Wall clock time and date at job start Tue Mar 31 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 11 11 C 1.55124 * 104.72581 * 155.81877 * 10 9 7 12 12 C 1.55157 * 101.48746 * 37.28923 * 11 10 9 13 13 H 1.09003 * 110.71610 * 82.70337 * 12 11 10 14 14 N 1.46501 * 110.72236 * 205.96825 * 12 11 10 15 15 C 1.34770 * 120.00364 * 199.97628 * 14 12 11 16 16 O 1.21281 * 119.99761 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00205 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.46934 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46902 * 180.02562 * 18 17 15 20 20 F 1.39895 * 109.47227 * 59.99633 * 19 18 17 21 21 F 1.39895 * 109.47049 * 179.97438 * 19 18 17 22 22 F 1.39904 * 109.46595 * 299.99673 * 19 18 17 23 23 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 1.09007 * 110.36232 * 274.74242 * 10 9 7 26 26 H 1.09000 * 110.36555 * 37.06453 * 10 9 7 27 27 H 1.09004 * 111.18844 * 279.18730 * 11 10 9 28 28 H 1.08997 * 110.94432 * 155.28923 * 11 10 9 29 29 H 0.97007 * 119.99850 * 19.98378 * 14 12 11 30 30 H 1.08996 * 109.46870 * 299.99909 * 17 15 14 31 31 H 1.09003 * 109.46786 * 60.00346 * 17 15 14 32 32 H 1.08996 * 109.47015 * 299.99510 * 18 17 15 33 33 H 1.08994 * 109.47432 * 59.99770 * 18 17 15 34 34 H 1.08998 * 109.88337 * 300.43606 * 23 9 7 35 35 H 1.08995 * 109.88041 * 61.60527 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4022 -3.9290 -0.6255 12 6 0.7782 -4.7522 -0.0455 13 1 0.5463 -5.1031 0.9601 14 7 1.1077 -5.8766 -0.9250 15 6 1.8001 -6.9280 -0.4441 16 8 2.1500 -6.9437 0.7171 17 6 2.1395 -8.0843 -1.3490 18 6 2.9219 -9.1364 -0.5604 19 6 3.2670 -10.3101 -1.4793 20 9 4.0464 -9.8527 -2.5473 21 9 3.9830 -11.2718 -0.7585 22 9 2.0877 -10.8786 -1.9725 23 6 1.9317 -3.7275 -0.0138 24 1 -0.4850 0.8401 0.0004 25 1 -0.5227 -2.4944 1.0194 26 1 -0.6022 -1.7542 -0.6087 27 1 -0.3532 -3.8892 -1.7138 28 1 -1.3593 -4.3316 -0.2942 29 1 0.8276 -5.8642 -1.8537 30 1 1.2204 -8.5274 -1.7325 31 1 2.7462 -7.7282 -2.1815 32 1 3.8409 -8.6936 -0.1766 33 1 2.3149 -9.4924 0.2719 34 1 2.5575 -3.8464 -0.8983 35 1 2.5286 -3.8689 0.8871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267739369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:12 Heat of formation + Delta-G solvation = -196.071682 kcal Electronic energy + Delta-G solvation = -21817.788899 eV Core-core repulsion = 17821.241027 eV Total energy + Delta-G solvation = -3996.547872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.06625 -48.57454 -48.53772 -40.98882 -38.94641 -35.65022 -34.73735 -33.68789 -31.05732 -29.24463 -27.78081 -26.29840 -23.72597 -22.31804 -21.79183 -21.20502 -19.51885 -19.51102 -18.97022 -18.58686 -17.47720 -17.29497 -16.71038 -16.63916 -16.02723 -15.51832 -15.43572 -15.29642 -14.98347 -14.72605 -14.70858 -14.58633 -14.34293 -14.20525 -13.72336 -13.47624 -13.29370 -13.01249 -12.75939 -12.73227 -12.48253 -12.32851 -12.19459 -11.99168 -11.84660 -11.42306 -10.95179 -10.77813 -10.11135 -8.92443 -7.79757 -5.25008 1.46911 1.47872 1.58140 1.61003 1.71479 2.17407 2.49317 2.89446 3.05661 3.12741 3.30500 3.63202 3.75078 3.77895 4.00197 4.05952 4.09287 4.25558 4.47875 4.60250 4.69868 4.75277 4.84805 4.92158 5.02057 5.06124 5.43999 5.54355 5.60942 5.77627 6.29453 6.57275 7.09004 7.25526 7.74720 8.37299 9.21757 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.003065 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.237709 B = 9133.744797 C = 9452.218036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.150 3.850 11 C -0.126 4.126 12 C 0.148 3.852 13 H 0.080 0.920 14 N -0.703 5.703 15 C 0.515 3.485 16 O -0.583 6.583 17 C -0.136 4.136 18 C -0.148 4.148 19 C 0.460 3.540 20 F -0.187 7.187 21 F -0.190 7.190 22 F -0.185 7.185 23 C 0.128 3.872 24 H 0.249 0.751 25 H -0.012 1.012 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.419 0.581 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.030 0.970 35 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -20.650 -6.687 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.025 3.975 11 C -0.165 4.165 12 C 0.042 3.958 13 H 0.098 0.902 14 N -0.355 5.355 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.175 4.175 18 C -0.186 4.186 19 C 0.406 3.594 20 F -0.168 7.168 21 F -0.172 7.172 22 F -0.166 7.166 23 C 0.001 3.999 24 H 0.059 0.941 25 H 0.006 0.994 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.256 0.744 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.048 0.952 35 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 2.178 -20.490 -5.900 21.434 hybrid contribution 0.430 0.962 -0.107 1.060 sum 2.608 -19.528 -6.007 20.596 Atomic orbital electron populations 1.70006 1.06062 1.25136 1.58325 1.25613 0.96712 1.00843 1.02387 0.84972 0.77944 0.79235 0.76916 1.19465 1.21305 1.21913 1.19458 0.90928 0.83824 1.43014 0.90626 1.44763 1.02966 1.00551 1.86880 1.21850 0.83821 0.95072 0.96792 1.23150 0.97227 0.95018 1.01130 1.21642 0.94341 0.85214 0.94569 0.90209 1.45851 1.56488 1.18129 1.15028 1.20960 0.76703 0.83839 0.88241 1.90731 1.54372 1.81069 1.20146 1.21629 1.04424 0.92860 0.98631 1.22571 1.05628 0.92408 0.98029 1.20559 0.74186 0.84572 0.80111 1.93188 1.75903 1.88683 1.59057 1.93183 1.79191 1.66955 1.77856 1.93188 1.47705 1.86785 1.88940 1.21707 0.95294 0.85475 0.97439 0.94108 0.99397 0.89930 0.89671 0.88768 0.74365 0.84807 0.85508 0.86792 0.86246 0.95160 0.97662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.40 10.08 21.65 0.22 -55.18 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 3 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.81 10.27 84.04 0.86 -12.95 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -32.43 3.39 -691.55 -2.35 -34.78 16 10 C 0.15 7.15 5.91 86.93 0.51 7.67 16 11 C -0.13 -4.17 6.71 32.06 0.22 -3.96 16 12 C 0.15 4.93 3.23 46.18 0.15 5.08 16 13 H 0.08 2.89 7.70 -2.39 -0.02 2.87 16 14 N -0.70 -16.49 5.13 -436.92 -2.24 -18.73 16 15 C 0.51 12.02 7.83 87.66 0.69 12.71 16 16 O -0.58 -19.05 15.71 -3.03 -0.05 -19.10 16 17 C -0.14 -1.80 5.46 29.85 0.16 -1.64 16 18 C -0.15 -2.13 4.55 30.60 0.14 -1.99 16 19 C 0.46 6.85 3.16 71.98 0.23 7.07 16 20 F -0.19 -3.02 16.80 44.97 0.76 -2.27 16 21 F -0.19 -3.34 17.32 44.97 0.78 -2.56 16 22 F -0.18 -2.81 16.80 44.97 0.76 -2.05 16 23 C 0.13 5.46 6.99 86.73 0.61 6.06 16 24 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 25 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 26 H 0.08 4.45 5.85 -2.39 -0.01 4.43 16 27 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.42 6.87 8.52 -92.70 -0.79 6.08 16 30 H 0.13 1.11 7.80 -2.39 -0.02 1.09 16 31 H 0.13 1.27 7.80 -2.39 -0.02 1.25 16 32 H 0.11 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -70.30 306.15 4.26 -66.04 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.33 Total: 6.15 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 4.03 Total: 14.98 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.37 Total: -108.69 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 2.29 Total: -6.88 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.30 4.26 -66.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267739369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.029 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds