Wall clock time and date at job start Tue Mar 31 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.54038 * 113.81729 * 273.50345 * 8 7 6 10 10 O 1.44443 * 85.42764 * 223.23783 * 9 8 7 11 11 C 1.44182 * 93.37905 * 24.08884 * 10 9 8 12 12 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 13 13 N 1.30427 * 108.01038 * 359.72043 * 12 3 2 14 14 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.74900 * 359.97341 * 14 2 1 16 16 C 1.50702 * 109.46957 * 90.00099 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 25 25 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 26 26 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 27 27 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 28 28 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 29 29 H 1.09003 * 113.00398 * 45.33511 * 8 7 6 30 30 H 1.08999 * 113.86339 * 337.35025 * 9 8 7 31 31 H 1.09004 * 113.86373 * 109.04913 * 9 8 7 32 32 H 1.08994 * 113.86597 * 221.76476 * 11 10 9 33 33 H 1.09004 * 113.98194 * 90.07560 * 11 10 9 34 34 H 1.08000 * 125.99491 * 179.97438 * 12 3 2 35 35 H 1.09004 * 109.47166 * 330.00365 * 15 14 2 36 36 H 1.08994 * 109.47507 * 210.00071 * 15 14 2 37 37 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 4.0095 6.1802 1.4091 10 8 4.0608 7.5463 0.9426 11 6 3.0527 7.3298 -0.0652 12 6 3.6599 0.6496 -0.0006 13 7 3.6340 -0.6544 0.0051 14 7 2.3015 -1.0818 -0.0005 15 6 1.8499 -2.4754 -0.0006 16 6 1.6945 -2.9530 -1.4214 17 1 1.9110 -2.2853 -2.2423 18 6 1.2819 -4.2443 -1.6735 19 7 1.0187 -5.0574 -0.6739 20 14 1.0967 -4.8386 -3.4346 21 1 1.4518 -3.7395 -4.3679 22 1 2.0006 -5.9942 -3.6647 23 1 -0.3090 -5.2549 -3.6715 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6897 5.0353 -0.8860 28 1 1.6910 5.0334 0.8939 29 1 4.2522 5.5806 -0.7119 30 1 3.2855 6.0134 2.2067 31 1 4.9875 5.7483 1.6216 32 1 3.2735 7.8078 -1.0196 33 1 2.0352 7.5147 0.2791 34 1 4.5461 1.2669 -0.0012 35 1 0.8913 -2.5467 0.5136 36 1 2.5846 -3.0955 0.5129 37 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263662211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:37 Heat of formation + Delta-G solvation = -53.048681 kcal Electronic energy + Delta-G solvation = -21182.961773 eV Core-core repulsion = 17734.472584 eV Total energy + Delta-G solvation = -3448.489189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.42507 -41.46087 -40.63096 -37.35580 -35.84052 -33.91329 -32.94407 -32.36108 -29.45464 -28.38928 -27.46283 -26.52044 -25.33434 -23.67744 -21.78697 -21.23272 -20.42965 -18.92682 -18.66755 -17.91652 -17.59813 -17.04422 -16.98445 -16.55802 -16.38714 -15.98791 -15.95791 -15.06861 -14.57561 -14.39457 -14.19061 -13.98893 -13.67875 -13.62710 -13.58819 -13.14766 -12.99163 -12.84654 -12.72832 -12.34405 -12.18320 -12.03649 -11.84857 -11.74139 -11.37019 -11.23431 -10.77114 -10.66318 -10.32589 -9.66384 -8.39236 -6.55462 0.43268 1.19094 1.36639 1.38542 1.42442 1.52398 1.89633 2.24474 2.32369 2.72321 2.93555 3.23519 3.65402 3.67746 3.84433 4.00216 4.10613 4.14653 4.25571 4.40435 4.42996 4.48578 4.58916 4.63288 4.69980 4.77928 4.88056 4.97434 5.04078 5.10509 5.14961 5.16658 5.43357 5.48319 5.61398 5.72935 5.96780 6.53388 6.72873 6.90249 7.16048 8.69047 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.003136 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.411256 B = 8926.829176 C = 9006.774962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.160 3.840 3 C -0.323 4.323 4 C 0.558 3.442 5 O -0.543 6.543 6 O -0.350 6.350 7 C 0.067 3.933 8 C -0.150 4.150 9 C 0.037 3.963 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.098 3.902 13 N -0.336 5.336 14 N -0.334 5.334 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.053 0.947 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.268 1.268 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 19.765 1.586 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 C -0.336 4.336 4 C 0.406 3.594 5 O -0.435 6.435 6 O -0.266 6.266 7 C -0.006 4.006 8 C -0.168 4.168 9 C -0.039 4.039 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.090 4.090 13 N -0.155 5.155 14 N -0.110 5.110 15 C 0.147 3.853 16 C -0.595 4.595 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.193 1.193 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.241 0.759 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.126 18.664 1.733 18.864 hybrid contribution -0.654 -0.177 -0.731 0.997 sum 1.471 18.487 1.002 18.572 Atomic orbital electron populations 1.20690 0.85140 1.04781 1.04631 1.21979 0.96129 0.86334 0.93194 1.19076 0.93823 0.90127 1.30599 1.19730 0.83357 0.84864 0.71460 1.90752 1.18609 1.84795 1.49390 1.86526 1.39171 1.16454 1.84476 1.23318 0.97070 0.76820 1.03429 1.24470 0.98171 0.94397 0.99795 1.24259 1.03173 0.80709 0.95745 1.89724 1.58217 1.31196 1.53634 1.24124 0.93547 0.91461 0.93624 1.24558 0.97833 0.91225 0.95341 1.77170 0.98238 1.14249 1.25882 1.49187 1.03395 1.07908 1.50540 1.19451 0.95561 0.71949 0.98300 1.21427 1.48098 0.98454 0.91521 0.92912 1.25714 0.93793 0.95913 1.02227 1.69998 1.44817 1.07565 1.32976 0.85298 0.78453 0.78180 0.78514 1.19696 1.19976 1.19296 0.88358 0.87974 0.90574 0.90338 0.90431 0.86304 0.89116 0.87929 0.86958 0.88447 0.75913 0.92668 0.94795 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.20 9.34 71.24 0.67 -2.54 16 2 C 0.16 6.33 7.01 42.17 0.30 6.63 16 3 C -0.32 -11.47 6.13 -20.16 -0.12 -11.60 16 4 C 0.56 17.52 7.95 70.20 0.56 18.08 16 5 O -0.54 -18.43 14.63 19.77 0.29 -18.14 16 6 O -0.35 -8.72 10.07 -56.67 -0.57 -9.29 16 7 C 0.07 1.23 5.32 71.98 0.38 1.61 16 8 C -0.15 -2.12 4.25 -10.09 -0.04 -2.16 16 9 C 0.04 0.55 8.79 72.30 0.64 1.19 16 10 O -0.41 -7.50 12.46 -148.98 -1.86 -9.35 16 11 C 0.05 0.59 8.79 72.30 0.64 1.23 16 12 C 0.10 3.35 11.87 85.67 1.02 4.37 16 13 N -0.34 -14.42 12.50 -56.25 -0.70 -15.13 16 14 N -0.33 -15.07 3.56 -336.67 -1.20 -16.27 16 15 C 0.27 13.34 5.78 85.64 0.50 13.84 16 16 C -0.56 -30.01 9.39 25.60 0.24 -29.76 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.03 1.33 5.46 84.66 0.46 1.79 16 19 N -0.92 -50.22 13.29 21.45 0.28 -49.94 16 20 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.10 3.30 6.51 -2.39 -0.02 3.28 16 26 H 0.08 2.73 7.70 -2.39 -0.02 2.72 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.36 7.87 -2.39 -0.02 1.34 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 35 H 0.06 2.74 7.62 -2.38 -0.02 2.72 16 36 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -64.40 326.18 4.57 -59.82 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.08 Total: 11.74 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.22 Total: 2.67 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.62 Total: -81.33 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.14 Total: -36.78 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -64.40 4.57 -59.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263662211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds