Wall clock time and date at job start Tue Mar 31 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 11 11 C 1.55124 * 104.72581 * 155.81877 * 10 9 7 12 12 C 1.55157 * 101.48746 * 37.28923 * 11 10 9 13 13 H 1.09003 * 110.71610 * 82.70337 * 12 11 10 14 14 N 1.46501 * 110.72236 * 205.96825 * 12 11 10 15 15 C 1.34770 * 120.00364 * 199.97628 * 14 12 11 16 16 O 1.21281 * 119.99761 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00205 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.46934 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46902 * 180.02562 * 18 17 15 20 20 F 1.39895 * 109.47227 * 59.99633 * 19 18 17 21 21 F 1.39895 * 109.47049 * 179.97438 * 19 18 17 22 22 F 1.39904 * 109.46595 * 299.99673 * 19 18 17 23 23 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 1.09007 * 110.36232 * 274.74242 * 10 9 7 26 26 H 1.09000 * 110.36555 * 37.06453 * 10 9 7 27 27 H 1.09004 * 111.18844 * 279.18730 * 11 10 9 28 28 H 1.08997 * 110.94432 * 155.28923 * 11 10 9 29 29 H 0.97007 * 119.99850 * 19.98378 * 14 12 11 30 30 H 1.08996 * 109.46870 * 299.99909 * 17 15 14 31 31 H 1.09003 * 109.46786 * 60.00346 * 17 15 14 32 32 H 1.08996 * 109.47015 * 299.99510 * 18 17 15 33 33 H 1.08994 * 109.47432 * 59.99770 * 18 17 15 34 34 H 1.08998 * 109.88337 * 300.43606 * 23 9 7 35 35 H 1.08995 * 109.88041 * 61.60527 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4022 -3.9290 -0.6255 12 6 0.7782 -4.7522 -0.0455 13 1 0.5463 -5.1031 0.9601 14 7 1.1077 -5.8766 -0.9250 15 6 1.8001 -6.9280 -0.4441 16 8 2.1500 -6.9437 0.7171 17 6 2.1395 -8.0843 -1.3490 18 6 2.9219 -9.1364 -0.5604 19 6 3.2670 -10.3101 -1.4793 20 9 4.0464 -9.8527 -2.5473 21 9 3.9830 -11.2718 -0.7585 22 9 2.0877 -10.8786 -1.9725 23 6 1.9317 -3.7275 -0.0138 24 1 -0.4850 0.8401 0.0004 25 1 -0.5227 -2.4944 1.0194 26 1 -0.6022 -1.7542 -0.6087 27 1 -0.3532 -3.8892 -1.7138 28 1 -1.3593 -4.3316 -0.2942 29 1 0.8276 -5.8642 -1.8537 30 1 1.2204 -8.5274 -1.7325 31 1 2.7462 -7.7282 -2.1815 32 1 3.8409 -8.6936 -0.1766 33 1 2.3149 -9.4924 0.2719 34 1 2.5575 -3.8464 -0.8983 35 1 2.5286 -3.8689 0.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267739369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:13 Heat of formation + Delta-G solvation = -174.931197 kcal Electronic energy + Delta-G solvation = -21816.872179 eV Core-core repulsion = 17821.241027 eV Total energy + Delta-G solvation = -3995.631152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.37143 -47.86608 -47.84891 -39.83599 -37.36042 -34.13431 -33.94087 -31.90705 -29.29254 -27.92244 -26.51946 -24.48944 -22.89222 -20.77761 -20.42829 -19.79740 -18.83468 -18.72069 -17.84316 -17.07052 -16.38842 -16.03542 -15.76390 -14.82598 -14.70360 -14.67602 -14.37150 -14.27410 -14.01570 -14.00179 -13.82125 -13.46455 -13.07597 -12.63964 -12.45330 -12.03281 -11.95831 -11.71976 -11.64465 -11.14961 -10.98314 -10.83733 -10.56165 -10.11714 -9.87856 -9.82877 -9.59317 -8.85322 -8.69709 -6.87944 -5.69317 -3.11162 2.44238 2.62412 3.13642 3.38199 3.44045 3.46452 3.60326 3.78847 3.79488 4.43616 4.47489 4.64188 4.80245 5.08627 5.28201 5.32917 5.40904 5.47449 5.48516 5.74238 5.76176 6.13914 6.33020 6.42750 6.47163 6.69705 6.93211 7.42596 7.56150 7.61075 7.79382 8.24453 8.31850 9.18142 9.78664 10.42290 11.34766 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.003065 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.237709 B = 9133.744797 C = 9452.218036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.149 4.149 12 C 0.130 3.870 13 H 0.091 0.909 14 N -0.713 5.713 15 C 0.515 3.485 16 O -0.541 6.541 17 C -0.147 4.147 18 C -0.150 4.150 19 C 0.452 3.548 20 F -0.184 7.184 21 F -0.184 7.184 22 F -0.185 7.185 23 C 0.129 3.871 24 H 0.252 0.748 25 H 0.016 0.984 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.400 0.600 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.025 0.975 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -19.403 -5.288 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.189 4.189 12 C 0.026 3.974 13 H 0.109 0.891 14 N -0.364 5.364 15 C 0.300 3.700 16 O -0.418 6.418 17 C -0.187 4.187 18 C -0.189 4.189 19 C 0.398 3.602 20 F -0.165 7.165 21 F -0.165 7.165 22 F -0.166 7.166 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.234 0.766 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.043 0.957 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.133 -19.204 -4.461 19.830 hybrid contribution 0.415 0.603 -0.573 0.930 sum 2.548 -18.601 -5.034 19.437 Atomic orbital electron populations 1.69766 1.04899 1.24730 1.57831 1.24791 0.95760 0.97750 1.02404 0.85973 0.78678 0.83450 0.77261 1.20507 1.21712 1.21703 1.19142 0.90600 0.82341 1.42862 0.90393 1.44469 1.01902 0.99682 1.87002 1.22011 0.84902 0.92021 0.98378 1.23363 0.95898 0.99139 1.00452 1.22135 0.96327 0.84914 0.94064 0.89063 1.46065 1.56351 1.19339 1.14613 1.20211 0.78085 0.83332 0.88323 1.90736 1.52920 1.80210 1.17923 1.21631 1.02785 0.94890 0.99439 1.22607 1.05709 0.92533 0.98009 1.20633 0.74391 0.84782 0.80366 1.93191 1.75770 1.88685 1.58898 1.93194 1.78995 1.66659 1.77669 1.93185 1.47763 1.86749 1.88947 1.21596 0.93905 0.85898 0.98411 0.93720 0.96634 0.87047 0.91579 0.91710 0.76560 0.87635 0.87515 0.86322 0.86399 0.95691 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.08 55.49 0.56 -25.94 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.42 3.39 -169.93 -0.58 -15.99 16 10 C 0.15 3.58 5.91 -2.41 -0.01 3.56 16 11 C -0.15 -2.60 6.71 -24.47 -0.16 -2.77 16 12 C 0.13 2.25 3.23 -66.10 -0.21 2.03 16 13 H 0.09 1.68 7.70 -51.93 -0.40 1.28 16 14 N -0.71 -9.33 5.13 -52.03 -0.27 -9.60 16 15 C 0.52 6.62 7.83 -10.99 -0.09 6.53 16 16 O -0.54 -9.10 15.71 5.56 0.09 -9.01 16 17 C -0.15 -1.23 5.46 -27.88 -0.15 -1.38 16 18 C -0.15 -1.25 4.55 -26.73 -0.12 -1.37 16 19 C 0.45 3.88 3.16 37.16 0.12 4.00 16 20 F -0.18 -1.71 16.80 2.25 0.04 -1.67 16 21 F -0.18 -1.76 17.32 2.25 0.04 -1.72 16 22 F -0.18 -1.65 16.80 2.25 0.04 -1.62 16 23 C 0.13 2.76 6.99 -3.06 -0.02 2.73 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.11 2.93 5.85 -51.93 -0.30 2.63 16 27 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 4.06 8.52 -40.82 -0.35 3.71 16 30 H 0.11 0.68 7.80 -51.93 -0.41 0.27 16 31 H 0.11 0.75 7.80 -51.93 -0.41 0.35 16 32 H 0.12 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.12 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.03 0.53 8.03 -51.93 -0.42 0.11 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -31.72 306.15 -5.75 -37.47 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.35 Total: -0.05 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.91 Total: 6.60 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.28 Total: -51.53 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.72 -5.75 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267739369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.463 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds