Wall clock time and date at job start Tue Mar 31 2020 02:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35125 * 126.43997 * 2 1 4 4 O 1.33936 * 108.76728 * 179.77459 * 3 2 1 5 5 C 1.34911 * 109.38212 * 0.37873 * 4 3 2 6 6 C 1.46652 * 125.98619 * 179.88705 * 5 4 3 7 7 O 1.21704 * 120.00277 * 179.69284 * 6 5 4 8 8 N 1.34780 * 120.00080 * 359.69321 * 6 5 4 9 9 C 1.46504 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46941 * 180.02562 * 9 8 6 11 11 O 1.42905 * 113.28091 * 313.06421 * 10 9 8 12 12 C 1.53495 * 114.20669 * 180.02562 * 10 9 8 13 13 N 1.47066 * 87.98658 * 220.34216 * 12 10 9 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 10 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46896 * 90.00557 * 18 16 14 20 20 H 1.48506 * 109.46723 * 210.00327 * 18 16 14 21 21 H 1.48496 * 109.47378 * 330.00014 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 10 23 23 C 1.36547 * 108.02512 * 359.62486 * 5 4 3 24 24 H 1.09007 * 109.46598 * 269.99507 * 1 2 3 25 25 H 1.08994 * 109.47225 * 29.99457 * 1 2 3 26 26 H 1.08997 * 109.46772 * 149.99808 * 1 2 3 27 27 H 1.07998 * 125.61775 * 359.97438 * 3 2 1 28 28 H 0.96992 * 119.99879 * 359.97438 * 8 6 5 29 29 H 1.09003 * 109.47373 * 59.99924 * 9 8 6 30 30 H 1.08997 * 109.47135 * 299.99923 * 9 8 6 31 31 H 0.96696 * 113.99817 * 46.93921 * 11 10 9 32 32 H 1.09005 * 113.46950 * 105.56781 * 12 10 9 33 33 H 1.08994 * 113.52293 * 335.13266 * 12 10 9 34 34 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 35 35 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 36 36 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 37 37 H 1.07994 * 126.64532 * 180.19082 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0050 5 6 3.6261 -0.6680 -0.0001 6 6 4.8379 -1.4940 0.0005 7 8 4.7472 -2.7076 0.0011 8 7 6.0522 -0.9090 0.0004 9 6 7.2627 -1.7341 0.0005 10 6 8.4965 -0.8294 0.0010 11 8 8.4222 0.2277 -0.9577 12 6 9.8319 -1.5862 0.0006 13 7 10.3393 -0.5867 0.9526 14 6 11.5648 -0.0725 1.2829 15 1 12.4515 -0.4211 0.7744 16 6 11.6672 0.8975 2.2706 17 7 10.5865 1.3227 2.8899 18 14 13.3388 1.5993 2.7206 19 1 13.6217 2.7860 1.8738 20 1 13.3386 2.0003 4.1505 21 1 14.3849 0.5697 2.4954 22 6 8.9522 -0.3871 1.3985 23 6 2.3408 -1.1291 -0.0001 24 1 -0.3633 -0.0001 1.0278 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9770 2.1145 -0.0004 28 1 6.1245 0.0582 -0.0004 29 1 7.2736 -2.3635 -0.8894 30 1 7.2736 -2.3632 0.8906 31 1 7.5798 0.7024 -0.9552 32 1 10.3419 -1.5662 -0.9626 33 1 9.7634 -2.5898 0.4202 34 1 10.6581 2.0002 3.5804 35 1 8.6482 -1.0712 2.1909 36 1 8.7140 0.6523 1.6240 37 1 2.0267 -2.1624 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271343846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:05 Heat of formation + Delta-G solvation = -4.223686 kcal Electronic energy + Delta-G solvation = -21441.511999 eV Core-core repulsion = 17995.140020 eV Total energy + Delta-G solvation = -3446.371978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.89646 -39.81223 -38.63242 -35.13835 -34.52487 -33.93256 -32.05446 -30.88271 -28.79412 -27.52658 -26.12128 -24.80611 -23.40128 -21.78858 -21.32894 -20.17930 -19.38590 -18.36678 -16.95449 -16.58447 -16.56496 -16.14610 -15.54664 -15.09094 -14.76052 -14.07875 -14.00174 -13.78182 -13.53319 -13.47820 -13.26409 -13.16491 -12.88528 -12.74149 -12.25240 -11.99633 -11.88039 -11.08990 -10.91394 -10.72646 -10.54004 -10.35009 -9.94139 -9.87256 -9.53135 -9.28480 -8.97736 -8.84626 -8.74739 -6.91378 -5.78052 -3.10086 0.89977 2.07991 2.51553 3.08591 3.11716 3.39886 3.44055 3.46107 4.41464 4.43154 4.50844 4.51945 4.69712 4.93194 5.08558 5.19399 5.29730 5.30373 5.38302 5.52443 5.58030 5.67271 5.71196 5.72174 5.95889 6.15529 6.20453 6.35150 6.48236 6.51243 6.64000 6.97320 7.14343 7.34737 7.48377 7.93796 7.96935 8.12948 9.01742 9.68618 10.59149 11.39713 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.003442 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.989965 B = 8132.203867 C = 8674.450141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.197 4.197 3 C -0.008 4.008 4 O -0.160 6.160 5 C -0.072 4.072 6 C 0.603 3.397 7 O -0.522 6.522 8 N -0.712 5.712 9 C 0.106 3.894 10 C 0.056 3.944 11 O -0.521 6.521 12 C 0.135 3.865 13 N -0.600 5.600 14 C -0.214 4.214 15 H 0.083 0.917 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.136 3.864 23 C -0.120 4.120 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.209 0.791 28 H 0.403 0.597 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.361 0.639 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.253 0.747 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 -1.299 -6.293 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.198 4.198 3 C -0.078 4.078 4 O -0.055 6.055 5 C -0.124 4.124 6 C 0.389 3.611 7 O -0.400 6.400 8 N -0.364 5.364 9 C -0.018 4.018 10 C 0.013 3.987 11 O -0.325 6.325 12 C 0.008 3.992 13 N -0.325 5.325 14 C -0.341 4.341 15 H 0.101 0.899 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.009 3.991 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.226 0.774 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.207 0.793 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.364 -1.982 -6.231 19.493 hybrid contribution 0.123 1.019 0.572 1.175 sum -18.241 -0.963 -5.659 19.123 Atomic orbital electron populations 1.20176 0.88641 1.02807 1.02342 1.20491 0.97720 0.92437 1.09185 1.24216 0.79923 1.00075 1.03590 1.84082 1.29347 1.21651 1.70413 1.22092 0.96179 0.80590 1.13549 1.16520 0.81188 0.86365 0.77074 1.90884 1.85990 1.12217 1.50916 1.45856 1.05549 1.11010 1.73949 1.22059 0.82355 0.94108 1.03301 1.23449 0.93094 0.88892 0.93238 1.86644 1.39423 1.48236 1.58156 1.22379 0.89010 0.92869 0.94962 1.45263 1.02983 1.42511 1.41700 1.18911 0.82751 1.16328 1.16123 0.89944 1.24794 0.97566 0.99439 0.98695 1.69816 1.26550 1.32814 1.27639 0.86066 0.82871 0.79054 0.77444 1.21478 1.21643 1.20626 1.22760 0.84690 1.01228 0.90391 1.21831 0.90529 1.00561 1.01163 0.91256 0.91464 0.91313 0.77435 0.76087 0.90560 0.89738 0.79319 0.92980 0.93193 0.93679 0.94817 0.90489 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.01 0.37 -0.13 16 2 C -0.20 -1.78 6.14 -104.93 -0.64 -2.43 16 3 C -0.01 -0.07 12.00 29.62 0.36 0.29 16 4 O -0.16 -1.80 10.40 4.99 0.05 -1.75 16 5 C -0.07 -0.91 7.13 -36.80 -0.26 -1.18 16 6 C 0.60 8.81 7.79 -12.86 -0.10 8.71 16 7 O -0.52 -9.02 16.87 5.19 0.09 -8.93 16 8 N -0.71 -9.78 5.34 -61.62 -0.33 -10.11 16 9 C 0.11 1.62 5.43 -4.04 -0.02 1.60 16 10 C 0.06 1.04 1.73 -90.11 -0.16 0.88 16 11 O -0.52 -9.70 13.56 -35.23 -0.48 -10.18 16 12 C 0.13 2.80 8.11 -8.51 -0.07 2.73 16 13 N -0.60 -15.65 3.78 -184.75 -0.70 -16.35 16 14 C -0.21 -6.12 10.75 -15.06 -0.16 -6.28 16 15 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -27.47 11.51 55.49 0.64 -26.83 16 18 Si 0.92 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.14 3.14 6.83 -8.51 -0.06 3.08 16 23 C -0.12 -1.36 10.57 -39.39 -0.42 -1.77 16 24 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.40 4.94 6.70 -40.82 -0.27 4.66 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 31 H 0.36 5.10 7.20 45.56 0.33 5.42 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 36 H 0.08 1.98 7.12 -51.93 -0.37 1.61 16 37 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -34.90 322.59 -6.21 -41.10 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.06 Total: 5.67 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.26 Total: 5.16 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.39 Total: -53.29 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.34 Total: -20.86 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.90 -6.21 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271343846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.881 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds