83589 0.82283 1.90909 1.25823 1.45990 1.74738 1.23003 0.97021 0.96344 1.04316 1.22431 0.93942 1.01566 1.02463 0.93415 0.96393 0.94785 0.75343 0.82012 0.87060 0.82361 0.82577 0.74749 0.88928 0.89447 0.92078 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 12.91 21.45 0.28 -52.08 16 2 C 0.02 1.17 5.39 84.65 0.46 1.62 16 3 Si 0.95 42.16 29.55 68.60 2.03 44.19 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.50 -25.10 8.63 25.60 0.22 -24.88 16 8 H 0.07 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.01 0.24 1.38 -52.92 -0.07 0.16 16 10 C 0.18 8.22 5.50 86.38 0.48 8.69 16 11 N -0.70 -24.71 5.47 -463.08 -2.54 -27.24 16 12 C 0.49 15.70 7.52 87.66 0.66 16.36 16 13 O -0.58 -24.53 13.97 17.22 0.24 -24.29 16 14 C -0.12 -1.96 5.01 29.85 0.15 -1.81 16 15 C -0.10 -1.61 2.68 -10.93 -0.03 -1.64 16 16 H 0.14 2.16 7.89 -2.39 -0.02 2.14 16 17 C -0.13 -0.96 6.67 30.46 0.20 -0.76 16 18 C 0.53 8.54 8.55 87.99 0.75 9.29 16 19 O -0.52 -11.90 18.02 -2.87 -0.05 -11.95 16 20 N -0.68 -12.80 5.48 -427.79 -2.34 -15.14 16 21 C 0.52 12.85 7.72 87.99 0.68 13.53 16 22 O -0.50 -18.97 15.90 17.40 0.28 -18.69 16 23 C -0.17 -6.41 9.96 30.62 0.30 -6.11 16 24 C -0.17 -7.47 9.42 30.62 0.29 -7.19 16 25 H 0.26 14.36 8.32 -92.71 -0.77 13.58 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 28 H 0.41 12.23 8.37 -92.71 -0.78 11.46 16 29 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.62 8.12 -2.39 -0.02 1.60 16 31 H 0.16 0.22 7.74 -2.39 -0.02 0.20 16 32 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.41 7.25 8.96 -92.71 -0.83 6.41 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -79.40 323.35 1.49 -77.91 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.49 Total: 20.01 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 4.09 Total: 7.28 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -4.60 Total: -94.46 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: 0.47 Total: -54.94 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -79.40 1.49 -77.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262338068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.162 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds