Wall clock time and date at job start Tue Mar 31 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48498 * 109.47053 * 239.99432 * 3 2 1 5 5 H 1.48503 * 109.47031 * 119.99922 * 3 2 1 6 6 H 1.48497 * 109.47560 * 359.97438 * 3 2 1 7 7 C 1.37875 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99831 * 177.49148 * 7 2 1 9 9 C 1.50706 * 119.99870 * 357.48978 * 7 2 1 10 10 C 1.52998 * 115.54937 * 279.54583 * 9 7 2 11 11 N 1.46497 * 109.47224 * 298.17738 * 10 9 7 12 12 C 1.34773 * 120.00050 * 184.49784 * 11 10 9 13 13 O 1.21283 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00295 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47570 * 179.97438 * 14 12 11 16 16 H 1.09006 * 110.53909 * 56.39531 * 15 14 12 17 17 C 1.54224 * 110.61089 * 179.40858 * 15 14 12 18 18 C 1.51309 * 103.55570 * 118.51716 * 17 15 14 19 19 O 1.21228 * 125.39902 * 180.02562 * 18 17 15 20 20 N 1.33876 * 109.20531 * 0.02562 * 18 17 15 21 21 C 1.33876 * 114.47841 * 359.97438 * 20 18 17 22 22 O 1.21225 * 125.39949 * 180.02562 * 21 20 18 23 23 C 1.53006 * 117.49393 * 133.84145 * 9 7 2 24 24 C 1.52999 * 117.49831 * 65.22290 * 9 7 2 25 25 H 0.97006 * 119.99947 * 185.88154 * 1 2 3 26 26 H 1.08995 * 109.47049 * 58.18228 * 10 9 7 27 27 H 1.09004 * 109.46423 * 178.18143 * 10 9 7 28 28 H 0.96999 * 120.00207 * 4.50552 * 11 10 9 29 29 H 1.08999 * 109.47396 * 300.00490 * 14 12 11 30 30 H 1.09002 * 109.47228 * 59.99993 * 14 12 11 31 31 H 1.08996 * 110.60867 * 237.04217 * 17 15 14 32 32 H 1.09008 * 110.60270 * 0.02562 * 17 15 14 33 33 H 0.97006 * 122.76467 * 179.97438 * 20 18 17 34 34 H 1.08997 * 117.49699 * 359.97438 * 23 9 7 35 35 H 1.08997 * 117.49791 * 145.02295 * 23 9 7 36 36 H 1.08999 * 117.49770 * 214.97770 * 24 9 7 37 37 H 1.09001 * 117.49899 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0838 -1.1945 -0.0404 9 6 1.2521 -2.4985 0.0583 10 6 0.7761 -2.9247 1.4485 11 7 1.9350 -3.1181 2.3235 12 6 1.7632 -3.5843 3.5762 13 8 0.6492 -3.8443 3.9791 14 6 2.9553 -3.7827 4.4766 15 6 2.4875 -4.3159 5.8322 16 1 1.9181 -5.2367 5.7053 17 6 3.6902 -4.5427 6.7707 18 6 3.4185 -3.6065 7.9279 19 8 4.1281 -3.4685 8.9011 20 7 2.2703 -2.9545 7.7068 21 6 1.6625 -3.2756 6.5580 22 8 0.6169 -2.8071 6.1619 23 6 1.6760 -3.6021 -0.9130 24 6 0.3603 -2.8530 -1.1333 25 1 -0.4850 -0.8357 0.0861 26 1 0.1315 -2.1507 1.8649 27 1 0.2193 -3.8587 1.3712 28 1 2.8260 -2.9104 2.0012 29 1 3.6398 -4.4982 4.0209 30 1 3.4664 -2.8304 4.6179 31 1 3.7200 -5.5771 7.1129 32 1 4.6218 -4.2752 6.2719 33 1 1.9085 -2.3030 8.3278 34 1 2.4988 -3.3845 -1.5939 35 1 1.6158 -4.6322 -0.5617 36 1 -0.5654 -3.3901 -0.9269 37 1 0.3175 -2.1425 -1.9589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262338069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:49 Heat of formation + Delta-G solvation = -89.857176 kcal Electronic energy + Delta-G solvation = -21833.475265 eV Core-core repulsion = 18383.389939 eV Total energy + Delta-G solvation = -3450.085325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96294 -39.26206 -38.48597 -36.99433 -35.96754 -33.65895 -33.36707 -31.95389 -29.17260 -26.40185 -25.08955 -24.53163 -21.95382 -21.44364 -21.02756 -19.80409 -19.46619 -18.02492 -17.27512 -16.74176 -16.29691 -16.20664 -15.46669 -15.17702 -14.70204 -14.27308 -14.13440 -13.86187 -13.79512 -13.39184 -13.12640 -12.95177 -12.61455 -12.30391 -12.18099 -11.65639 -11.45984 -11.00520 -10.83405 -10.81604 -10.51445 -10.41392 -10.17415 -10.03409 -9.71239 -9.32530 -8.72897 -8.65253 -8.31867 -8.21010 -6.40605 -4.19211 1.37798 2.59059 2.63477 3.13108 3.37947 3.38338 3.57841 3.58499 3.88712 4.06105 4.22702 4.44441 4.47950 4.92088 5.03250 5.10617 5.19438 5.26915 5.39399 5.45882 5.63717 5.80897 5.83181 6.11084 6.22515 6.36380 6.48979 6.49911 6.65993 6.83846 7.12567 7.15636 7.16407 7.25357 7.77669 8.13359 8.19116 8.30406 8.78565 8.80912 9.57700 10.97624 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.004399 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.320730 B = 6363.880226 C = 6973.354697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.005 3.995 10 C 0.161 3.839 11 N -0.702 5.702 12 C 0.493 3.507 13 O -0.530 6.530 14 C -0.129 4.129 15 C -0.107 4.107 16 H 0.131 0.869 17 C -0.156 4.156 18 C 0.532 3.468 19 O -0.494 6.494 20 N -0.685 5.685 21 C 0.520 3.480 22 O -0.433 6.433 23 C -0.193 4.193 24 C -0.174 4.174 25 H 0.276 0.724 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.401 0.599 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.413 0.587 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 -9.511 10.468 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.004 3.996 10 C 0.037 3.963 11 N -0.352 5.352 12 C 0.277 3.723 13 O -0.407 6.407 14 C -0.169 4.169 15 C -0.129 4.129 16 H 0.149 0.851 17 C -0.195 4.195 18 C 0.319 3.681 19 O -0.367 6.367 20 N -0.352 5.352 21 C 0.305 3.695 22 O -0.298 6.298 23 C -0.230 4.230 24 C -0.212 4.212 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.236 0.764 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.414 -7.824 10.819 15.272 hybrid contribution 0.439 -1.191 0.148 1.278 sum 7.853 -9.015 10.967 16.224 Atomic orbital electron populations 1.70722 1.06831 1.31804 1.43929 1.25758 0.96535 1.02278 0.93161 0.83594 0.74974 0.75636 0.76434 1.21475 1.21480 1.20759 1.21184 0.93459 0.89516 1.57259 0.92909 1.19335 0.99246 0.94734 0.86250 1.20962 0.86670 0.98319 0.90346 1.45828 1.11743 1.64904 1.12714 1.20305 0.90388 0.78877 0.82701 1.90770 1.25316 1.50738 1.73829 1.21607 0.98437 1.03936 0.92946 1.21804 0.95779 1.00534 0.94737 0.85110 1.22607 1.00675 1.01826 0.94421 1.20761 0.79445 0.80382 0.87463 1.90805 1.49684 1.64943 1.31251 1.44903 1.24609 1.41826 1.23866 1.20724 0.85374 0.82943 0.80459 1.90945 1.19733 1.52248 1.66900 1.22849 0.98741 0.95522 1.05888 1.22763 0.92472 1.02953 1.03016 0.91215 0.91981 0.94108 0.76443 0.87208 0.88514 0.85896 0.85825 0.74781 0.90131 0.91414 0.91371 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.54 55.43 0.75 -25.17 16 2 C 0.03 0.79 5.44 -17.82 -0.10 0.70 16 3 Si 1.07 24.00 29.90 -169.99 -5.08 18.92 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.58 -14.67 8.42 -34.44 -0.29 -14.96 16 8 H 0.05 1.32 7.81 -52.48 -0.41 0.91 16 9 C 0.01 0.12 0.99 -155.66 -0.15 -0.04 16 10 C 0.16 3.53 5.43 -4.04 -0.02 3.51 16 11 N -0.70 -12.83 5.45 -60.30 -0.33 -13.16 16 12 C 0.49 8.28 7.50 -10.99 -0.08 8.19 16 13 O -0.53 -10.97 13.57 -17.45 -0.24 -11.21 16 14 C -0.13 -1.33 5.04 -27.88 -0.14 -1.47 16 15 C -0.11 -1.00 2.72 -90.83 -0.25 -1.25 16 16 H 0.13 1.19 8.03 -51.93 -0.42 0.78 16 17 C -0.16 -0.96 6.67 -26.94 -0.18 -1.14 16 18 C 0.53 5.04 8.55 -11.09 -0.09 4.95 16 19 O -0.49 -6.21 18.02 5.60 0.10 -6.11 16 20 N -0.69 -6.87 5.48 -11.40 -0.06 -6.93 16 21 C 0.52 6.65 7.71 -11.09 -0.09 6.56 16 22 O -0.43 -7.86 15.42 -17.40 -0.27 -8.13 16 23 C -0.19 -3.87 9.95 -26.73 -0.27 -4.14 16 24 C -0.17 -3.84 8.74 -26.73 -0.23 -4.07 16 25 H 0.28 7.95 6.17 -40.82 -0.25 7.69 16 26 H 0.06 1.59 7.81 -51.93 -0.41 1.18 16 27 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.40 6.67 8.22 -40.82 -0.34 6.34 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 0.53 7.74 -51.92 -0.40 0.13 16 33 H 0.41 3.67 8.96 -40.82 -0.37 3.30 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -34.64 319.70 -6.97 -41.60 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.76 Total: 8.55 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.89 Total: -3.17 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.36 Total: -45.26 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.40 Total: -25.45 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.64 -6.97 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262338069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.253 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds