Wall clock time and date at job start Tue Mar 31 2020 01:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99813 * 2 1 4 4 H 1.48498 * 109.47053 * 239.99432 * 3 2 1 5 5 H 1.48503 * 109.47031 * 119.99922 * 3 2 1 6 6 H 1.48497 * 109.47560 * 359.97438 * 3 2 1 7 7 C 1.37875 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99831 * 177.49148 * 7 2 1 9 9 C 1.50706 * 119.99870 * 357.48978 * 7 2 1 10 10 C 1.52998 * 115.54937 * 279.54583 * 9 7 2 11 11 N 1.46497 * 109.47224 * 298.17738 * 10 9 7 12 12 C 1.34773 * 120.00050 * 184.49784 * 11 10 9 13 13 O 1.21283 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00295 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47570 * 179.97438 * 14 12 11 16 16 H 1.09006 * 110.53909 * 56.39531 * 15 14 12 17 17 C 1.54224 * 110.61089 * 179.40858 * 15 14 12 18 18 C 1.51309 * 103.55570 * 118.51716 * 17 15 14 19 19 O 1.21228 * 125.39902 * 180.02562 * 18 17 15 20 20 N 1.33876 * 109.20531 * 0.02562 * 18 17 15 21 21 C 1.33876 * 114.47841 * 359.97438 * 20 18 17 22 22 O 1.21225 * 125.39949 * 180.02562 * 21 20 18 23 23 C 1.53006 * 117.49393 * 133.84145 * 9 7 2 24 24 C 1.52999 * 117.49831 * 65.22290 * 9 7 2 25 25 H 0.97006 * 119.99947 * 185.88154 * 1 2 3 26 26 H 1.08995 * 109.47049 * 58.18228 * 10 9 7 27 27 H 1.09004 * 109.46423 * 178.18143 * 10 9 7 28 28 H 0.96999 * 120.00207 * 4.50552 * 11 10 9 29 29 H 1.08999 * 109.47396 * 300.00490 * 14 12 11 30 30 H 1.09002 * 109.47228 * 59.99993 * 14 12 11 31 31 H 1.08996 * 110.60867 * 237.04217 * 17 15 14 32 32 H 1.09008 * 110.60270 * 0.02562 * 17 15 14 33 33 H 0.97006 * 122.76467 * 179.97438 * 20 18 17 34 34 H 1.08997 * 117.49699 * 359.97438 * 23 9 7 35 35 H 1.08997 * 117.49791 * 145.02295 * 23 9 7 36 36 H 1.08999 * 117.49770 * 214.97770 * 24 9 7 37 37 H 1.09001 * 117.49899 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0838 -1.1945 -0.0404 9 6 1.2521 -2.4985 0.0583 10 6 0.7761 -2.9247 1.4485 11 7 1.9350 -3.1181 2.3235 12 6 1.7632 -3.5843 3.5762 13 8 0.6492 -3.8443 3.9791 14 6 2.9553 -3.7827 4.4766 15 6 2.4875 -4.3159 5.8322 16 1 1.9181 -5.2367 5.7053 17 6 3.6902 -4.5427 6.7707 18 6 3.4185 -3.6065 7.9279 19 8 4.1281 -3.4685 8.9011 20 7 2.2703 -2.9545 7.7068 21 6 1.6625 -3.2756 6.5580 22 8 0.6169 -2.8071 6.1619 23 6 1.6760 -3.6021 -0.9130 24 6 0.3603 -2.8530 -1.1333 25 1 -0.4850 -0.8357 0.0861 26 1 0.1315 -2.1507 1.8649 27 1 0.2193 -3.8587 1.3712 28 1 2.8260 -2.9104 2.0012 29 1 3.6398 -4.4982 4.0209 30 1 3.4664 -2.8304 4.6179 31 1 3.7200 -5.5771 7.1129 32 1 4.6218 -4.2752 6.2719 33 1 1.9085 -2.3030 8.3278 34 1 2.4988 -3.3845 -1.5939 35 1 1.6158 -4.6322 -0.5617 36 1 -0.5654 -3.3901 -0.9269 37 1 0.3175 -2.1425 -1.9589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262338069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:48 Heat of formation + Delta-G solvation = -115.946488 kcal Electronic energy + Delta-G solvation = -21834.606582 eV Core-core repulsion = 18383.389939 eV Total energy + Delta-G solvation = -3451.216643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.82493 -40.56828 -39.57469 -38.68581 -36.94848 -34.91960 -34.49680 -33.93899 -30.10019 -27.80939 -26.87508 -25.75334 -23.11946 -22.68436 -22.06271 -21.53518 -20.79177 -18.97373 -18.74782 -17.93420 -17.55697 -17.21100 -16.64420 -16.54057 -15.77163 -15.72190 -15.58944 -15.19902 -14.93404 -14.67918 -14.52943 -14.30996 -13.86469 -13.73587 -13.38060 -12.91475 -12.81106 -12.58869 -12.21370 -12.17893 -11.97516 -11.69913 -11.44439 -11.37929 -11.01817 -10.75276 -10.65822 -10.44461 -10.18189 -9.81853 -8.50080 -6.28172 0.51192 1.55373 1.61797 1.75339 1.79534 1.81690 1.86417 2.36439 2.60135 3.18010 3.23521 3.26261 3.31203 3.50202 3.74122 4.04857 4.11107 4.37033 4.38959 4.47627 4.56201 4.60501 4.68445 4.84732 4.84958 4.89678 4.95268 5.06151 5.08090 5.36402 5.46690 5.66076 5.68279 6.15096 6.27552 6.33880 6.69494 6.83430 6.89777 7.49024 7.56558 8.88280 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.004399 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.320730 B = 6363.880226 C = 6973.354697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.023 4.023 3 Si 1.107 2.893 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.296 1.296 7 C -0.571 4.571 8 H 0.059 0.941 9 C -0.018 4.018 10 C 0.177 3.823 11 N -0.703 5.703 12 C 0.484 3.516 13 O -0.573 6.573 14 C -0.118 4.118 15 C -0.101 4.101 16 H 0.137 0.863 17 C -0.133 4.133 18 C 0.533 3.467 19 O -0.524 6.524 20 N -0.683 5.683 21 C 0.516 3.484 22 O -0.500 6.500 23 C -0.157 4.157 24 C -0.186 4.186 25 H 0.264 0.736 26 H 0.012 0.988 27 H 0.040 0.960 28 H 0.411 0.589 29 H 0.161 0.839 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.413 0.587 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.120 -11.270 10.789 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.223 4.223 3 Si 0.930 3.070 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.223 1.223 7 C -0.609 4.609 8 H 0.077 0.923 9 C -0.019 4.019 10 C 0.052 3.948 11 N -0.354 5.354 12 C 0.271 3.729 13 O -0.453 6.453 14 C -0.157 4.157 15 C -0.123 4.123 16 H 0.155 0.845 17 C -0.171 4.171 18 C 0.324 3.676 19 O -0.399 6.399 20 N -0.348 5.348 21 C 0.304 3.696 22 O -0.370 6.370 23 C -0.194 4.194 24 C -0.224 4.224 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.247 0.753 29 H 0.179 0.821 30 H 0.130 0.870 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.252 0.748 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.998 -9.617 11.155 18.382 hybrid contribution -0.669 -0.680 0.097 0.959 sum 10.329 -10.297 11.253 18.421 Atomic orbital electron populations 1.70830 1.08096 1.31127 1.47219 1.27010 0.96515 1.05883 0.92854 0.83059 0.74154 0.71926 0.77851 1.19424 1.19581 1.22269 1.21509 0.93868 0.90451 1.55067 0.92314 1.19340 1.00304 0.95304 0.86915 1.20479 0.87530 0.96451 0.90342 1.45781 1.10896 1.65512 1.13207 1.21508 0.91911 0.77069 0.82374 1.90763 1.27886 1.52209 1.74395 1.21718 0.95922 1.06344 0.91765 1.21875 0.96627 0.99243 0.94565 0.84506 1.22698 1.00098 1.02655 0.91682 1.21353 0.78347 0.80111 0.87822 1.90807 1.50371 1.65932 1.32802 1.44969 1.24841 1.41704 1.23266 1.21420 0.84640 0.82729 0.80789 1.90922 1.22715 1.54817 1.68565 1.22860 0.97098 0.95897 1.03502 1.22694 0.94120 1.03494 1.02125 0.92601 0.97000 0.94137 0.75290 0.82121 0.86964 0.82478 0.82468 0.74782 0.89444 0.88684 0.90583 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 13.54 21.45 0.29 -55.61 16 2 C -0.02 -1.23 5.44 84.65 0.46 -0.77 16 3 Si 1.11 48.21 29.90 68.60 2.05 50.26 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.57 -28.82 8.42 25.60 0.22 -28.61 16 8 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 9 C -0.02 -0.81 0.99 -52.93 -0.05 -0.86 16 10 C 0.18 7.92 5.43 86.38 0.47 8.38 16 11 N -0.70 -24.92 5.45 -463.08 -2.53 -27.45 16 12 C 0.48 15.62 7.50 87.66 0.66 16.28 16 13 O -0.57 -24.07 13.57 18.96 0.26 -23.81 16 14 C -0.12 -1.96 5.04 29.85 0.15 -1.81 16 15 C -0.10 -1.57 2.72 -10.93 -0.03 -1.60 16 16 H 0.14 2.05 8.03 -2.38 -0.02 2.04 16 17 C -0.13 -0.96 6.67 30.46 0.20 -0.75 16 18 C 0.53 8.62 8.55 87.99 0.75 9.38 16 19 O -0.52 -12.01 18.02 -2.87 -0.05 -12.06 16 20 N -0.68 -12.98 5.48 -427.80 -2.34 -15.32 16 21 C 0.52 12.85 7.71 87.99 0.68 13.53 16 22 O -0.50 -18.89 15.42 19.14 0.30 -18.60 16 23 C -0.16 -5.94 9.95 30.60 0.30 -5.64 16 24 C -0.19 -8.25 8.74 30.59 0.27 -7.98 16 25 H 0.26 15.93 6.17 -92.70 -0.57 15.36 16 26 H 0.01 0.63 7.81 -2.39 -0.02 0.61 16 27 H 0.04 1.77 8.11 -2.38 -0.02 1.75 16 28 H 0.41 12.71 8.22 -92.71 -0.76 11.95 16 29 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.16 0.25 7.74 -2.38 -0.02 0.23 16 33 H 0.41 7.39 8.96 -92.70 -0.83 6.56 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -81.09 319.70 1.77 -79.32 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.28 Total: 23.72 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 4.08 Total: -0.46 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -4.58 Total: -98.38 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: 0.50 Total: -54.47 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Total: -81.09 1.77 -79.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262338069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.628 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds